Wall clock time and date at job start Tue Mar 31 2020 14:26:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 C 1.38240 * 119.99751 * 2 1 4 4 C 1.38231 * 119.99561 * 180.02562 * 3 2 1 5 5 C 1.50702 * 119.99659 * 179.97438 * 4 3 2 6 6 C 1.38228 * 120.00495 * 359.97438 * 4 3 2 7 7 C 1.38239 * 119.99933 * 359.95205 * 6 4 3 8 8 S 1.76198 * 120.00328 * 180.02562 * 7 6 4 9 9 O 1.42103 * 106.40028 * 328.80101 * 8 7 6 10 10 O 1.42102 * 106.40624 * 195.88296 * 8 7 6 11 11 N 1.65597 * 107.21846 * 82.34109 * 8 7 6 12 12 C 1.46500 * 120.00112 * 65.27395 * 11 8 7 13 13 C 1.50695 * 110.01729 * 305.21687 * 12 11 8 14 14 H 1.08000 * 120.00112 * 115.25391 * 13 12 11 15 15 C 1.37877 * 119.99994 * 295.24817 * 13 12 11 16 16 N 1.31507 * 120.00230 * 185.67020 * 15 13 12 17 17 Si 1.86803 * 119.99858 * 5.94790 * 15 13 12 18 18 H 1.48493 * 109.47376 * 274.85521 * 17 15 13 19 19 H 1.48505 * 109.46988 * 34.85381 * 17 15 13 20 20 H 1.48497 * 109.47430 * 154.85369 * 17 15 13 21 21 C 1.54268 * 110.02848 * 66.60618 * 12 11 8 22 22 C 1.54962 * 104.16321 * 95.75179 * 21 12 11 23 23 C 1.54894 * 102.77403 * 37.89034 * 22 21 12 24 24 C 1.53869 * 110.03323 * 183.81735 * 12 11 8 25 25 C 1.38230 * 120.00079 * 180.20379 * 2 1 3 26 26 H 1.09000 * 109.46553 * 94.98492 * 1 2 3 27 27 H 1.08997 * 109.47104 * 214.98628 * 1 2 3 28 28 H 1.08996 * 109.47170 * 334.98731 * 1 2 3 29 29 H 1.08003 * 120.00131 * 0.02562 * 3 2 1 30 30 H 1.08993 * 109.47049 * 270.02201 * 5 4 3 31 31 H 1.09000 * 109.47394 * 30.02716 * 5 4 3 32 32 H 1.09000 * 109.46897 * 150.02376 * 5 4 3 33 33 H 1.07999 * 120.00306 * 179.97438 * 6 4 3 34 34 H 0.97005 * 119.99697 * 245.28004 * 11 8 7 35 35 H 0.97005 * 120.00356 * 174.97691 * 16 15 13 36 36 H 1.09006 * 110.48444 * 214.40314 * 21 12 11 37 37 H 1.09006 * 110.48524 * 337.04094 * 21 12 11 38 38 H 1.08995 * 110.72186 * 279.57413 * 22 21 12 39 39 H 1.09007 * 110.92469 * 156.29023 * 22 21 12 40 40 H 1.08997 * 110.48297 * 203.40579 * 23 22 21 41 41 H 1.08991 * 110.49001 * 80.76016 * 23 22 21 42 42 H 1.09001 * 110.03258 * 359.95643 * 24 12 11 43 43 H 1.09009 * 110.02863 * 121.38242 * 24 12 11 44 44 H 1.07998 * 119.99938 * 0.03046 * 25 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1982 1.1972 0.0000 4 6 3.5805 1.1972 -0.0005 5 6 4.3340 2.5023 -0.0011 6 6 4.2717 0.0001 -0.0005 7 6 3.5806 -1.1971 0.0010 8 16 4.4615 -2.7230 0.0017 9 8 5.6715 -2.4881 -0.7056 10 8 3.5265 -3.7265 -0.3698 11 7 4.8903 -3.0408 1.5693 12 6 3.8558 -3.3027 2.5730 13 6 2.8641 -2.1684 2.5997 14 1 1.8373 -2.3419 2.3132 15 6 3.2675 -0.9090 2.9900 16 7 2.3816 0.0541 3.1208 17 14 5.0734 -0.5689 3.3255 18 1 5.3969 -0.9474 4.7244 19 1 5.9089 -1.3655 2.3913 20 1 5.3500 0.8766 3.1272 21 6 3.1340 -4.6283 2.2543 22 6 3.8647 -5.6778 3.1296 23 6 4.1450 -4.8973 4.4378 24 6 4.4988 -3.4736 3.9604 25 6 2.1982 -1.1971 -0.0043 26 1 -0.3632 -0.0893 -1.0238 27 1 -0.3633 -0.8419 0.5892 28 1 -0.3633 0.9312 0.4345 29 1 1.6582 2.1325 0.0004 30 1 4.5149 2.8169 -1.0289 31 1 3.7453 3.2620 0.5132 32 1 5.2868 2.3720 0.5120 33 1 5.3517 0.0001 -0.0014 34 1 5.8265 -3.0534 1.8230 35 1 2.6532 0.9194 3.4650 36 1 2.0818 -4.5661 2.5321 37 1 3.2366 -4.8740 1.1973 38 1 4.7967 -5.9907 2.6592 39 1 3.2234 -6.5378 3.3229 40 1 4.9849 -5.3397 4.9734 41 1 3.2564 -4.8783 5.0686 42 1 5.5806 -3.3625 3.8869 43 1 4.0935 -2.7360 4.6532 44 1 1.6582 -2.1324 -0.0081 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001259530021.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:26:52 Heat of formation + Delta-G solvation = -62.943993 kcal Electronic energy + Delta-G solvation = -27995.494929 eV Core-core repulsion = 24424.997999 eV Total energy + Delta-G solvation = -3570.496930 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 323.134 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -40.24784 -39.63628 -38.04774 -36.77165 -34.67361 -34.29707 -33.68080 -32.93483 -29.52309 -29.15176 -28.14899 -27.51252 -25.41687 -23.78572 -21.88043 -21.56983 -21.01150 -19.92867 -18.50032 -18.28812 -18.02410 -17.05448 -16.82867 -16.69383 -16.28471 -15.80057 -15.50549 -14.88176 -14.66552 -14.48014 -14.16080 -13.99780 -13.94968 -13.85998 -13.69967 -13.35198 -13.19767 -13.13874 -13.00571 -12.93422 -12.82304 -12.80572 -12.48600 -12.07406 -11.97450 -11.87872 -11.66699 -11.53831 -11.44791 -11.25973 -11.16341 -10.94990 -10.54102 -9.83338 -9.67184 -9.22457 -8.12664 -6.14737 -0.26727 0.25800 0.64528 1.36178 1.44992 1.48017 2.28534 2.44866 2.71735 3.04241 3.33791 3.57583 3.97808 4.00653 4.02865 4.10385 4.21212 4.26985 4.44906 4.49371 4.58915 4.71510 4.73522 4.77812 4.78949 4.90987 4.92646 4.96701 5.00223 5.06737 5.11025 5.19836 5.26589 5.31519 5.36981 5.38394 5.43918 5.45968 5.61712 5.64019 5.74231 5.78545 5.87502 6.26585 6.46784 6.54990 6.89563 7.52569 8.95943 Molecular weight = 323.13amu Principal moments of inertia in cm(-1) A = 0.014092 B = 0.007548 C = 0.007027 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1986.479574 B = 3708.914969 C = 3983.743863 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.100 4.100 2 C -0.089 4.089 3 C -0.064 4.064 4 C -0.116 4.116 5 C -0.107 4.107 6 C -0.064 4.064 7 C -0.628 4.628 8 S 2.703 3.297 9 O -1.012 7.012 10 O -0.984 6.984 11 N -1.103 6.103 12 C 0.265 3.735 13 C -0.533 4.533 14 H 0.058 0.942 15 C 0.091 3.909 16 N -0.875 5.875 17 Si 0.874 3.126 18 H -0.282 1.282 19 H -0.226 1.226 20 H -0.310 1.310 21 C -0.141 4.141 22 C -0.118 4.118 23 C -0.111 4.111 24 C -0.127 4.127 25 C 0.009 3.991 26 H 0.083 0.917 27 H 0.056 0.944 28 H 0.070 0.930 29 H 0.135 0.865 30 H 0.088 0.912 31 H 0.074 0.926 32 H 0.055 0.945 33 H 0.117 0.883 34 H 0.406 0.594 35 H 0.258 0.742 36 H 0.058 0.942 37 H 0.079 0.921 38 H 0.067 0.933 39 H 0.075 0.925 40 H 0.077 0.923 41 H 0.064 0.936 42 H 0.057 0.943 43 H 0.055 0.945 44 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.474 -0.380 -2.224 2.695 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C -0.090 4.090 3 C -0.082 4.082 4 C -0.117 4.117 5 C -0.164 4.164 6 C -0.084 4.084 7 C -0.718 4.718 8 S 2.798 3.202 9 O -1.002 7.002 10 O -0.975 6.975 11 N -0.865 5.865 12 C 0.181 3.819 13 C -0.573 4.573 14 H 0.076 0.924 15 C -0.115 4.115 16 N -0.510 5.510 17 Si 0.702 3.298 18 H -0.209 1.209 19 H -0.149 1.149 20 H -0.238 1.238 21 C -0.180 4.180 22 C -0.156 4.156 23 C -0.149 4.149 24 C -0.167 4.167 25 C -0.010 4.010 26 H 0.101 0.899 27 H 0.075 0.925 28 H 0.089 0.911 29 H 0.153 0.847 30 H 0.107 0.893 31 H 0.093 0.907 32 H 0.074 0.926 33 H 0.134 0.866 34 H 0.242 0.758 35 H 0.068 0.932 36 H 0.077 0.923 37 H 0.097 0.903 38 H 0.085 0.915 39 H 0.093 0.907 40 H 0.096 0.904 41 H 0.083 0.917 42 H 0.075 0.925 43 H 0.074 0.926 44 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges 1.461 -0.719 -3.046 3.454 hybrid contribution 0.903 1.238 1.078 1.873 sum 2.364 0.518 -1.969 3.120 Atomic orbital electron populations 1.20678 0.89867 1.02848 1.02255 1.19989 0.97048 0.92804 0.99157 1.21104 0.93300 0.97849 0.95952 1.20042 0.94604 0.95430 1.01648 1.20773 0.99271 0.93184 1.03150 1.20505 0.98647 0.91911 0.97323 1.30244 1.06503 1.18572 1.16447 1.00967 0.72349 0.74168 0.72675 1.93463 1.46845 1.87260 1.72648 1.93423 1.64652 1.56607 1.82791 1.56502 1.15830 1.86933 1.27276 1.18878 0.84453 0.93668 0.84950 1.21207 0.95862 0.92518 1.47701 0.92390 1.25052 0.97781 0.95619 0.93087 1.69933 1.34720 1.03654 1.42724 0.87233 0.86568 0.76356 0.79595 1.20894 1.14921 1.23850 1.23065 0.99099 0.94631 1.01243 1.22492 1.00218 0.97394 0.95448 1.22265 1.01420 0.93794 0.97408 1.22666 0.98932 0.98310 0.96830 1.20392 0.91647 0.98229 0.90745 0.89879 0.92491 0.91133 0.84696 0.89339 0.90717 0.92599 0.86552 0.75850 0.93202 0.92286 0.90279 0.91474 0.90661 0.90401 0.91687 0.92488 0.92626 0.86310 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -3.12 10.01 71.24 0.71 -2.41 16 2 C -0.09 -3.37 5.84 -19.86 -0.12 -3.48 16 3 C -0.06 -2.29 9.34 22.27 0.21 -2.08 16 4 C -0.12 -4.28 5.88 -19.87 -0.12 -4.39 16 5 C -0.11 -3.11 10.01 71.24 0.71 -2.40 16 6 C -0.06 -2.62 7.08 22.27 0.16 -2.46 16 7 C -0.63 -26.70 3.45 22.27 0.08 -26.62 16 8 S 2.70 114.31 5.58 -56.49 -0.32 113.99 16 9 O -1.01 -45.03 17.50 -128.00 -2.24 -47.27 16 10 O -0.98 -43.73 14.03 -128.00 -1.80 -45.53 16 11 N -1.10 -43.69 3.35 -152.31 -0.51 -44.20 16 12 C 0.27 10.77 0.57 3.58 0.00 10.77 16 13 C -0.53 -25.04 5.26 25.60 0.13 -24.91 16 14 H 0.06 3.05 7.26 -2.91 -0.02 3.03 16 15 C 0.09 4.38 3.62 84.66 0.31 4.68 16 16 N -0.88 -44.42 13.91 21.45 0.30 -44.13 16 17 Si 0.87 38.88 21.90 68.60 1.50 40.38 16 18 H -0.28 -12.51 6.94 99.48 0.69 -11.82 16 19 H -0.23 -9.11 4.68 99.48 0.47 -8.64 16 20 H -0.31 -14.50 7.11 99.48 0.71 -13.80 16 21 C -0.14 -5.38 5.76 31.69 0.18 -5.20 16 22 C -0.12 -3.57 6.91 31.91 0.22 -3.35 16 23 C -0.11 -3.34 6.83 31.67 0.22 -3.13 16 24 C -0.13 -4.70 4.25 31.32 0.13 -4.57 16 25 C 0.01 0.40 6.63 22.27 0.15 0.54 16 26 H 0.08 2.14 8.14 -2.39 -0.02 2.12 16 27 H 0.06 1.90 8.12 -2.39 -0.02 1.88 16 28 H 0.07 2.03 8.05 -2.39 -0.02 2.02 16 29 H 0.14 4.05 8.06 -2.91 -0.02 4.03 16 30 H 0.09 2.11 8.14 -2.39 -0.02 2.09 16 31 H 0.07 1.97 8.09 -2.39 -0.02 1.95 16 32 H 0.05 1.65 8.09 -2.39 -0.02 1.63 16 33 H 0.12 4.57 7.80 -2.91 -0.02 4.55 16 34 H 0.41 14.41 6.82 -96.74 -0.66 13.75 16 35 H 0.26 13.02 8.32 -92.70 -0.77 12.25 16 36 H 0.06 2.34 7.72 -2.38 -0.02 2.32 16 37 H 0.08 3.20 5.17 -2.38 -0.01 3.19 16 38 H 0.07 1.90 8.14 -2.39 -0.02 1.88 16 39 H 0.07 1.98 8.14 -2.38 -0.02 1.96 16 40 H 0.08 1.95 8.14 -2.39 -0.02 1.93 16 41 H 0.06 1.94 8.14 -2.39 -0.02 1.92 16 42 H 0.06 1.94 6.75 -2.39 -0.02 1.93 16 43 H 0.06 2.28 6.11 -2.38 -0.01 2.27 16 44 H 0.12 5.06 7.39 -2.91 -0.02 5.04 16 Total: -1.00 -58.33 339.03 0.01 -58.33 By element: Atomic # 1 Polarization: 37.36 SS G_CDS: 0.09 Total: 37.45 kcal Atomic # 6 Polarization: -71.99 SS G_CDS: 2.98 Total: -69.01 kcal Atomic # 7 Polarization: -88.12 SS G_CDS: -0.21 Total: -88.33 kcal Atomic # 8 Polarization: -88.77 SS G_CDS: -4.04 Total: -92.80 kcal Atomic # 14 Polarization: 38.88 SS G_CDS: 1.50 Total: 40.38 kcal Atomic # 16 Polarization: 114.31 SS G_CDS: -0.32 Total: 113.99 kcal Total: -58.33 0.01 -58.33 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001259530021.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.619 kcal (2) G-P(sol) polarization free energy of solvation -58.332 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.950 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.006 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.325 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.944 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds