Wall clock time and date at job start Tue Mar 31 2020 14:16:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50693 * 1 3 3 C 1.38258 * 120.00034 * 2 1 4 4 C 1.38211 * 120.00201 * 180.21341 * 3 2 1 5 5 C 1.38260 * 119.99987 * 359.84672 * 4 3 2 6 6 C 1.38215 * 119.99681 * 359.96198 * 5 4 3 7 7 C 1.50702 * 119.99534 * 180.02562 * 6 5 4 8 8 S 1.81398 * 109.46754 * 269.97209 * 7 6 5 9 9 O 1.42102 * 110.54819 * 291.62814 * 8 7 6 10 10 O 1.42098 * 110.54389 * 68.37820 * 8 7 6 11 11 N 1.65604 * 104.45055 * 180.02562 * 8 7 6 12 12 C 1.46495 * 120.00095 * 64.99798 * 11 8 7 13 13 H 1.09003 * 109.41361 * 334.86160 * 12 11 8 14 14 C 1.52958 * 109.41363 * 94.64980 * 12 11 8 15 15 C 1.53231 * 109.40522 * 183.70324 * 14 12 11 16 16 C 1.51270 * 108.53797 * 305.37502 * 15 14 12 17 17 C 1.37873 * 120.84893 * 231.36719 * 16 15 14 18 18 N 1.31523 * 119.99968 * 179.97438 * 17 16 15 19 19 Si 1.86804 * 120.00225 * 359.97438 * 17 16 15 20 20 H 1.48500 * 109.46911 * 59.99555 * 19 17 16 21 21 H 1.48494 * 109.47288 * 179.97438 * 19 17 16 22 22 H 1.48501 * 109.46811 * 299.99747 * 19 17 16 23 23 C 1.51267 * 118.30091 * 51.34317 * 16 15 14 24 24 C 1.52957 * 109.41467 * 215.00606 * 12 11 8 25 25 C 1.38211 * 120.00162 * 179.80188 * 2 1 3 26 26 H 1.09001 * 109.47236 * 270.19071 * 1 2 3 27 27 H 1.09000 * 109.47285 * 30.19264 * 1 2 3 28 28 H 1.08993 * 109.47149 * 150.19759 * 1 2 3 29 29 H 1.08004 * 120.00351 * 0.03664 * 3 2 1 30 30 H 1.08002 * 120.00383 * 179.82605 * 4 3 2 31 31 H 1.07996 * 119.99840 * 179.97438 * 5 4 3 32 32 H 1.08993 * 109.47429 * 29.97620 * 7 6 5 33 33 H 1.08998 * 109.46961 * 149.97871 * 7 6 5 34 34 H 0.97004 * 119.99434 * 245.00317 * 11 8 7 35 35 H 1.09001 * 109.48297 * 303.68731 * 14 12 11 36 36 H 1.08999 * 109.48235 * 63.72625 * 14 12 11 37 37 H 1.08997 * 109.62668 * 185.66106 * 15 14 12 38 38 H 1.09003 * 109.62486 * 65.08631 * 15 14 12 39 39 H 0.96997 * 119.99668 * 180.02562 * 18 17 16 40 40 H 1.08999 * 109.62676 * 188.93366 * 23 16 15 41 41 H 1.09008 * 109.62473 * 68.37068 * 23 16 15 42 42 H 1.09001 * 109.48088 * 296.27582 * 24 12 11 43 43 H 1.09000 * 109.48670 * 56.31618 * 24 12 11 44 44 H 1.08002 * 120.00200 * 0.02562 * 25 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.1982 1.1973 0.0000 4 6 3.5803 1.1974 -0.0045 5 6 4.2717 0.0000 -0.0057 6 6 3.5806 -1.1969 -0.0017 7 6 4.3342 -2.5020 -0.0025 8 16 4.6299 -3.0283 -1.7131 9 8 3.4082 -3.3913 -2.3415 10 8 5.5506 -2.1544 -2.3516 11 7 5.4548 -4.4571 -1.5691 12 6 4.8022 -5.6221 -0.9667 13 1 4.0102 -5.2876 -0.2966 14 6 4.1988 -6.4936 -2.0694 15 6 3.4374 -7.6624 -1.4352 16 6 4.3745 -8.3973 -0.5025 17 6 4.5342 -9.7638 -0.5931 18 7 5.3539 -10.3858 0.2261 19 14 3.5865 -10.7318 -1.8793 20 1 3.9443 -10.2381 -3.2334 21 1 3.9332 -12.1715 -1.7702 22 1 2.1288 -10.5549 -1.6572 23 6 5.1323 -7.5947 0.5317 24 6 5.8322 -6.4283 -0.1738 25 6 2.1980 -1.1969 0.0041 26 1 -0.3634 0.0034 1.0277 27 1 -0.3634 0.8882 -0.5168 28 1 -0.3633 -0.8917 -0.5107 29 1 1.6583 2.1327 0.0006 30 1 4.1204 2.1327 -0.0073 31 1 5.3516 0.0001 -0.0096 32 1 5.2884 -2.3709 0.5075 33 1 3.7470 -3.2608 0.5147 34 1 6.3701 -4.5224 -1.8837 35 1 3.5132 -5.8964 -2.6705 36 1 4.9961 -6.8807 -2.7039 37 1 3.0914 -8.3403 -2.2155 38 1 2.5850 -7.2817 -0.8725 39 1 5.4665 -11.3471 0.1621 40 1 5.8751 -8.2290 1.0153 41 1 4.4368 -7.2077 1.2765 42 1 6.5908 -6.8170 -0.8532 43 1 6.3042 -5.7849 0.5687 44 1 1.6581 -2.1323 0.0070 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001259751052.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:16:34 Heat of formation + Delta-G solvation = -94.947340 kcal Electronic energy + Delta-G solvation = -25410.645833 eV Core-core repulsion = 21838.761134 eV Total energy + Delta-G solvation = -3571.884699 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 323.134 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -40.43692 -39.17403 -38.11882 -37.02669 -35.40435 -34.70245 -33.04580 -32.99730 -31.39590 -28.75100 -28.57544 -27.69777 -23.89913 -23.24876 -23.20988 -22.01213 -21.25629 -20.27156 -18.82601 -17.95251 -17.65719 -17.29468 -17.13631 -16.56258 -16.39637 -15.90812 -15.82649 -14.99171 -14.70267 -14.58746 -14.32518 -14.25450 -14.02620 -13.99299 -13.98370 -13.75509 -13.24869 -13.21465 -13.12368 -13.03018 -12.96959 -12.77995 -12.65420 -12.36466 -12.26477 -11.99591 -11.96556 -11.93098 -11.77993 -11.58924 -10.88718 -10.72927 -10.52404 -10.15305 -9.79165 -9.57337 -8.15828 -6.08175 -0.87950 0.34900 0.37947 1.39713 1.42041 1.48562 1.74052 2.41916 2.64942 2.80556 3.12327 3.18066 3.35677 3.72896 3.90284 3.98290 4.11410 4.18511 4.22578 4.37334 4.43277 4.48266 4.50616 4.55859 4.75552 4.79266 4.83126 4.92407 4.99429 5.02096 5.05907 5.13192 5.27066 5.27326 5.30764 5.43941 5.46821 5.48783 5.60535 5.61859 5.69119 5.81838 5.88442 6.00698 6.16433 6.37914 6.98825 7.49688 8.94604 Molecular weight = 323.13amu Principal moments of inertia in cm(-1) A = 0.020977 B = 0.003198 C = 0.003056 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1334.476956 B = 8753.778206 C = 9159.147114 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.117 4.117 2 C -0.096 4.096 3 C -0.117 4.117 4 C -0.119 4.119 5 C -0.129 4.129 6 C -0.107 4.107 7 C -0.570 4.570 8 S 2.610 3.390 9 O -0.985 6.985 10 O -0.987 6.987 11 N -1.109 6.109 12 C 0.169 3.831 13 H 0.087 0.913 14 C -0.125 4.125 15 C -0.016 4.016 16 C -0.499 4.499 17 C 0.026 3.974 18 N -0.928 5.928 19 Si 0.935 3.065 20 H -0.270 1.270 21 H -0.295 1.295 22 H -0.267 1.267 23 C 0.005 3.995 24 C -0.104 4.104 25 C -0.130 4.130 26 H 0.083 0.917 27 H 0.083 0.917 28 H 0.066 0.934 29 H 0.152 0.848 30 H 0.154 0.846 31 H 0.142 0.858 32 H 0.171 0.829 33 H 0.157 0.843 34 H 0.421 0.579 35 H 0.055 0.945 36 H 0.049 0.951 37 H 0.023 0.977 38 H 0.029 0.971 39 H 0.262 0.738 40 H 0.031 0.969 41 H 0.012 0.988 42 H 0.047 0.953 43 H 0.070 0.930 44 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.279 22.819 1.799 23.286 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C -0.096 4.096 3 C -0.135 4.135 4 C -0.137 4.137 5 C -0.148 4.148 6 C -0.109 4.109 7 C -0.700 4.700 8 S 2.707 3.293 9 O -0.975 6.975 10 O -0.978 6.978 11 N -0.868 5.868 12 C 0.063 3.937 13 H 0.105 0.895 14 C -0.165 4.165 15 C -0.054 4.054 16 C -0.518 4.518 17 C -0.173 4.173 18 N -0.569 5.569 19 Si 0.762 3.238 20 H -0.195 1.195 21 H -0.222 1.222 22 H -0.192 1.192 23 C -0.033 4.033 24 C -0.144 4.144 25 C -0.149 4.149 26 H 0.102 0.898 27 H 0.102 0.898 28 H 0.085 0.915 29 H 0.170 0.830 30 H 0.172 0.828 31 H 0.160 0.840 32 H 0.188 0.812 33 H 0.175 0.825 34 H 0.257 0.743 35 H 0.074 0.926 36 H 0.067 0.933 37 H 0.041 0.959 38 H 0.047 0.953 39 H 0.071 0.929 40 H 0.049 0.951 41 H 0.030 0.970 42 H 0.066 0.934 43 H 0.089 0.911 44 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges -4.615 23.039 1.053 23.520 hybrid contribution 0.288 -1.493 -0.078 1.522 sum -4.328 21.546 0.976 21.998 Atomic orbital electron populations 1.20884 0.89243 1.03791 1.03435 1.20305 0.97786 0.92806 0.98712 1.21529 0.94553 0.98436 0.99022 1.21540 0.94741 0.98612 0.98800 1.21479 1.01326 0.92073 0.99935 1.19142 0.93926 0.92824 1.04972 1.29503 1.11743 1.04613 1.24117 1.04900 0.73496 0.72803 0.78123 1.93555 1.48169 1.82219 1.73566 1.93529 1.63747 1.66273 1.74219 1.55556 1.27960 1.25570 1.77707 1.20614 0.94710 0.84749 0.93634 0.89480 1.22035 0.99485 0.97156 0.97799 1.19677 0.95787 0.94623 0.95308 1.20674 1.23409 0.91790 1.15920 1.25497 0.95932 0.98365 0.97490 1.69938 1.38079 1.09460 1.39374 0.85932 0.79980 0.77249 0.80651 1.19549 1.22170 1.19247 1.19363 0.95766 0.93396 0.94757 1.21785 0.97102 0.96913 0.98571 1.21343 0.93465 0.99456 1.00609 0.89828 0.89813 0.91484 0.83004 0.82817 0.84030 0.81154 0.82466 0.74325 0.92597 0.93252 0.95870 0.95276 0.92870 0.95069 0.97009 0.93387 0.91099 0.85118 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.60 10.01 71.23 0.71 -0.89 16 2 C -0.10 -1.81 5.88 -19.87 -0.12 -1.93 16 3 C -0.12 -1.88 9.70 22.27 0.22 -1.66 16 4 C -0.12 -1.97 10.05 22.27 0.22 -1.75 16 5 C -0.13 -2.57 9.70 22.27 0.22 -2.35 16 6 C -0.11 -2.39 5.14 -19.86 -0.10 -2.49 16 7 C -0.57 -11.60 6.09 71.24 0.43 -11.17 16 8 S 2.61 72.88 5.36 -56.49 -0.30 72.58 16 9 O -0.99 -34.59 17.01 -127.65 -2.17 -36.77 16 10 O -0.99 -31.64 18.08 -127.65 -2.31 -33.95 16 11 N -1.11 -30.79 5.36 -169.51 -0.91 -31.70 16 12 C 0.17 5.65 2.45 44.96 0.11 5.76 16 13 H 0.09 2.63 7.14 -2.39 -0.02 2.61 16 14 C -0.13 -4.94 5.53 30.66 0.17 -4.77 16 15 C -0.02 -0.70 5.59 30.11 0.17 -0.53 16 16 C -0.50 -25.24 5.51 -16.17 -0.09 -25.33 16 17 C 0.03 1.38 5.46 84.65 0.46 1.84 16 18 N -0.93 -53.27 12.73 21.45 0.27 -53.00 16 19 Si 0.93 43.42 26.80 68.60 1.84 45.26 16 20 H -0.27 -12.26 7.11 99.48 0.71 -11.56 16 21 H -0.29 -13.69 7.11 99.48 0.71 -12.99 16 22 H -0.27 -12.01 7.11 99.48 0.71 -11.30 16 23 C 0.01 0.25 5.97 30.10 0.18 0.43 16 24 C -0.10 -3.79 5.46 30.66 0.17 -3.62 16 25 C -0.13 -2.91 9.36 22.27 0.21 -2.70 16 26 H 0.08 0.95 8.14 -2.39 -0.02 0.93 16 27 H 0.08 0.86 8.09 -2.39 -0.02 0.84 16 28 H 0.07 0.97 8.08 -2.39 -0.02 0.95 16 29 H 0.15 1.51 8.06 -2.91 -0.02 1.49 16 30 H 0.15 1.62 8.06 -2.91 -0.02 1.59 16 31 H 0.14 2.33 8.06 -2.91 -0.02 2.31 16 32 H 0.17 2.48 8.08 -2.39 -0.02 2.46 16 33 H 0.16 2.80 7.38 -2.39 -0.02 2.78 16 34 H 0.42 10.39 8.80 -96.74 -0.85 9.54 16 35 H 0.06 2.15 7.33 -2.39 -0.02 2.14 16 36 H 0.05 2.00 8.14 -2.39 -0.02 1.98 16 37 H 0.02 1.03 5.17 -2.39 -0.01 1.02 16 38 H 0.03 1.24 8.14 -2.39 -0.02 1.22 16 39 H 0.26 14.46 8.31 -92.71 -0.77 13.69 16 40 H 0.03 1.61 7.07 -2.39 -0.02 1.59 16 41 H 0.01 0.51 8.14 -2.38 -0.02 0.49 16 42 H 0.05 1.84 8.14 -2.39 -0.02 1.82 16 43 H 0.07 2.11 8.14 -2.39 -0.02 2.09 16 44 H 0.13 2.80 8.06 -2.91 -0.02 2.78 16 Total: -1.00 -69.79 365.11 -0.47 -70.26 By element: Atomic # 1 Polarization: 18.32 SS G_CDS: 0.15 Total: 18.47 kcal Atomic # 6 Polarization: -54.11 SS G_CDS: 2.96 Total: -51.15 kcal Atomic # 7 Polarization: -84.07 SS G_CDS: -0.63 Total: -84.70 kcal Atomic # 8 Polarization: -66.23 SS G_CDS: -4.48 Total: -70.71 kcal Atomic # 14 Polarization: 43.42 SS G_CDS: 1.84 Total: 45.26 kcal Atomic # 16 Polarization: 72.88 SS G_CDS: -0.30 Total: 72.58 kcal Total: -69.79 -0.47 -70.26 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001259751052.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -24.686 kcal (2) G-P(sol) polarization free energy of solvation -69.793 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -94.479 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.468 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.261 kcal (6) G-S(sol) free energy of system = (1) + (5) -94.947 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds