Wall clock time and date at job start Tue Mar 31 2020 14:16:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.38241 * 119.99851 * 2 1 4 4 C 1.38233 * 120.00016 * 179.97438 * 3 2 1 5 5 C 1.50703 * 119.99936 * 180.02562 * 4 3 2 6 6 C 1.38235 * 120.00105 * 0.02562 * 4 3 2 7 7 C 1.38230 * 119.99969 * 359.96172 * 6 4 3 8 8 S 1.76197 * 120.00226 * 179.72198 * 7 6 4 9 9 O 1.42092 * 106.40482 * 203.54059 * 8 7 6 10 10 O 1.42103 * 106.40006 * 336.45965 * 8 7 6 11 11 N 1.65599 * 107.21924 * 89.99404 * 8 7 6 12 12 C 1.46496 * 119.99896 * 65.00649 * 11 8 7 13 13 H 1.09009 * 109.41601 * 334.99789 * 12 11 8 14 14 C 1.52961 * 109.41709 * 94.85534 * 12 11 8 15 15 C 1.53241 * 109.39985 * 183.77852 * 14 12 11 16 16 C 1.51272 * 108.48107 * 305.26406 * 15 14 12 17 17 C 1.37882 * 120.84885 * 231.36674 * 16 15 14 18 18 N 1.31507 * 120.00298 * 348.88619 * 17 16 15 19 19 Si 1.86804 * 119.99878 * 168.88053 * 17 16 15 20 20 H 1.48499 * 109.46983 * 354.66105 * 19 17 16 21 21 H 1.48498 * 109.46988 * 114.66052 * 19 17 16 22 22 H 1.48504 * 109.47283 * 234.66471 * 19 17 16 23 23 C 1.51267 * 118.30163 * 51.39440 * 16 15 14 24 24 C 1.52960 * 109.41764 * 215.14133 * 12 11 8 25 25 C 1.38232 * 120.00305 * 179.97438 * 2 1 3 26 26 H 1.08995 * 109.47083 * 89.99856 * 1 2 3 27 27 H 1.09003 * 109.46474 * 209.99777 * 1 2 3 28 28 H 1.09000 * 109.47515 * 329.99514 * 1 2 3 29 29 H 1.08005 * 119.99511 * 0.02562 * 3 2 1 30 30 H 1.09005 * 109.46534 * 270.02087 * 5 4 3 31 31 H 1.09000 * 109.47146 * 30.01148 * 5 4 3 32 32 H 1.08994 * 109.47174 * 150.02211 * 5 4 3 33 33 H 1.07997 * 119.99935 * 179.97438 * 6 4 3 34 34 H 0.97001 * 120.00348 * 245.00148 * 11 8 7 35 35 H 1.09006 * 109.48087 * 303.68407 * 14 12 11 36 36 H 1.08997 * 109.47905 * 63.72764 * 14 12 11 37 37 H 1.08999 * 109.61694 * 185.59339 * 15 14 12 38 38 H 1.08992 * 109.84827 * 65.07523 * 15 14 12 39 39 H 0.96998 * 120.00636 * 179.97438 * 18 17 16 40 40 H 1.09003 * 109.62668 * 188.94088 * 23 16 15 41 41 H 1.08997 * 109.62919 * 68.36290 * 23 16 15 42 42 H 1.09008 * 109.47949 * 296.27334 * 24 12 11 43 43 H 1.08995 * 109.47985 * 56.29496 * 24 12 11 44 44 H 1.07993 * 120.00011 * 0.04385 * 25 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1982 1.1972 0.0000 4 6 3.5805 1.1973 0.0005 5 6 4.3340 2.5024 0.0011 6 6 4.2717 0.0001 0.0005 7 6 3.5806 -1.1970 0.0008 8 16 4.4616 -2.7229 -0.0066 9 8 3.5776 -3.6940 -0.5494 10 8 5.7421 -2.4442 -0.5561 11 7 4.7138 -3.1510 1.5731 12 6 3.5742 -3.4723 2.4358 13 1 2.6815 -2.9742 2.0573 14 6 3.3495 -4.9853 2.4390 15 6 2.1010 -5.3127 3.2651 16 6 2.2634 -4.7050 4.6409 17 6 2.0785 -5.4656 5.7760 18 7 1.5483 -6.6655 5.6844 19 14 2.5814 -4.7915 7.4440 20 1 3.2660 -3.4860 7.2644 21 1 1.3734 -4.6051 8.2872 22 1 3.5048 -5.7475 8.1064 23 6 2.6332 -3.2416 4.7394 24 6 3.8613 -2.9891 3.8584 25 6 2.1982 -1.1971 0.0005 26 1 -0.3633 0.0000 -1.0276 27 1 -0.3632 -0.8901 0.5138 28 1 -0.3634 0.8899 0.5139 29 1 1.6580 2.1325 0.0004 30 1 4.5156 2.8174 -1.0265 31 1 3.7447 3.2619 0.5151 32 1 5.2863 2.3719 0.5149 33 1 5.3517 0.0002 0.0005 34 1 5.6161 -3.1892 1.9272 35 1 3.2089 -5.3341 1.4159 36 1 4.2163 -5.4806 2.8764 37 1 1.9934 -6.3938 3.3528 38 1 1.2177 -4.8948 2.7823 39 1 1.4185 -7.2007 6.4829 40 1 2.8676 -2.9921 5.7743 41 1 1.8012 -2.6294 4.3917 42 1 4.7158 -3.5328 4.2615 43 1 4.0841 -1.9223 3.8420 44 1 1.6583 -2.1324 0.0002 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001259526235.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:16:25 Heat of formation + Delta-G solvation = -95.585394 kcal Electronic energy + Delta-G solvation = -25977.772922 eV Core-core repulsion = 22405.860555 eV Total energy + Delta-G solvation = -3571.912367 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 323.134 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -40.52792 -39.19045 -38.28977 -37.00008 -35.41684 -34.53471 -33.30256 -33.06048 -31.40396 -28.63955 -28.30898 -27.75517 -24.15950 -23.88712 -23.26321 -21.85245 -21.29768 -20.33911 -18.75560 -18.33296 -17.82950 -17.36090 -17.04990 -16.64590 -16.36037 -15.76949 -15.06258 -14.95228 -14.81231 -14.71057 -14.20918 -14.11572 -14.05345 -14.01058 -13.99750 -13.41478 -13.28564 -13.23146 -13.16027 -13.04053 -12.92716 -12.90045 -12.80074 -12.68261 -12.43625 -12.13786 -11.88594 -11.78072 -11.73675 -11.22009 -10.96638 -10.71162 -10.45881 -10.20608 -10.08409 -9.65547 -8.13494 -6.06396 -0.66614 -0.20382 0.24409 1.42071 1.46495 1.54672 1.95345 2.41927 2.45250 2.73887 3.13978 3.27074 3.75972 3.77113 3.90443 4.01408 4.23319 4.23890 4.29846 4.32869 4.45386 4.47638 4.58953 4.77785 4.78655 4.79546 4.83846 4.94312 4.99079 5.03418 5.05872 5.10853 5.14511 5.28696 5.29236 5.33935 5.37198 5.45878 5.49537 5.64129 5.67263 5.81757 5.85900 5.88590 6.15189 6.39101 6.99552 7.50903 8.97891 Molecular weight = 323.13amu Principal moments of inertia in cm(-1) A = 0.014572 B = 0.004153 C = 0.003837 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1921.006596 B = 6739.903898 C = 7295.855633 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.118 4.118 2 C -0.106 4.106 3 C -0.067 4.067 4 C -0.105 4.105 5 C -0.114 4.114 6 C -0.043 4.043 7 C -0.670 4.670 8 S 2.703 3.297 9 O -0.988 6.988 10 O -0.985 6.985 11 N -1.103 6.103 12 C 0.174 3.826 13 H 0.075 0.925 14 C -0.120 4.120 15 C 0.009 3.991 16 C -0.498 4.498 17 C 0.019 3.981 18 N -0.932 5.932 19 Si 0.935 3.065 20 H -0.229 1.229 21 H -0.286 1.286 22 H -0.292 1.292 23 C -0.026 4.026 24 C -0.107 4.107 25 C -0.051 4.051 26 H 0.084 0.916 27 H 0.065 0.935 28 H 0.089 0.911 29 H 0.161 0.839 30 H 0.084 0.916 31 H 0.086 0.914 32 H 0.075 0.925 33 H 0.147 0.853 34 H 0.425 0.575 35 H 0.044 0.956 36 H 0.050 0.950 37 H 0.020 0.980 38 H -0.001 1.001 39 H 0.261 0.739 40 H 0.049 0.951 41 H 0.024 0.976 42 H 0.060 0.940 43 H 0.071 0.929 44 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.845 20.110 -9.729 22.668 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C -0.107 4.107 3 C -0.085 4.085 4 C -0.106 4.106 5 C -0.170 4.170 6 C -0.062 4.062 7 C -0.759 4.759 8 S 2.796 3.204 9 O -0.978 6.978 10 O -0.975 6.975 11 N -0.864 5.864 12 C 0.068 3.932 13 H 0.093 0.907 14 C -0.159 4.159 15 C -0.030 4.030 16 C -0.517 4.517 17 C -0.179 4.179 18 N -0.572 5.572 19 Si 0.761 3.239 20 H -0.152 1.152 21 H -0.213 1.213 22 H -0.219 1.219 23 C -0.064 4.064 24 C -0.146 4.146 25 C -0.071 4.071 26 H 0.103 0.897 27 H 0.084 0.916 28 H 0.108 0.892 29 H 0.179 0.821 30 H 0.102 0.898 31 H 0.105 0.895 32 H 0.094 0.906 33 H 0.164 0.836 34 H 0.262 0.738 35 H 0.063 0.937 36 H 0.069 0.931 37 H 0.039 0.961 38 H 0.017 0.983 39 H 0.070 0.930 40 H 0.067 0.933 41 H 0.042 0.958 42 H 0.079 0.921 43 H 0.089 0.911 44 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges 3.902 19.488 -10.456 22.457 hybrid contribution -0.021 -0.343 1.278 1.323 sum 3.881 19.145 -9.178 21.583 Atomic orbital electron populations 1.20905 0.88809 1.04112 1.03593 1.20362 0.97928 0.92679 0.99695 1.21634 0.93743 0.98593 0.94516 1.20417 0.94481 0.96168 0.99548 1.20895 1.00257 0.92192 1.03693 1.21008 1.00602 0.90786 0.93801 1.30636 1.06418 1.19651 1.19211 1.01264 0.72746 0.73956 0.72455 1.93555 1.67772 1.59085 1.77432 1.93526 1.40744 1.86221 1.77032 1.55410 1.16098 1.84552 1.30317 1.20565 0.86213 0.95096 0.91375 0.90688 1.22023 0.99704 0.95761 0.98459 1.19306 0.92519 0.97076 0.94056 1.20643 1.44545 0.95077 0.91450 1.25683 0.94845 0.95075 1.02261 1.70052 1.44392 1.12653 1.30111 0.85860 0.78449 0.79825 0.79763 1.15245 1.21251 1.21857 1.19964 0.94439 0.94697 0.97342 1.21799 0.99664 0.99858 0.93292 1.20984 0.92090 0.99722 0.94271 0.89716 0.91588 0.89249 0.82137 0.89764 0.89544 0.90574 0.83564 0.73812 0.93696 0.93077 0.96116 0.98270 0.92974 0.93278 0.95773 0.92077 0.91088 0.85207 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.94 10.01 71.24 0.71 -1.22 16 2 C -0.11 -2.27 5.88 -19.87 -0.12 -2.39 16 3 C -0.07 -1.18 9.36 22.27 0.21 -0.97 16 4 C -0.11 -1.95 5.88 -19.87 -0.12 -2.06 16 5 C -0.11 -1.30 10.01 71.24 0.71 -0.58 16 6 C -0.04 -0.98 9.18 22.27 0.20 -0.78 16 7 C -0.67 -18.29 5.81 22.27 0.13 -18.16 16 8 S 2.70 83.61 5.65 -56.49 -0.32 83.29 16 9 O -0.99 -37.31 16.48 -128.00 -2.11 -39.42 16 10 O -0.98 -32.47 17.28 -128.00 -2.21 -34.68 16 11 N -1.10 -32.52 5.47 -169.50 -0.93 -33.44 16 12 C 0.17 6.16 2.55 44.97 0.11 6.28 16 13 H 0.08 2.64 7.24 -2.38 -0.02 2.62 16 14 C -0.12 -5.13 5.54 30.66 0.17 -4.96 16 15 C 0.01 0.44 5.93 30.11 0.18 0.62 16 16 C -0.50 -25.42 5.48 -16.17 -0.09 -25.51 16 17 C 0.02 1.05 5.44 84.66 0.46 1.51 16 18 N -0.93 -54.77 12.82 21.45 0.28 -54.49 16 19 Si 0.93 41.18 27.95 68.60 1.92 43.10 16 20 H -0.23 -8.97 5.58 99.48 0.56 -8.41 16 21 H -0.29 -12.64 7.11 99.48 0.71 -11.93 16 22 H -0.29 -13.03 7.11 99.48 0.71 -12.32 16 23 C -0.03 -1.10 5.65 30.11 0.17 -0.93 16 24 C -0.11 -3.72 5.46 30.66 0.17 -3.56 16 25 C -0.05 -1.38 8.57 22.27 0.19 -1.19 16 26 H 0.08 1.18 8.14 -2.39 -0.02 1.17 16 27 H 0.07 1.21 8.09 -2.39 -0.02 1.19 16 28 H 0.09 1.09 8.09 -2.39 -0.02 1.07 16 29 H 0.16 1.71 8.06 -2.91 -0.02 1.68 16 30 H 0.08 0.79 8.14 -2.38 -0.02 0.77 16 31 H 0.09 0.70 8.09 -2.39 -0.02 0.68 16 32 H 0.08 0.80 8.08 -2.39 -0.02 0.78 16 33 H 0.15 2.98 7.62 -2.91 -0.02 2.96 16 34 H 0.43 10.42 8.84 -96.74 -0.85 9.56 16 35 H 0.04 1.91 7.58 -2.38 -0.02 1.90 16 36 H 0.05 2.19 8.14 -2.39 -0.02 2.17 16 37 H 0.02 1.16 7.19 -2.39 -0.02 1.15 16 38 H 0.00 -0.06 8.14 -2.39 -0.02 -0.08 16 39 H 0.26 14.59 8.31 -92.71 -0.77 13.82 16 40 H 0.05 2.00 4.36 -2.39 -0.01 1.99 16 41 H 0.02 0.98 8.14 -2.39 -0.02 0.96 16 42 H 0.06 2.12 8.14 -2.38 -0.02 2.10 16 43 H 0.07 2.05 8.14 -2.39 -0.02 2.03 16 44 H 0.13 3.68 7.61 -2.91 -0.02 3.66 16 Total: -1.00 -69.77 362.35 -0.28 -70.04 By element: Atomic # 1 Polarization: 19.51 SS G_CDS: 0.00 Total: 19.51 kcal Atomic # 6 Polarization: -57.00 SS G_CDS: 3.10 Total: -53.91 kcal Atomic # 7 Polarization: -87.29 SS G_CDS: -0.65 Total: -87.94 kcal Atomic # 8 Polarization: -69.78 SS G_CDS: -4.32 Total: -74.10 kcal Atomic # 14 Polarization: 41.18 SS G_CDS: 1.92 Total: 43.10 kcal Atomic # 16 Polarization: 83.61 SS G_CDS: -0.32 Total: 83.29 kcal Total: -69.77 -0.28 -70.04 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001259526235.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -25.540 kcal (2) G-P(sol) polarization free energy of solvation -69.769 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -95.309 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.276 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.045 kcal (6) G-S(sol) free energy of system = (1) + (5) -95.585 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds