Wall clock time and date at job start Tue Mar 31 2020 14:26:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 C 1.38237 * 119.99863 * 2 1 4 4 C 1.38241 * 119.99960 * 179.97438 * 3 2 1 5 5 C 1.50703 * 119.99960 * 179.97438 * 4 3 2 6 6 C 1.38235 * 119.99760 * 359.97438 * 4 3 2 7 7 C 1.38233 * 120.00108 * 359.97215 * 6 4 3 8 8 S 1.76202 * 119.99731 * 180.02562 * 7 6 4 9 9 O 1.42097 * 106.40711 * 336.46010 * 8 7 6 10 10 O 1.42106 * 106.40116 * 203.54096 * 8 7 6 11 11 N 1.65596 * 107.21724 * 90.00550 * 8 7 6 12 12 C 1.46931 * 120.62944 * 270.01745 * 11 8 7 13 13 C 1.53191 * 108.76527 * 126.35988 * 12 11 8 14 14 C 1.53046 * 109.30997 * 54.65907 * 13 12 11 15 15 C 1.53039 * 109.52798 * 298.61471 * 14 13 12 16 16 H 1.09000 * 109.49863 * 301.42271 * 15 14 13 17 17 C 1.50698 * 109.50055 * 181.35641 * 15 14 13 18 18 H 1.07997 * 119.99643 * 239.99946 * 17 15 14 19 19 C 1.37875 * 119.99934 * 59.99821 * 17 15 14 20 20 N 1.31517 * 120.00258 * 359.97438 * 19 17 15 21 21 Si 1.86799 * 120.00135 * 180.02562 * 19 17 15 22 22 H 1.48505 * 109.47014 * 59.99679 * 21 19 17 23 23 H 1.48495 * 109.47254 * 179.97438 * 21 19 17 24 24 H 1.48498 * 109.47093 * 300.00079 * 21 19 17 25 25 C 1.46919 * 120.63444 * 89.99912 * 11 8 7 26 26 C 1.38232 * 120.00083 * 180.15957 * 2 1 3 27 27 H 1.09003 * 109.47123 * 90.00536 * 1 2 3 28 28 H 1.09002 * 109.47085 * 210.00323 * 1 2 3 29 29 H 1.08994 * 109.47479 * 330.00308 * 1 2 3 30 30 H 1.07992 * 120.00232 * 359.97438 * 3 2 1 31 31 H 1.08999 * 109.46722 * 269.97980 * 5 4 3 32 32 H 1.08996 * 109.46896 * 29.98378 * 5 4 3 33 33 H 1.09004 * 109.46610 * 149.98207 * 5 4 3 34 34 H 1.08004 * 119.99754 * 179.97438 * 6 4 3 35 35 H 1.08998 * 109.58959 * 246.15725 * 12 11 8 36 36 H 1.09003 * 109.58592 * 6.58293 * 12 11 8 37 37 H 1.08998 * 109.50939 * 294.70294 * 13 12 11 38 38 H 1.09003 * 109.48831 * 174.59930 * 13 12 11 39 39 H 1.09002 * 109.46115 * 178.59924 * 14 13 12 40 40 H 1.09004 * 109.45806 * 58.62809 * 14 13 12 41 41 H 0.96995 * 120.00244 * 179.97438 * 20 19 17 42 42 H 1.08997 * 109.59005 * 113.84271 * 25 11 8 43 43 H 1.09000 * 109.58835 * 353.41607 * 25 11 8 44 44 H 1.07995 * 120.00513 * 0.06574 * 26 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1981 1.1972 0.0000 4 6 3.5805 1.1972 0.0005 5 6 4.3340 2.5024 0.0000 6 6 4.2717 0.0000 0.0016 7 6 3.5805 -1.1971 0.0027 8 16 4.4616 -2.7230 0.0048 9 8 5.7447 -2.4463 -0.5395 10 8 3.5801 -3.6961 -0.5389 11 7 4.7060 -3.1458 1.5871 12 6 5.9112 -2.7044 2.3023 13 6 5.4869 -1.9980 3.5937 14 6 4.5802 -2.9270 4.4043 15 6 3.3222 -3.2487 3.5943 16 1 2.8012 -2.3233 3.3485 17 6 2.4145 -4.1365 4.4061 18 1 2.1465 -5.1157 4.0378 19 6 1.9264 -3.6986 5.6189 20 7 2.2532 -2.5063 6.0676 21 14 0.8019 -4.7993 6.6255 22 1 1.5121 -6.0602 6.9587 23 1 0.4186 -4.1015 7.8790 24 1 -0.4185 -5.1117 5.8393 25 6 3.7217 -3.9690 2.3027 26 6 2.1981 -1.1971 -0.0033 27 1 -0.3633 -0.0001 -1.0277 28 1 -0.3633 -0.8900 0.5139 29 1 -0.3634 0.8899 0.5137 30 1 1.6582 2.1324 -0.0004 31 1 4.5163 2.8161 -1.0279 32 1 3.7446 3.2623 0.5128 33 1 5.2861 2.3724 0.5146 34 1 5.3517 0.0001 0.0016 35 1 6.5295 -3.5687 2.5445 36 1 6.4751 -2.0130 1.6760 37 1 4.9453 -1.0845 3.3479 38 1 6.3716 -1.7504 4.1803 39 1 4.2969 -2.4363 5.3355 40 1 5.1139 -3.8506 4.6283 41 1 1.9095 -2.1981 6.9207 42 1 4.1615 -4.9364 2.5449 43 1 2.8409 -4.1121 1.6767 44 1 1.6583 -2.1324 -0.0070 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001259520703.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:26:42 Heat of formation + Delta-G solvation = -84.814955 kcal Electronic energy + Delta-G solvation = -26452.570486 eV Core-core repulsion = 22881.125160 eV Total energy + Delta-G solvation = -3571.445326 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 323.134 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -40.50638 -39.31915 -38.45075 -37.02374 -35.19936 -34.54071 -33.28401 -32.72388 -31.87586 -28.32323 -27.76119 -27.02284 -25.23221 -24.09062 -23.33739 -21.81775 -21.10690 -19.74355 -18.86951 -18.26434 -18.05093 -17.30304 -17.05327 -16.63319 -16.30092 -15.38887 -15.24568 -15.01963 -14.91025 -14.76278 -14.45571 -14.32689 -14.11884 -14.02354 -13.83251 -13.43563 -13.33859 -13.24543 -13.22490 -12.92693 -12.88412 -12.82515 -12.77288 -12.68826 -12.54614 -12.14574 -11.91069 -11.83003 -11.78415 -11.51176 -11.06738 -10.76068 -10.39818 -10.18682 -9.77221 -9.64944 -8.05587 -6.19699 -0.68884 -0.18086 0.25263 1.44873 1.45115 1.52407 1.87093 2.42538 2.46527 2.72326 3.18230 3.21505 3.73579 3.76557 3.80509 3.99670 4.22807 4.24236 4.27698 4.32188 4.36991 4.56338 4.57504 4.60217 4.75163 4.76686 4.80260 4.82882 4.87846 4.93174 4.94745 5.02683 5.09394 5.12006 5.26729 5.28935 5.35947 5.37744 5.44878 5.54404 5.66410 5.72826 5.89472 6.00527 6.18149 6.41015 6.91017 7.48089 8.97670 Molecular weight = 323.13amu Principal moments of inertia in cm(-1) A = 0.011951 B = 0.005062 C = 0.004446 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2342.403851 B = 5530.193045 C = 6295.868353 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.115 4.115 2 C -0.110 4.110 3 C -0.071 4.071 4 C -0.107 4.107 5 C -0.112 4.112 6 C -0.045 4.045 7 C -0.673 4.673 8 S 2.701 3.299 9 O -0.975 6.975 10 O -0.987 6.987 11 N -0.992 5.992 12 C 0.121 3.879 13 C -0.125 4.125 14 C -0.105 4.105 15 C 0.040 3.960 16 H -0.001 1.001 17 C -0.535 4.535 18 H 0.056 0.944 19 C 0.020 3.980 20 N -0.912 5.912 21 Si 0.949 3.051 22 H -0.272 1.272 23 H -0.286 1.286 24 H -0.274 1.274 25 C 0.135 3.865 26 C -0.050 4.050 27 H 0.089 0.911 28 H 0.062 0.938 29 H 0.085 0.915 30 H 0.160 0.840 31 H 0.087 0.913 32 H 0.083 0.917 33 H 0.075 0.925 34 H 0.147 0.853 35 H 0.084 0.916 36 H 0.100 0.900 37 H 0.047 0.953 38 H 0.083 0.917 39 H 0.062 0.938 40 H 0.034 0.966 41 H 0.260 0.740 42 H 0.068 0.932 43 H 0.070 0.930 44 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.115 9.819 -10.778 14.909 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C -0.111 4.111 3 C -0.089 4.089 4 C -0.108 4.108 5 C -0.169 4.169 6 C -0.064 4.064 7 C -0.762 4.762 8 S 2.794 3.206 9 O -0.966 6.966 10 O -0.978 6.978 11 N -0.831 5.831 12 C -0.003 4.003 13 C -0.164 4.164 14 C -0.143 4.143 15 C 0.021 3.979 16 H 0.017 0.983 17 C -0.574 4.574 18 H 0.074 0.926 19 C -0.179 4.179 20 N -0.551 5.551 21 Si 0.775 3.225 22 H -0.197 1.197 23 H -0.212 1.212 24 H -0.199 1.199 25 C 0.011 3.989 26 C -0.069 4.069 27 H 0.108 0.892 28 H 0.081 0.919 29 H 0.104 0.896 30 H 0.178 0.822 31 H 0.106 0.894 32 H 0.102 0.898 33 H 0.094 0.906 34 H 0.165 0.835 35 H 0.102 0.898 36 H 0.118 0.882 37 H 0.066 0.934 38 H 0.101 0.899 39 H 0.081 0.919 40 H 0.053 0.947 41 H 0.069 0.931 42 H 0.087 0.913 43 H 0.089 0.911 44 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges 3.380 9.439 -11.366 15.156 hybrid contribution -1.182 -0.235 1.170 1.680 sum 2.198 9.203 -10.196 13.910 Atomic orbital electron populations 1.20880 0.88788 1.03857 1.03642 1.20386 0.98036 0.92805 0.99826 1.21615 0.93871 0.98512 0.94908 1.20438 0.94472 0.96306 0.99541 1.20885 1.00170 0.92036 1.03773 1.21003 1.00543 0.90841 0.94027 1.30833 1.06588 1.20235 1.18539 1.01414 0.72972 0.73755 0.72425 1.93505 1.39902 1.86209 1.76977 1.93512 1.67673 1.59321 1.77267 1.57573 1.30494 1.64695 1.30303 1.21630 0.84892 1.00039 0.93788 1.21898 0.99879 0.98342 0.96315 1.21404 0.95307 0.97539 1.00074 1.18886 0.93468 0.94432 0.91159 0.98280 1.21452 1.29125 1.02322 1.04517 0.92623 1.25612 0.97555 0.96181 0.98552 1.70002 1.45439 1.19070 1.20628 0.85760 0.79559 0.79204 0.77998 1.19682 1.21171 1.19894 1.21548 0.89725 0.93472 0.94175 1.20927 0.92215 0.99598 0.94203 0.89239 0.91871 0.89573 0.82241 0.89416 0.89773 0.90605 0.83527 0.89806 0.88207 0.93378 0.89892 0.91938 0.94697 0.93120 0.91326 0.91121 0.85381 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.44 10.01 71.23 0.71 -1.73 16 2 C -0.11 -2.98 5.88 -19.87 -0.12 -3.09 16 3 C -0.07 -1.64 9.36 22.27 0.21 -1.44 16 4 C -0.11 -2.53 5.88 -19.86 -0.12 -2.64 16 5 C -0.11 -1.76 10.01 71.24 0.71 -1.05 16 6 C -0.04 -1.27 9.18 22.27 0.20 -1.06 16 7 C -0.67 -22.08 5.97 22.27 0.13 -21.95 16 8 S 2.70 95.07 5.69 -56.49 -0.32 94.75 16 9 O -0.98 -34.83 16.00 -128.00 -2.05 -36.88 16 10 O -0.99 -39.57 15.99 -128.00 -2.05 -41.61 16 11 N -0.99 -35.62 3.29 -513.07 -1.69 -37.30 16 12 C 0.12 3.78 6.38 86.36 0.55 4.33 16 13 C -0.13 -4.37 6.08 30.67 0.19 -4.18 16 14 C -0.10 -4.68 4.96 30.62 0.15 -4.53 16 15 C 0.04 1.95 2.25 -11.46 -0.03 1.92 16 16 H 0.00 -0.05 8.14 -2.39 -0.02 -0.07 16 17 C -0.54 -28.47 8.57 25.60 0.22 -28.25 16 18 H 0.06 2.90 7.74 -2.91 -0.02 2.87 16 19 C 0.02 1.08 5.30 84.65 0.45 1.53 16 20 N -0.91 -50.90 11.31 21.45 0.24 -50.65 16 21 Si 0.95 42.54 29.54 68.60 2.03 44.57 16 22 H -0.27 -11.88 7.11 99.48 0.71 -11.17 16 23 H -0.29 -12.65 7.11 99.48 0.71 -11.94 16 24 H -0.27 -12.03 7.11 99.48 0.71 -11.33 16 25 C 0.14 5.60 5.60 86.36 0.48 6.08 16 26 C -0.05 -1.63 9.18 22.27 0.20 -1.43 16 27 H 0.09 1.54 8.14 -2.39 -0.02 1.53 16 28 H 0.06 1.47 8.09 -2.39 -0.02 1.45 16 29 H 0.09 1.50 8.08 -2.39 -0.02 1.48 16 30 H 0.16 2.53 8.06 -2.91 -0.02 2.50 16 31 H 0.09 1.11 8.14 -2.39 -0.02 1.09 16 32 H 0.08 1.07 8.08 -2.39 -0.02 1.05 16 33 H 0.08 1.12 8.09 -2.38 -0.02 1.10 16 34 H 0.15 3.65 7.62 -2.91 -0.02 3.63 16 35 H 0.08 2.38 8.14 -2.39 -0.02 2.36 16 36 H 0.10 2.65 7.13 -2.39 -0.02 2.64 16 37 H 0.05 1.75 8.14 -2.39 -0.02 1.73 16 38 H 0.08 2.44 8.14 -2.39 -0.02 2.42 16 39 H 0.06 3.20 6.04 -2.39 -0.01 3.18 16 40 H 0.03 1.52 8.14 -2.39 -0.02 1.50 16 41 H 0.26 13.90 8.31 -92.71 -0.77 13.13 16 42 H 0.07 2.75 8.14 -2.39 -0.02 2.73 16 43 H 0.07 2.95 7.12 -2.39 -0.02 2.93 16 44 H 0.13 4.27 7.61 -2.91 -0.02 4.25 16 Total: -1.00 -66.65 364.85 1.10 -65.55 By element: Atomic # 1 Polarization: 18.09 SS G_CDS: 0.98 Total: 19.07 kcal Atomic # 6 Polarization: -61.44 SS G_CDS: 3.96 Total: -57.48 kcal Atomic # 7 Polarization: -86.51 SS G_CDS: -1.45 Total: -87.96 kcal Atomic # 8 Polarization: -74.40 SS G_CDS: -4.09 Total: -78.50 kcal Atomic # 14 Polarization: 42.54 SS G_CDS: 2.03 Total: 44.57 kcal Atomic # 16 Polarization: 95.07 SS G_CDS: -0.32 Total: 94.75 kcal Total: -66.65 1.10 -65.55 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001259520703.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -19.267 kcal (2) G-P(sol) polarization free energy of solvation -66.651 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -85.918 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.103 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.548 kcal (6) G-S(sol) free energy of system = (1) + (5) -84.815 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds