Wall clock time and date at job start Tue Mar 31 2020 14:16:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.38234 * 120.00257 * 2 1 4 4 C 1.38233 * 120.00037 * 180.25732 * 3 2 1 5 5 C 1.50693 * 120.00207 * 179.72405 * 4 3 2 6 6 C 1.38238 * 119.99747 * 359.50225 * 4 3 2 7 7 C 1.38234 * 120.00056 * 0.47382 * 6 4 3 8 8 S 1.76199 * 120.00031 * 179.78886 * 7 6 4 9 9 O 1.42098 * 106.40483 * 23.51480 * 8 7 6 10 10 O 1.42107 * 106.40274 * 156.43886 * 8 7 6 11 11 N 1.65601 * 107.21620 * 269.97364 * 8 7 6 12 12 C 1.46501 * 119.99590 * 65.00305 * 11 8 7 13 13 H 1.08997 * 109.42011 * 25.13924 * 12 11 8 14 14 C 1.52966 * 109.41304 * 144.99986 * 12 11 8 15 15 C 1.53228 * 109.40632 * 183.70232 * 14 12 11 16 16 C 1.51272 * 108.53586 * 305.37224 * 15 14 12 17 17 C 1.37877 * 120.84717 * 231.36664 * 16 15 14 18 18 N 1.31505 * 120.00349 * 0.02562 * 17 16 15 19 19 Si 1.86801 * 119.99524 * 179.97438 * 17 16 15 20 20 H 1.48503 * 109.46918 * 90.00632 * 19 17 16 21 21 H 1.48497 * 109.46848 * 210.00032 * 19 17 16 22 22 H 1.48502 * 109.47666 * 330.00162 * 19 17 16 23 23 C 1.51277 * 118.29894 * 51.34577 * 16 15 14 24 24 C 1.52962 * 109.41361 * 265.34730 * 12 11 8 25 25 C 1.38235 * 119.99522 * 179.97438 * 2 1 3 26 26 H 1.09002 * 109.46776 * 89.99941 * 1 2 3 27 27 H 1.08999 * 109.47786 * 210.00481 * 1 2 3 28 28 H 1.08998 * 109.46961 * 330.00864 * 1 2 3 29 29 H 1.08002 * 119.99744 * 359.97115 * 3 2 1 30 30 H 1.09000 * 109.47363 * 89.99511 * 5 4 3 31 31 H 1.09000 * 109.47097 * 209.99342 * 5 4 3 32 32 H 1.09001 * 109.47081 * 329.99847 * 5 4 3 33 33 H 1.07999 * 119.99919 * 180.25938 * 6 4 3 34 34 H 0.97000 * 120.00187 * 244.99383 * 11 8 7 35 35 H 1.09006 * 109.48011 * 303.68493 * 14 12 11 36 36 H 1.08996 * 109.48084 * 63.70580 * 14 12 11 37 37 H 1.08997 * 109.62501 * 65.08282 * 15 14 12 38 38 H 1.08999 * 109.62677 * 185.46681 * 15 14 12 39 39 H 0.96997 * 120.00320 * 179.97438 * 18 17 16 40 40 H 1.08999 * 109.62231 * 68.36822 * 23 16 15 41 41 H 1.08997 * 109.62135 * 188.74780 * 23 16 15 42 42 H 1.08998 * 109.48323 * 296.27780 * 24 12 11 43 43 H 1.09002 * 109.47870 * 56.31693 * 24 12 11 44 44 H 1.08005 * 120.00199 * 0.02562 * 25 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1982 1.1971 0.0000 4 6 3.5806 1.1971 -0.0054 5 6 4.3341 2.5020 -0.0117 6 6 4.2717 -0.0001 -0.0004 7 6 3.5805 -1.1973 0.0001 8 16 4.4614 -2.7232 0.0009 9 8 5.7445 -2.4456 0.5448 10 8 3.5798 -3.6952 0.5462 11 7 4.7059 -3.1488 -1.5807 12 6 5.5539 -2.3187 -2.4398 13 1 6.2648 -1.7679 -1.8239 14 6 6.3159 -3.2133 -3.4190 15 6 7.2713 -2.3551 -4.2549 16 6 6.4748 -1.2492 -4.9113 17 6 6.5671 -1.0209 -6.2680 18 7 7.3547 -1.7695 -7.0087 19 14 5.5722 0.3509 -7.0539 20 1 6.3642 1.6071 -7.0403 21 1 5.2474 -0.0142 -8.4562 22 1 4.3143 0.5504 -6.2903 23 6 5.5741 -0.4005 -4.0413 24 6 4.6803 -1.3296 -3.2133 25 6 2.1981 -1.1972 0.0005 26 1 -0.3633 0.0000 -1.0277 27 1 -0.3635 -0.8899 0.5139 28 1 -0.3633 0.8901 0.5137 29 1 1.6582 2.1324 -0.0005 30 1 4.5197 2.8194 1.0145 31 1 5.2846 2.3703 -0.5288 32 1 3.7431 3.2604 -0.5252 33 1 5.3517 -0.0002 -0.0003 34 1 4.2879 -3.9477 -1.9382 35 1 6.8871 -3.9569 -2.8631 36 1 5.6082 -3.7166 -4.0778 37 1 8.0350 -1.9223 -3.6088 38 1 7.7446 -2.9722 -5.0187 39 1 7.4193 -1.6092 -7.9631 40 1 6.1808 0.2132 -3.3755 41 1 4.9569 0.2414 -4.6699 42 1 4.0114 -1.8773 -3.8771 43 1 4.0923 -0.7380 -2.5115 44 1 1.6580 -2.1325 0.0005 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001259526236.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:16:28 Heat of formation + Delta-G solvation = -96.893203 kcal Electronic energy + Delta-G solvation = -26266.849564 eV Core-core repulsion = 22694.880486 eV Total energy + Delta-G solvation = -3571.969078 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 323.134 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -40.52606 -39.18013 -38.31011 -37.01558 -35.41841 -34.51592 -33.29782 -33.04726 -31.41217 -28.64130 -28.29431 -27.72822 -24.17605 -23.88310 -23.24350 -21.81574 -21.28639 -20.35764 -18.78958 -18.30999 -17.83942 -17.32621 -17.05357 -16.59333 -16.37945 -15.78890 -15.10423 -15.00921 -14.78549 -14.60983 -14.26308 -14.09265 -14.04840 -14.01108 -13.98091 -13.40143 -13.30439 -13.22393 -13.18314 -13.14229 -12.92308 -12.88721 -12.76769 -12.61771 -12.35549 -12.11678 -11.92114 -11.83159 -11.69795 -11.38951 -10.90178 -10.75926 -10.52891 -10.22529 -10.04172 -9.61966 -8.13328 -6.07459 -0.65905 -0.17365 0.27721 1.40857 1.43386 1.51096 1.94706 2.43095 2.43260 2.74985 3.14255 3.26424 3.77394 3.78921 3.92999 4.03287 4.18483 4.25651 4.31619 4.34638 4.44324 4.53076 4.59990 4.77723 4.80404 4.80980 4.83983 4.94266 4.95666 5.03137 5.05425 5.10052 5.15370 5.27659 5.29197 5.30120 5.39063 5.47071 5.48445 5.62603 5.68683 5.79982 5.85586 5.90748 6.14101 6.38464 6.98981 7.50340 8.97551 Molecular weight = 323.13amu Principal moments of inertia in cm(-1) A = 0.012471 B = 0.005017 C = 0.004133 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2244.598420 B = 5579.157996 C = 6773.713682 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.114 4.114 2 C -0.106 4.106 3 C -0.068 4.068 4 C -0.105 4.105 5 C -0.117 4.117 6 C -0.044 4.044 7 C -0.669 4.669 8 S 2.706 3.294 9 O -0.989 6.989 10 O -0.985 6.985 11 N -1.104 6.104 12 C 0.167 3.833 13 H 0.077 0.923 14 C -0.103 4.103 15 C 0.005 3.995 16 C -0.495 4.495 17 C 0.022 3.978 18 N -0.932 5.932 19 Si 0.937 3.063 20 H -0.276 1.276 21 H -0.296 1.296 22 H -0.246 1.246 23 C -0.022 4.022 24 C -0.117 4.117 25 C -0.042 4.042 26 H 0.081 0.919 27 H 0.075 0.925 28 H 0.086 0.914 29 H 0.158 0.842 30 H 0.085 0.915 31 H 0.067 0.933 32 H 0.085 0.915 33 H 0.133 0.867 34 H 0.425 0.575 35 H 0.053 0.947 36 H 0.055 0.945 37 H 0.002 0.998 38 H 0.029 0.971 39 H 0.261 0.739 40 H 0.025 0.975 41 H 0.038 0.962 42 H 0.056 0.944 43 H 0.060 0.940 44 H 0.145 0.855 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.772 6.301 13.870 20.537 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C -0.107 4.107 3 C -0.086 4.086 4 C -0.106 4.106 5 C -0.174 4.174 6 C -0.064 4.064 7 C -0.758 4.758 8 S 2.799 3.201 9 O -0.979 6.979 10 O -0.975 6.975 11 N -0.864 5.864 12 C 0.061 3.939 13 H 0.095 0.905 14 C -0.143 4.143 15 C -0.033 4.033 16 C -0.514 4.514 17 C -0.176 4.176 18 N -0.572 5.572 19 Si 0.764 3.236 20 H -0.202 1.202 21 H -0.223 1.223 22 H -0.171 1.171 23 C -0.060 4.060 24 C -0.157 4.157 25 C -0.061 4.061 26 H 0.099 0.901 27 H 0.094 0.906 28 H 0.105 0.895 29 H 0.176 0.824 30 H 0.104 0.896 31 H 0.086 0.914 32 H 0.104 0.896 33 H 0.151 0.849 34 H 0.261 0.739 35 H 0.072 0.928 36 H 0.073 0.927 37 H 0.020 0.980 38 H 0.048 0.952 39 H 0.071 0.929 40 H 0.043 0.957 41 H 0.056 0.944 42 H 0.074 0.926 43 H 0.078 0.922 44 H 0.162 0.838 Dipole moment (debyes) X Y Z Total from point charges -13.346 5.933 14.520 20.595 hybrid contribution -0.301 0.472 -1.376 1.486 sum -13.647 6.405 13.144 20.001 Atomic orbital electron populations 1.20884 0.88322 1.04291 1.03546 1.20379 0.98091 0.92510 0.99759 1.21603 0.93352 0.98988 0.94636 1.20336 0.94746 0.95819 0.99735 1.20896 1.00184 0.92743 1.03559 1.20938 1.00219 0.91410 0.93818 1.30615 1.06844 1.19206 1.19137 1.01153 0.73048 0.73602 0.72341 1.93539 1.41022 1.86032 1.77347 1.93530 1.67162 1.59606 1.77195 1.55401 1.63298 1.37637 1.30087 1.20639 0.90857 0.91157 0.91242 0.90452 1.21735 0.98557 0.97337 0.96623 1.19352 0.94246 0.95058 0.94662 1.20633 1.23706 1.14894 0.92213 1.25596 0.96407 0.98063 0.97532 1.69972 1.40072 1.40901 1.06281 0.85864 0.80618 0.80021 0.77115 1.20171 1.22268 1.17068 1.19811 0.95007 0.95220 0.95944 1.21991 0.97855 0.97468 0.98339 1.20971 0.91411 0.99924 0.93835 0.90088 0.90597 0.89544 0.82442 0.89626 0.91416 0.89607 0.84947 0.73900 0.92805 0.92664 0.97979 0.95234 0.92935 0.95706 0.94361 0.92566 0.92168 0.83760 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.46 10.01 71.24 0.71 -0.75 16 2 C -0.11 -2.08 5.88 -19.87 -0.12 -2.20 16 3 C -0.07 -1.26 9.36 22.27 0.21 -1.05 16 4 C -0.11 -2.30 5.88 -19.87 -0.12 -2.42 16 5 C -0.12 -1.96 10.01 71.23 0.71 -1.25 16 6 C -0.04 -1.18 8.29 22.27 0.18 -1.00 16 7 C -0.67 -18.26 4.95 22.27 0.11 -18.15 16 8 S 2.71 82.26 5.72 -56.49 -0.32 81.94 16 9 O -0.99 -35.80 16.62 -128.00 -2.13 -37.93 16 10 O -0.98 -32.19 17.28 -128.00 -2.21 -34.41 16 11 N -1.10 -32.60 5.47 -169.49 -0.93 -33.53 16 12 C 0.17 5.92 2.68 44.97 0.12 6.04 16 13 H 0.08 2.83 7.50 -2.39 -0.02 2.81 16 14 C -0.10 -4.11 5.46 30.66 0.17 -3.94 16 15 C 0.01 0.25 5.96 30.11 0.18 0.43 16 16 C -0.50 -24.95 5.51 -16.17 -0.09 -25.04 16 17 C 0.02 1.18 5.46 84.66 0.46 1.64 16 18 N -0.93 -53.69 12.73 21.45 0.27 -53.42 16 19 Si 0.94 41.61 27.53 68.60 1.89 43.50 16 20 H -0.28 -12.05 7.11 99.48 0.71 -11.35 16 21 H -0.30 -13.30 7.11 99.48 0.71 -12.59 16 22 H -0.25 -10.09 6.11 99.48 0.61 -9.48 16 23 C -0.02 -0.92 5.59 30.11 0.17 -0.75 16 24 C -0.12 -4.23 5.54 30.66 0.17 -4.07 16 25 C -0.04 -1.00 9.18 22.27 0.20 -0.80 16 26 H 0.08 0.96 8.14 -2.39 -0.02 0.94 16 27 H 0.08 0.89 8.09 -2.39 -0.02 0.87 16 28 H 0.09 0.79 8.09 -2.39 -0.02 0.77 16 29 H 0.16 1.89 8.06 -2.91 -0.02 1.86 16 30 H 0.09 1.19 8.14 -2.39 -0.02 1.17 16 31 H 0.07 1.23 8.09 -2.39 -0.02 1.21 16 32 H 0.09 1.13 8.09 -2.39 -0.02 1.11 16 33 H 0.13 3.60 7.62 -2.91 -0.02 3.58 16 34 H 0.42 10.70 8.83 -96.74 -0.85 9.84 16 35 H 0.05 1.97 8.14 -2.38 -0.02 1.95 16 36 H 0.05 2.20 8.14 -2.39 -0.02 2.18 16 37 H 0.00 0.09 8.14 -2.39 -0.02 0.07 16 38 H 0.03 1.60 7.08 -2.39 -0.02 1.58 16 39 H 0.26 14.40 8.31 -92.71 -0.77 13.63 16 40 H 0.02 1.01 8.14 -2.39 -0.02 0.99 16 41 H 0.04 1.60 4.59 -2.39 -0.01 1.59 16 42 H 0.06 2.06 8.14 -2.39 -0.02 2.04 16 43 H 0.06 1.92 6.09 -2.39 -0.01 1.90 16 44 H 0.14 3.08 7.62 -2.91 -0.02 3.06 16 Total: -1.00 -67.09 360.49 -0.29 -67.38 By element: Atomic # 1 Polarization: 19.71 SS G_CDS: 0.05 Total: 19.76 kcal Atomic # 6 Polarization: -56.38 SS G_CDS: 3.08 Total: -53.30 kcal Atomic # 7 Polarization: -86.30 SS G_CDS: -0.65 Total: -86.95 kcal Atomic # 8 Polarization: -68.00 SS G_CDS: -4.34 Total: -72.34 kcal Atomic # 14 Polarization: 41.61 SS G_CDS: 1.89 Total: 43.50 kcal Atomic # 16 Polarization: 82.26 SS G_CDS: -0.32 Total: 81.94 kcal Total: -67.09 -0.29 -67.38 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001259526236.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -29.509 kcal (2) G-P(sol) polarization free energy of solvation -67.092 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -96.600 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.293 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.385 kcal (6) G-S(sol) free energy of system = (1) + (5) -96.893 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds