Wall clock time and date at job start Tue Mar 31 2020 14:16:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.38234 * 120.00257 * 2 1 4 4 C 1.38233 * 120.00037 * 180.25732 * 3 2 1 5 5 C 1.50693 * 120.00207 * 179.72405 * 4 3 2 6 6 C 1.38238 * 119.99747 * 359.50225 * 4 3 2 7 7 C 1.38234 * 120.00056 * 0.47382 * 6 4 3 8 8 S 1.76199 * 120.00031 * 179.78886 * 7 6 4 9 9 O 1.42098 * 106.40483 * 23.51480 * 8 7 6 10 10 O 1.42107 * 106.40274 * 156.43886 * 8 7 6 11 11 N 1.65601 * 107.21620 * 269.97364 * 8 7 6 12 12 C 1.46501 * 119.99590 * 65.00305 * 11 8 7 13 13 H 1.08997 * 109.42011 * 25.13924 * 12 11 8 14 14 C 1.52966 * 109.41304 * 144.99986 * 12 11 8 15 15 C 1.53228 * 109.40632 * 183.70232 * 14 12 11 16 16 C 1.51272 * 108.53586 * 305.37224 * 15 14 12 17 17 C 1.37877 * 120.84717 * 231.36664 * 16 15 14 18 18 N 1.31505 * 120.00349 * 0.02562 * 17 16 15 19 19 Si 1.86801 * 119.99524 * 179.97438 * 17 16 15 20 20 H 1.48503 * 109.46918 * 90.00632 * 19 17 16 21 21 H 1.48497 * 109.46848 * 210.00032 * 19 17 16 22 22 H 1.48502 * 109.47666 * 330.00162 * 19 17 16 23 23 C 1.51277 * 118.29894 * 51.34577 * 16 15 14 24 24 C 1.52962 * 109.41361 * 265.34730 * 12 11 8 25 25 C 1.38235 * 119.99522 * 179.97438 * 2 1 3 26 26 H 1.09002 * 109.46776 * 89.99941 * 1 2 3 27 27 H 1.08999 * 109.47786 * 210.00481 * 1 2 3 28 28 H 1.08998 * 109.46961 * 330.00864 * 1 2 3 29 29 H 1.08002 * 119.99744 * 359.97115 * 3 2 1 30 30 H 1.09000 * 109.47363 * 89.99511 * 5 4 3 31 31 H 1.09000 * 109.47097 * 209.99342 * 5 4 3 32 32 H 1.09001 * 109.47081 * 329.99847 * 5 4 3 33 33 H 1.07999 * 119.99919 * 180.25938 * 6 4 3 34 34 H 0.97000 * 120.00187 * 244.99383 * 11 8 7 35 35 H 1.09006 * 109.48011 * 303.68493 * 14 12 11 36 36 H 1.08996 * 109.48084 * 63.70580 * 14 12 11 37 37 H 1.08997 * 109.62501 * 65.08282 * 15 14 12 38 38 H 1.08999 * 109.62677 * 185.46681 * 15 14 12 39 39 H 0.96997 * 120.00320 * 179.97438 * 18 17 16 40 40 H 1.08999 * 109.62231 * 68.36822 * 23 16 15 41 41 H 1.08997 * 109.62135 * 188.74780 * 23 16 15 42 42 H 1.08998 * 109.48323 * 296.27780 * 24 12 11 43 43 H 1.09002 * 109.47870 * 56.31693 * 24 12 11 44 44 H 1.08005 * 120.00199 * 0.02562 * 25 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1982 1.1971 0.0000 4 6 3.5806 1.1971 -0.0054 5 6 4.3341 2.5020 -0.0117 6 6 4.2717 -0.0001 -0.0004 7 6 3.5805 -1.1973 0.0001 8 16 4.4614 -2.7232 0.0009 9 8 5.7445 -2.4456 0.5448 10 8 3.5798 -3.6952 0.5462 11 7 4.7059 -3.1488 -1.5807 12 6 5.5539 -2.3187 -2.4398 13 1 6.2648 -1.7679 -1.8239 14 6 6.3159 -3.2133 -3.4190 15 6 7.2713 -2.3551 -4.2549 16 6 6.4748 -1.2492 -4.9113 17 6 6.5671 -1.0209 -6.2680 18 7 7.3547 -1.7695 -7.0087 19 14 5.5722 0.3509 -7.0539 20 1 6.3642 1.6071 -7.0403 21 1 5.2474 -0.0142 -8.4562 22 1 4.3143 0.5504 -6.2903 23 6 5.5741 -0.4005 -4.0413 24 6 4.6803 -1.3296 -3.2133 25 6 2.1981 -1.1972 0.0005 26 1 -0.3633 0.0000 -1.0277 27 1 -0.3635 -0.8899 0.5139 28 1 -0.3633 0.8901 0.5137 29 1 1.6582 2.1324 -0.0005 30 1 4.5197 2.8194 1.0145 31 1 5.2846 2.3703 -0.5288 32 1 3.7431 3.2604 -0.5252 33 1 5.3517 -0.0002 -0.0003 34 1 4.2879 -3.9477 -1.9382 35 1 6.8871 -3.9569 -2.8631 36 1 5.6082 -3.7166 -4.0778 37 1 8.0350 -1.9223 -3.6088 38 1 7.7446 -2.9722 -5.0187 39 1 7.4193 -1.6092 -7.9631 40 1 6.1808 0.2132 -3.3755 41 1 4.9569 0.2414 -4.6699 42 1 4.0114 -1.8773 -3.8771 43 1 4.0923 -0.7380 -2.5115 44 1 1.6580 -2.1325 0.0005 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001259526236.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:16:29 Heat of formation + Delta-G solvation = -77.496196 kcal Electronic energy + Delta-G solvation = -26266.008447 eV Core-core repulsion = 22694.880486 eV Total energy + Delta-G solvation = -3571.127961 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 323.134 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -39.61813 -37.60919 -36.95643 -35.68781 -33.72017 -33.70159 -32.37312 -31.29005 -29.67909 -27.57107 -26.97806 -26.81438 -23.15628 -22.11783 -21.53891 -20.94687 -19.68230 -19.05338 -17.47461 -17.15305 -16.31138 -16.07385 -15.97230 -15.36288 -14.50269 -14.46690 -14.26030 -13.93801 -13.36698 -13.31152 -13.18377 -12.98349 -12.71875 -12.55488 -12.45675 -12.26354 -12.23607 -12.18235 -11.96277 -11.93286 -11.85377 -11.47419 -11.27280 -11.08987 -10.95401 -10.66217 -10.62260 -10.26087 -10.02613 -9.72107 -9.27890 -9.22995 -8.94990 -8.71697 -8.54635 -8.44515 -6.14104 -4.05200 0.53543 0.84207 1.19966 3.13024 3.22963 3.31148 3.31922 3.45074 3.92927 4.33634 4.37173 4.57213 4.76528 4.88707 5.06978 5.11647 5.13676 5.19644 5.35617 5.39500 5.40857 5.50533 5.61352 5.69820 5.76073 5.88937 5.93980 6.01604 6.04665 6.06003 6.23313 6.35479 6.44297 6.53408 6.70608 6.78013 6.78592 6.97338 7.01024 7.10091 7.29467 7.39098 7.61419 7.70532 7.80213 8.33961 8.92559 9.50118 10.95353 Molecular weight = 323.13amu Principal moments of inertia in cm(-1) A = 0.012471 B = 0.005017 C = 0.004133 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2244.598420 B = 5579.157996 C = 6773.713682 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.114 4.114 2 C -0.106 4.106 3 C -0.069 4.069 4 C -0.100 4.100 5 C -0.116 4.116 6 C -0.020 4.020 7 C -0.661 4.661 8 S 2.691 3.309 9 O -0.959 6.959 10 O -0.972 6.972 11 N -1.110 6.110 12 C 0.157 3.843 13 H 0.081 0.919 14 C -0.109 4.109 15 C 0.010 3.990 16 C -0.488 4.488 17 C 0.077 3.923 18 N -0.889 5.889 19 Si 0.885 3.115 20 H -0.278 1.278 21 H -0.290 1.290 22 H -0.265 1.265 23 C -0.019 4.019 24 C -0.124 4.124 25 C -0.027 4.027 26 H 0.073 0.927 27 H 0.069 0.931 28 H 0.066 0.934 29 H 0.126 0.874 30 H 0.071 0.929 31 H 0.074 0.926 32 H 0.068 0.932 33 H 0.140 0.860 34 H 0.415 0.585 35 H 0.039 0.961 36 H 0.056 0.944 37 H 0.007 0.993 38 H 0.061 0.939 39 H 0.264 0.736 40 H 0.018 0.982 41 H 0.036 0.964 42 H 0.058 0.942 43 H 0.037 0.963 44 H 0.137 0.863 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.014 4.505 12.649 17.367 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C -0.107 4.107 3 C -0.087 4.087 4 C -0.101 4.101 5 C -0.173 4.173 6 C -0.039 4.039 7 C -0.747 4.747 8 S 2.781 3.219 9 O -0.949 6.949 10 O -0.962 6.962 11 N -0.870 5.870 12 C 0.052 3.948 13 H 0.099 0.901 14 C -0.149 4.149 15 C -0.028 4.028 16 C -0.507 4.507 17 C -0.126 4.126 18 N -0.526 5.526 19 Si 0.714 3.286 20 H -0.204 1.204 21 H -0.217 1.217 22 H -0.190 1.190 23 C -0.057 4.057 24 C -0.164 4.164 25 C -0.046 4.046 26 H 0.091 0.909 27 H 0.088 0.912 28 H 0.085 0.915 29 H 0.144 0.856 30 H 0.090 0.910 31 H 0.093 0.907 32 H 0.087 0.913 33 H 0.158 0.842 34 H 0.249 0.751 35 H 0.058 0.942 36 H 0.075 0.925 37 H 0.026 0.974 38 H 0.079 0.921 39 H 0.074 0.926 40 H 0.036 0.964 41 H 0.054 0.946 42 H 0.076 0.924 43 H 0.056 0.944 44 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges -10.589 4.172 13.280 17.490 hybrid contribution -1.155 1.006 -1.087 1.878 sum -11.743 5.178 12.193 17.702 Atomic orbital electron populations 1.20798 0.90639 1.02939 1.02675 1.19978 0.96373 0.93068 1.01317 1.21184 0.93671 0.97707 0.96179 1.20015 0.93902 0.95633 1.00565 1.20827 1.00519 0.93483 1.02475 1.20827 1.00248 0.90608 0.92205 1.30979 1.06284 1.20383 1.17058 1.01850 0.73738 0.73433 0.72905 1.93580 1.39119 1.85483 1.76758 1.93553 1.67088 1.58481 1.77071 1.55662 1.63458 1.37307 1.30561 1.20949 0.90823 0.91469 0.91545 0.90084 1.21899 0.99048 0.97393 0.96544 1.19385 0.93551 0.94849 0.95001 1.20032 1.24053 1.14879 0.91737 1.24835 0.95191 0.95913 0.96640 1.69825 1.37809 1.38724 1.06246 0.86713 0.81169 0.82590 0.78168 1.20412 1.21667 1.19022 1.19785 0.94958 0.95022 0.95917 1.22107 0.98284 0.97703 0.98304 1.20721 0.91876 0.98604 0.93376 0.90875 0.91234 0.91467 0.85563 0.91031 0.90670 0.91336 0.84232 0.75111 0.94191 0.92513 0.97417 0.92069 0.92561 0.96386 0.94558 0.92362 0.94446 0.84564 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.95 10.01 36.01 0.36 -0.59 16 2 C -0.11 -1.22 5.88 -104.62 -0.62 -1.84 16 3 C -0.07 -0.77 9.36 -39.58 -0.37 -1.14 16 4 C -0.10 -1.23 5.88 -104.63 -0.62 -1.84 16 5 C -0.12 -1.14 10.01 36.00 0.36 -0.78 16 6 C -0.02 -0.28 8.29 -39.58 -0.33 -0.60 16 7 C -0.66 -9.51 4.95 -39.58 -0.20 -9.70 16 8 S 2.69 41.97 5.72 -107.50 -0.61 41.35 16 9 O -0.96 -17.41 16.62 -57.17 -0.95 -18.36 16 10 O -0.97 -16.35 17.28 -57.17 -0.99 -17.34 16 11 N -1.11 -17.03 5.47 -4.92 -0.03 -17.05 16 12 C 0.16 2.86 2.68 -67.97 -0.18 2.68 16 13 H 0.08 1.51 7.50 -51.93 -0.39 1.12 16 14 C -0.11 -2.18 5.46 -26.63 -0.15 -2.33 16 15 C 0.01 0.25 5.96 -27.48 -0.16 0.08 16 16 C -0.49 -12.26 5.51 -98.92 -0.55 -12.80 16 17 C 0.08 2.03 5.46 -17.82 -0.10 1.94 16 18 N -0.89 -24.83 12.73 55.43 0.71 -24.12 16 19 Si 0.89 20.39 27.53 -169.99 -4.68 15.71 16 20 H -0.28 -6.38 7.11 56.52 0.40 -5.97 16 21 H -0.29 -6.74 7.11 56.52 0.40 -6.34 16 22 H -0.26 -5.88 6.11 56.52 0.35 -5.53 16 23 C -0.02 -0.41 5.59 -27.49 -0.15 -0.56 16 24 C -0.12 -2.36 5.54 -26.64 -0.15 -2.51 16 25 C -0.03 -0.35 9.18 -39.58 -0.36 -0.71 16 26 H 0.07 0.58 8.14 -51.93 -0.42 0.15 16 27 H 0.07 0.53 8.09 -51.93 -0.42 0.11 16 28 H 0.07 0.46 8.09 -51.93 -0.42 0.04 16 29 H 0.13 1.07 8.06 -52.49 -0.42 0.65 16 30 H 0.07 0.60 8.14 -51.93 -0.42 0.17 16 31 H 0.07 0.75 8.09 -51.93 -0.42 0.33 16 32 H 0.07 0.58 8.09 -51.93 -0.42 0.16 16 33 H 0.14 1.92 7.62 -52.49 -0.40 1.52 16 34 H 0.41 5.50 8.83 -34.47 -0.30 5.19 16 35 H 0.04 0.74 8.14 -51.93 -0.42 0.31 16 36 H 0.06 1.14 8.14 -51.93 -0.42 0.72 16 37 H 0.01 0.18 8.14 -51.93 -0.42 -0.24 16 38 H 0.06 1.60 7.08 -51.93 -0.37 1.23 16 39 H 0.26 7.04 8.31 -40.82 -0.34 6.70 16 40 H 0.02 0.38 8.14 -51.93 -0.42 -0.04 16 41 H 0.04 0.80 4.59 -51.93 -0.24 0.56 16 42 H 0.06 1.13 8.14 -51.93 -0.42 0.70 16 43 H 0.04 0.64 6.09 -51.93 -0.32 0.32 16 44 H 0.14 1.59 7.62 -52.48 -0.40 1.19 16 LS Contribution 360.49 15.07 5.43 5.43 Total: -1.00 -31.03 360.49 -10.99 -42.03 By element: Atomic # 1 Polarization: 9.73 SS G_CDS: -6.67 Total: 3.07 kcal Atomic # 6 Polarization: -27.51 SS G_CDS: -3.20 Total: -30.71 kcal Atomic # 7 Polarization: -41.85 SS G_CDS: 0.68 Total: -41.17 kcal Atomic # 8 Polarization: -33.76 SS G_CDS: -1.94 Total: -35.70 kcal Atomic # 14 Polarization: 20.39 SS G_CDS: -4.68 Total: 15.71 kcal Atomic # 16 Polarization: 41.97 SS G_CDS: -0.61 Total: 41.35 kcal Total LS contribution 5.43 Total: 5.43 kcal Total: -31.03 -10.99 -42.03 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001259526236.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -35.470 kcal (2) G-P(sol) polarization free energy of solvation -31.033 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.503 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.993 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.026 kcal (6) G-S(sol) free energy of system = (1) + (5) -77.496 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds