Wall clock time and date at job start Tue Mar 31 2020 14:26:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 C 1.38240 * 119.99751 * 2 1 4 4 C 1.38231 * 119.99561 * 180.02562 * 3 2 1 5 5 C 1.50702 * 119.99659 * 179.97438 * 4 3 2 6 6 C 1.38228 * 120.00495 * 359.97438 * 4 3 2 7 7 C 1.38239 * 119.99933 * 359.95205 * 6 4 3 8 8 S 1.76198 * 120.00328 * 180.02562 * 7 6 4 9 9 O 1.42103 * 106.40028 * 328.80101 * 8 7 6 10 10 O 1.42102 * 106.40624 * 195.88296 * 8 7 6 11 11 N 1.65597 * 107.21846 * 82.34109 * 8 7 6 12 12 C 1.46500 * 120.00112 * 65.27395 * 11 8 7 13 13 C 1.50695 * 110.01729 * 305.21687 * 12 11 8 14 14 H 1.08000 * 120.00112 * 115.25391 * 13 12 11 15 15 C 1.37877 * 119.99994 * 295.24817 * 13 12 11 16 16 N 1.31507 * 120.00230 * 185.67020 * 15 13 12 17 17 Si 1.86803 * 119.99858 * 5.94790 * 15 13 12 18 18 H 1.48493 * 109.47376 * 274.85521 * 17 15 13 19 19 H 1.48505 * 109.46988 * 34.85381 * 17 15 13 20 20 H 1.48497 * 109.47430 * 154.85369 * 17 15 13 21 21 C 1.54268 * 110.02848 * 66.60618 * 12 11 8 22 22 C 1.54962 * 104.16321 * 95.75179 * 21 12 11 23 23 C 1.54894 * 102.77403 * 37.89034 * 22 21 12 24 24 C 1.53869 * 110.03323 * 183.81735 * 12 11 8 25 25 C 1.38230 * 120.00079 * 180.20379 * 2 1 3 26 26 H 1.09000 * 109.46553 * 94.98492 * 1 2 3 27 27 H 1.08997 * 109.47104 * 214.98628 * 1 2 3 28 28 H 1.08996 * 109.47170 * 334.98731 * 1 2 3 29 29 H 1.08003 * 120.00131 * 0.02562 * 3 2 1 30 30 H 1.08993 * 109.47049 * 270.02201 * 5 4 3 31 31 H 1.09000 * 109.47394 * 30.02716 * 5 4 3 32 32 H 1.09000 * 109.46897 * 150.02376 * 5 4 3 33 33 H 1.07999 * 120.00306 * 179.97438 * 6 4 3 34 34 H 0.97005 * 119.99697 * 245.28004 * 11 8 7 35 35 H 0.97005 * 120.00356 * 174.97691 * 16 15 13 36 36 H 1.09006 * 110.48444 * 214.40314 * 21 12 11 37 37 H 1.09006 * 110.48524 * 337.04094 * 21 12 11 38 38 H 1.08995 * 110.72186 * 279.57413 * 22 21 12 39 39 H 1.09007 * 110.92469 * 156.29023 * 22 21 12 40 40 H 1.08997 * 110.48297 * 203.40579 * 23 22 21 41 41 H 1.08991 * 110.49001 * 80.76016 * 23 22 21 42 42 H 1.09001 * 110.03258 * 359.95643 * 24 12 11 43 43 H 1.09009 * 110.02863 * 121.38242 * 24 12 11 44 44 H 1.07998 * 119.99938 * 0.03046 * 25 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1982 1.1972 0.0000 4 6 3.5805 1.1972 -0.0005 5 6 4.3340 2.5023 -0.0011 6 6 4.2717 0.0001 -0.0005 7 6 3.5806 -1.1971 0.0010 8 16 4.4615 -2.7230 0.0017 9 8 5.6715 -2.4881 -0.7056 10 8 3.5265 -3.7265 -0.3698 11 7 4.8903 -3.0408 1.5693 12 6 3.8558 -3.3027 2.5730 13 6 2.8641 -2.1684 2.5997 14 1 1.8373 -2.3419 2.3132 15 6 3.2675 -0.9090 2.9900 16 7 2.3816 0.0541 3.1208 17 14 5.0734 -0.5689 3.3255 18 1 5.3969 -0.9474 4.7244 19 1 5.9089 -1.3655 2.3913 20 1 5.3500 0.8766 3.1272 21 6 3.1340 -4.6283 2.2543 22 6 3.8647 -5.6778 3.1296 23 6 4.1450 -4.8973 4.4378 24 6 4.4988 -3.4736 3.9604 25 6 2.1982 -1.1971 -0.0043 26 1 -0.3632 -0.0893 -1.0238 27 1 -0.3633 -0.8419 0.5892 28 1 -0.3633 0.9312 0.4345 29 1 1.6582 2.1325 0.0004 30 1 4.5149 2.8169 -1.0289 31 1 3.7453 3.2620 0.5132 32 1 5.2868 2.3720 0.5120 33 1 5.3517 0.0001 -0.0014 34 1 5.8265 -3.0534 1.8230 35 1 2.6532 0.9194 3.4650 36 1 2.0818 -4.5661 2.5321 37 1 3.2366 -4.8740 1.1973 38 1 4.7967 -5.9907 2.6592 39 1 3.2234 -6.5378 3.3229 40 1 4.9849 -5.3397 4.9734 41 1 3.2564 -4.8783 5.0686 42 1 5.5806 -3.3625 3.8869 43 1 4.0935 -2.7360 4.6532 44 1 1.6582 -2.1324 -0.0081 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001259530021.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:26:53 Heat of formation + Delta-G solvation = -46.000440 kcal Electronic energy + Delta-G solvation = -27994.760201 eV Core-core repulsion = 24424.997999 eV Total energy + Delta-G solvation = -3569.762202 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 323.134 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -38.74545 -38.07356 -36.31470 -35.02626 -33.04034 -32.87641 -31.96371 -31.41857 -28.01197 -27.50434 -26.81491 -26.07377 -23.73515 -22.23393 -20.43797 -20.11774 -19.37174 -18.27647 -16.74887 -16.59924 -16.41026 -15.41312 -15.27388 -15.05560 -14.74137 -14.25735 -13.87529 -13.50316 -13.20341 -12.74808 -12.69613 -12.58459 -12.44370 -12.34917 -12.08586 -12.07590 -11.56798 -11.51302 -11.43561 -11.38232 -11.22739 -11.15436 -10.95625 -10.47146 -10.42092 -10.37298 -10.05117 -10.02669 -9.91369 -9.81260 -9.57328 -9.19845 -8.72199 -8.27435 -8.03596 -7.70800 -6.25468 -4.27818 1.39852 1.82440 2.16779 3.17433 3.27980 3.33034 3.94171 4.28353 4.30055 4.69445 5.13002 5.18851 5.36442 5.44159 5.49817 5.55197 5.64366 5.70972 5.75571 5.91107 5.92468 5.98865 6.11194 6.17237 6.21387 6.24551 6.27504 6.34244 6.43855 6.46771 6.51350 6.61392 6.68341 6.77804 6.82004 6.88954 6.95994 6.99823 7.09784 7.10529 7.27835 7.32664 7.63614 7.75162 8.08095 8.35560 8.79903 9.38628 10.81659 Molecular weight = 323.13amu Principal moments of inertia in cm(-1) A = 0.014092 B = 0.007548 C = 0.007027 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1986.479574 B = 3708.914969 C = 3983.743863 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.103 4.103 2 C -0.083 4.083 3 C -0.058 4.058 4 C -0.112 4.112 5 C -0.107 4.107 6 C -0.043 4.043 7 C -0.618 4.618 8 S 2.696 3.304 9 O -0.998 6.998 10 O -0.972 6.972 11 N -1.106 6.106 12 C 0.268 3.732 13 C -0.541 4.541 14 H 0.088 0.912 15 C 0.109 3.891 16 N -0.850 5.850 17 Si 0.854 3.146 18 H -0.282 1.282 19 H -0.248 1.248 20 H -0.296 1.296 21 C -0.138 4.138 22 C -0.125 4.125 23 C -0.117 4.117 24 C -0.124 4.124 25 C 0.028 3.972 26 H 0.056 0.944 27 H 0.068 0.932 28 H 0.059 0.941 29 H 0.109 0.891 30 H 0.062 0.938 31 H 0.061 0.939 32 H 0.058 0.942 33 H 0.115 0.885 34 H 0.396 0.604 35 H 0.264 0.736 36 H 0.069 0.931 37 H 0.090 0.910 38 H 0.055 0.945 39 H 0.053 0.947 40 H 0.049 0.951 41 H 0.063 0.937 42 H 0.044 0.956 43 H 0.076 0.924 44 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.788 -0.280 -2.384 2.526 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C -0.084 4.084 3 C -0.076 4.076 4 C -0.113 4.113 5 C -0.164 4.164 6 C -0.063 4.063 7 C -0.706 4.706 8 S 2.790 3.210 9 O -0.989 6.989 10 O -0.962 6.962 11 N -0.867 5.867 12 C 0.184 3.816 13 C -0.581 4.581 14 H 0.106 0.894 15 C -0.100 4.100 16 N -0.483 5.483 17 Si 0.683 3.317 18 H -0.208 1.208 19 H -0.172 1.172 20 H -0.223 1.223 21 C -0.177 4.177 22 C -0.162 4.162 23 C -0.155 4.155 24 C -0.164 4.164 25 C 0.009 3.991 26 H 0.075 0.925 27 H 0.087 0.913 28 H 0.078 0.922 29 H 0.128 0.872 30 H 0.081 0.919 31 H 0.080 0.920 32 H 0.077 0.923 33 H 0.133 0.867 34 H 0.230 0.770 35 H 0.074 0.926 36 H 0.088 0.912 37 H 0.109 0.891 38 H 0.074 0.926 39 H 0.072 0.928 40 H 0.068 0.932 41 H 0.081 0.919 42 H 0.063 0.937 43 H 0.094 0.906 44 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges 0.756 -0.589 -3.207 3.347 hybrid contribution 1.187 1.184 1.174 2.047 sum 1.943 0.596 -2.033 2.875 Atomic orbital electron populations 1.20649 0.91798 1.02813 1.00682 1.19599 0.95421 0.93028 1.00318 1.20755 0.93136 0.97041 0.96716 1.19603 0.94031 0.94504 1.03189 1.20699 0.99744 0.94656 1.01322 1.20326 0.98385 0.91381 0.96165 1.30341 1.06272 1.18604 1.15366 1.01340 0.72766 0.74222 0.72701 1.93489 1.46187 1.87019 1.72182 1.93439 1.64434 1.55879 1.82485 1.56778 1.15363 1.86917 1.27663 1.18851 0.84611 0.94058 0.84080 1.21254 0.96587 0.91711 1.48525 0.89415 1.24817 0.96426 0.95694 0.93048 1.69847 1.33964 1.03580 1.40935 0.87552 0.87803 0.77045 0.79329 1.20846 1.17170 1.22350 1.23119 0.99371 0.94047 1.01205 1.22506 0.99746 0.97698 0.96290 1.22281 1.00203 0.95787 0.97244 1.22698 0.98469 0.96764 0.98437 1.20356 0.91578 0.97841 0.89321 0.92537 0.91315 0.92208 0.87247 0.91923 0.92004 0.92261 0.86707 0.76965 0.92580 0.91186 0.89143 0.92580 0.92797 0.93187 0.91860 0.93702 0.90582 0.85346 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.65 10.01 36.01 0.36 -1.29 16 2 C -0.08 -1.58 5.84 -104.62 -0.61 -2.19 16 3 C -0.06 -1.08 9.34 -39.58 -0.37 -1.45 16 4 C -0.11 -2.13 5.88 -104.63 -0.62 -2.74 16 5 C -0.11 -1.67 10.01 36.01 0.36 -1.31 16 6 C -0.04 -0.88 7.08 -39.58 -0.28 -1.17 16 7 C -0.62 -13.05 3.45 -39.58 -0.14 -13.19 16 8 S 2.70 57.06 5.58 -107.50 -0.60 56.46 16 9 O -1.00 -22.44 17.50 -57.17 -1.00 -23.44 16 10 O -0.97 -21.39 14.03 -57.17 -0.80 -22.19 16 11 N -1.11 -22.38 3.35 0.51 0.00 -22.38 16 12 C 0.27 5.53 0.57 -131.86 -0.08 5.45 16 13 C -0.54 -12.55 5.26 -34.44 -0.18 -12.73 16 14 H 0.09 2.23 7.26 -52.49 -0.38 1.85 16 15 C 0.11 2.62 3.62 -17.82 -0.06 2.55 16 16 N -0.85 -21.35 13.91 55.43 0.77 -20.57 16 17 Si 0.85 19.34 21.90 -169.99 -3.72 15.62 16 18 H -0.28 -6.42 6.94 56.52 0.39 -6.03 16 19 H -0.25 -5.18 4.68 56.52 0.26 -4.91 16 20 H -0.30 -7.00 7.11 56.52 0.40 -6.60 16 21 C -0.14 -2.68 5.76 -25.03 -0.14 -2.83 16 22 C -0.12 -2.05 6.91 -24.70 -0.17 -2.22 16 23 C -0.12 -1.93 6.83 -25.07 -0.17 -2.10 16 24 C -0.12 -2.39 4.25 -25.62 -0.11 -2.50 16 25 C 0.03 0.59 6.63 -39.59 -0.26 0.32 16 26 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16 27 H 0.07 1.14 8.12 -51.93 -0.42 0.72 16 28 H 0.06 0.91 8.05 -51.93 -0.42 0.49 16 29 H 0.11 1.77 8.06 -52.48 -0.42 1.35 16 30 H 0.06 0.83 8.14 -51.93 -0.42 0.41 16 31 H 0.06 0.89 8.09 -51.93 -0.42 0.47 16 32 H 0.06 0.92 8.09 -51.93 -0.42 0.50 16 33 H 0.11 2.27 7.80 -52.49 -0.41 1.86 16 34 H 0.40 7.35 6.82 -34.47 -0.23 7.12 16 35 H 0.26 6.59 8.32 -40.82 -0.34 6.25 16 36 H 0.07 1.38 7.72 -51.93 -0.40 0.98 16 37 H 0.09 1.84 5.17 -51.93 -0.27 1.57 16 38 H 0.06 0.88 8.14 -51.93 -0.42 0.46 16 39 H 0.05 0.79 8.14 -51.93 -0.42 0.37 16 40 H 0.05 0.72 8.14 -51.93 -0.42 0.30 16 41 H 0.06 1.02 8.14 -51.93 -0.42 0.60 16 42 H 0.04 0.82 6.75 -51.93 -0.35 0.47 16 43 H 0.08 1.60 6.11 -51.92 -0.32 1.28 16 44 H 0.13 2.62 7.39 -52.49 -0.39 2.23 16 LS Contribution 339.03 15.07 5.11 5.11 Total: -1.00 -27.32 339.03 -9.38 -36.71 By element: Atomic # 1 Polarization: 18.74 SS G_CDS: -6.67 Total: 12.07 kcal Atomic # 6 Polarization: -34.92 SS G_CDS: -2.47 Total: -37.39 kcal Atomic # 7 Polarization: -43.72 SS G_CDS: 0.77 Total: -42.95 kcal Atomic # 8 Polarization: -43.82 SS G_CDS: -1.80 Total: -45.63 kcal Atomic # 14 Polarization: 19.34 SS G_CDS: -3.72 Total: 15.62 kcal Atomic # 16 Polarization: 57.06 SS G_CDS: -0.60 Total: 56.46 kcal Total LS contribution 5.11 Total: 5.11 kcal Total: -27.32 -9.38 -36.71 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001259530021.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.292 kcal (2) G-P(sol) polarization free energy of solvation -27.325 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.617 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.384 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.709 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.000 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds