Wall clock time and date at job start Tue Mar 31 2020 14:14:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.38251 * 120.00277 * 2 1 4 4 C 1.38213 * 120.00448 * 180.30002 * 3 2 1 5 5 C 1.38261 * 119.99427 * 359.46407 * 4 3 2 6 6 C 1.38209 * 120.00015 * 0.26117 * 5 4 3 7 7 C 1.50699 * 119.99873 * 179.97438 * 6 5 4 8 8 S 1.81399 * 109.47145 * 90.00172 * 7 6 5 9 9 O 1.42105 * 110.53963 * 291.62126 * 8 7 6 10 10 O 1.42091 * 110.54700 * 68.37381 * 8 7 6 11 11 N 1.65598 * 104.44829 * 180.02562 * 8 7 6 12 12 C 1.46500 * 120.00426 * 65.38053 * 11 8 7 13 13 C 1.50696 * 110.01967 * 54.34076 * 12 11 8 14 14 H 1.07995 * 120.00353 * 243.00762 * 13 12 11 15 15 C 1.37881 * 119.99533 * 63.00807 * 13 12 11 16 16 N 1.31510 * 120.00187 * 353.38517 * 15 13 12 17 17 Si 1.86800 * 119.99658 * 173.38670 * 15 13 12 18 18 H 1.48494 * 109.47218 * 0.02562 * 17 15 13 19 19 H 1.48503 * 109.47017 * 119.99808 * 17 15 13 20 20 H 1.48495 * 109.47146 * 239.99791 * 17 15 13 21 21 C 1.54275 * 110.02649 * 292.89959 * 12 11 8 22 22 C 1.54886 * 104.19352 * 217.10393 * 21 12 11 23 23 C 1.54888 * 102.75160 * 37.94783 * 22 21 12 24 24 C 1.53872 * 110.03338 * 175.74109 * 12 11 8 25 25 C 1.38212 * 119.99956 * 179.76766 * 2 1 3 26 26 H 1.09008 * 109.46738 * 270.23277 * 1 2 3 27 27 H 1.09001 * 109.46867 * 30.22932 * 1 2 3 28 28 H 1.09000 * 109.47299 * 150.23459 * 1 2 3 29 29 H 1.08004 * 120.00107 * 0.04674 * 3 2 1 30 30 H 1.07991 * 120.00732 * 179.74414 * 4 3 2 31 31 H 1.07996 * 119.99845 * 180.27480 * 5 4 3 32 32 H 1.09005 * 109.47133 * 209.99818 * 7 6 5 33 33 H 1.08997 * 109.47236 * 329.99428 * 7 6 5 34 34 H 0.97006 * 119.99697 * 245.37660 * 11 8 7 35 35 H 0.96999 * 120.00179 * 185.00728 * 16 15 13 36 36 H 1.08996 * 110.48761 * 335.78518 * 21 12 11 37 37 H 1.09002 * 110.48212 * 98.42936 * 21 12 11 38 38 H 1.09004 * 110.75707 * 279.62934 * 22 21 12 39 39 H 1.08999 * 110.91400 * 156.33692 * 22 21 12 40 40 H 1.08999 * 110.49028 * 203.37884 * 23 22 21 41 41 H 1.08998 * 110.48497 * 80.73014 * 23 22 21 42 42 H 1.09004 * 110.02856 * 238.56550 * 24 12 11 43 43 H 1.09001 * 110.03369 * 359.97438 * 24 12 11 44 44 H 1.08004 * 119.99900 * 0.02562 * 25 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1983 1.1973 0.0000 4 6 3.5805 1.1973 -0.0063 5 6 4.2717 -0.0001 -0.0013 6 6 3.5806 -1.1970 0.0044 7 6 4.3341 -2.5021 0.0092 8 16 4.6380 -3.0185 1.7213 9 8 5.5620 -2.1409 2.3503 10 8 3.4194 -3.3778 2.3577 11 7 5.4633 -4.4474 1.5816 12 6 6.8034 -4.4645 0.9899 13 6 7.6979 -3.4889 1.7103 14 1 8.1130 -2.6443 1.1806 15 6 7.9864 -3.6747 3.0457 16 7 7.3805 -4.6251 3.7233 17 14 9.2379 -2.5765 3.8924 18 1 9.7723 -1.5920 2.9176 19 1 8.5852 -1.8562 5.0151 20 1 10.3507 -3.4076 4.4179 21 6 6.7243 -4.1039 -0.5080 22 6 7.7912 -5.0084 -1.1733 23 6 7.6577 -6.3332 -0.3821 24 6 7.3968 -5.8820 1.0699 25 6 2.1981 -1.1969 0.0049 26 1 -0.3633 0.0042 1.0278 27 1 -0.3633 0.8879 -0.5174 28 1 -0.3634 -0.8921 -0.5102 29 1 1.6584 2.1326 0.0008 30 1 4.1205 2.1325 -0.0104 31 1 5.3517 -0.0001 -0.0017 32 1 3.7445 -3.2639 -0.5008 33 1 5.2860 -2.3740 -0.5062 34 1 5.0594 -5.2731 1.8916 35 1 7.5285 -4.7098 4.6782 36 1 5.7335 -4.3289 -0.9027 37 1 6.9670 -3.0522 -0.6604 38 1 8.7878 -4.5842 -1.0511 39 1 7.5660 -5.1642 -2.2283 40 1 8.5815 -6.9085 -0.4426 41 1 6.8176 -6.9182 -0.7565 42 1 8.3323 -5.8641 1.6291 43 1 6.6879 -6.5571 1.5493 44 1 1.6580 -2.1323 0.0082 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001259753571.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:14:34 Heat of formation + Delta-G solvation = -76.403409 kcal Electronic energy + Delta-G solvation = -26602.279320 eV Core-core repulsion = 23031.198746 eV Total energy + Delta-G solvation = -3571.080574 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 323.134 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -40.40308 -39.42622 -37.67782 -36.48076 -34.70702 -34.45904 -33.30734 -32.97650 -29.64449 -28.61683 -28.36674 -27.63568 -25.72571 -23.17461 -22.07274 -21.16311 -20.84899 -19.97070 -18.67672 -17.79606 -17.50597 -17.00373 -16.95864 -16.50895 -16.27600 -15.88579 -15.70571 -15.45432 -14.69967 -14.61175 -14.32282 -14.06357 -13.93116 -13.71467 -13.39738 -13.17071 -13.12158 -12.93360 -12.89771 -12.89284 -12.66936 -12.49823 -12.30129 -12.19311 -12.03523 -11.94911 -11.64767 -11.60537 -11.49760 -11.30301 -11.13929 -11.04477 -10.32881 -9.82987 -9.66949 -9.44205 -7.99055 -6.05332 -0.47961 0.38745 0.44872 1.37359 1.45213 1.50110 2.32641 2.53126 2.74925 3.16297 3.35338 3.50874 3.58896 3.92794 4.00675 4.11609 4.17971 4.20303 4.30100 4.32313 4.42906 4.51275 4.58656 4.76785 4.82989 4.84549 4.93541 4.94704 5.04871 5.10194 5.14073 5.17599 5.22855 5.28194 5.38024 5.44521 5.47468 5.53284 5.60396 5.60876 5.74354 5.88128 6.03965 6.09370 6.45555 6.76587 7.00238 7.63872 9.03812 Molecular weight = 323.13amu Principal moments of inertia in cm(-1) A = 0.015112 B = 0.004926 C = 0.004425 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1852.356516 B = 5683.271474 C = 6326.182729 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.114 4.114 2 C -0.094 4.094 3 C -0.120 4.120 4 C -0.119 4.119 5 C -0.135 4.135 6 C -0.099 4.099 7 C -0.581 4.581 8 S 2.602 3.398 9 O -0.968 6.968 10 O -1.026 7.026 11 N -1.081 6.081 12 C 0.285 3.715 13 C -0.510 4.510 14 H 0.054 0.946 15 C 0.054 3.946 16 N -0.892 5.892 17 Si 0.919 3.081 18 H -0.266 1.266 19 H -0.301 1.301 20 H -0.279 1.279 21 C -0.151 4.151 22 C -0.107 4.107 23 C -0.120 4.120 24 C -0.086 4.086 25 C -0.131 4.131 26 H 0.075 0.925 27 H 0.088 0.912 28 H 0.074 0.926 29 H 0.156 0.844 30 H 0.150 0.850 31 H 0.127 0.873 32 H 0.157 0.843 33 H 0.157 0.843 34 H 0.397 0.603 35 H 0.252 0.748 36 H 0.079 0.921 37 H 0.062 0.938 38 H 0.059 0.941 39 H 0.084 0.916 40 H 0.063 0.937 41 H 0.072 0.928 42 H 0.040 0.960 43 H 0.039 0.961 44 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.132 5.063 -13.245 16.866 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C -0.094 4.094 3 C -0.138 4.138 4 C -0.137 4.137 5 C -0.154 4.154 6 C -0.101 4.101 7 C -0.709 4.709 8 S 2.699 3.301 9 O -0.958 6.958 10 O -1.016 7.016 11 N -0.838 5.838 12 C 0.199 3.801 13 C -0.551 4.551 14 H 0.072 0.928 15 C -0.148 4.148 16 N -0.531 5.531 17 Si 0.747 3.253 18 H -0.190 1.190 19 H -0.229 1.229 20 H -0.205 1.205 21 C -0.189 4.189 22 C -0.145 4.145 23 C -0.158 4.158 24 C -0.126 4.126 25 C -0.150 4.150 26 H 0.094 0.906 27 H 0.107 0.893 28 H 0.093 0.907 29 H 0.173 0.827 30 H 0.168 0.832 31 H 0.145 0.855 32 H 0.175 0.825 33 H 0.175 0.825 34 H 0.229 0.771 35 H 0.061 0.939 36 H 0.097 0.903 37 H 0.081 0.919 38 H 0.078 0.922 39 H 0.103 0.897 40 H 0.082 0.918 41 H 0.091 0.909 42 H 0.059 0.941 43 H 0.058 0.942 44 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges -9.243 5.505 -12.326 16.361 hybrid contribution 0.855 -0.046 0.860 1.214 sum -8.388 5.459 -11.466 15.219 Atomic orbital electron populations 1.20878 0.88708 1.04216 1.03211 1.20328 0.98002 0.92547 0.98556 1.21501 0.94139 0.98647 0.99522 1.21495 0.95039 0.98167 0.98965 1.21417 1.00894 0.92642 1.00448 1.19219 0.94183 0.92841 1.03809 1.29919 1.10815 1.04335 1.25817 1.05088 0.72300 0.74820 0.77880 1.93570 1.61349 1.68172 1.72684 1.93414 1.49509 1.83764 1.74947 1.55695 1.26912 1.23480 1.77709 1.18608 0.78722 0.94462 0.88267 1.21571 1.28248 1.09785 0.95475 0.92798 1.25260 0.96383 0.94868 0.98331 1.70033 1.43070 1.32967 1.07059 0.86127 0.80126 0.80093 0.78925 1.19010 1.22865 1.20539 1.23260 1.00026 0.99797 0.95864 1.22309 0.98517 0.94860 0.98824 1.22394 1.01253 0.97351 0.94795 1.22046 0.99621 0.95338 0.95628 1.21304 0.93028 0.99579 1.01136 0.90617 0.89311 0.90699 0.82669 0.83183 0.85471 0.82459 0.82503 0.77052 0.93873 0.90276 0.91931 0.92217 0.89741 0.91783 0.90939 0.94111 0.94186 0.84909 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 21. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.88 10.01 71.24 0.71 -1.17 16 2 C -0.09 -2.25 5.88 -19.87 -0.12 -2.37 16 3 C -0.12 -2.63 9.70 22.27 0.22 -2.41 16 4 C -0.12 -2.93 10.05 22.27 0.22 -2.71 16 5 C -0.13 -4.10 9.70 22.27 0.22 -3.88 16 6 C -0.10 -3.14 5.14 -19.87 -0.10 -3.24 16 7 C -0.58 -18.49 4.67 71.24 0.33 -18.15 16 8 S 2.60 114.11 5.40 -56.49 -0.31 113.80 16 9 O -0.97 -51.10 15.17 -127.65 -1.94 -53.04 16 10 O -1.03 -49.56 18.08 -127.65 -2.31 -51.87 16 11 N -1.08 -46.82 4.81 -152.30 -0.73 -47.55 16 12 C 0.28 12.22 0.61 3.58 0.00 12.22 16 13 C -0.51 -26.23 5.70 25.60 0.15 -26.09 16 14 H 0.05 2.80 7.51 -2.91 -0.02 2.78 16 15 C 0.05 2.98 4.35 84.66 0.37 3.35 16 16 N -0.89 -50.68 11.90 21.45 0.26 -50.42 16 17 Si 0.92 45.87 29.55 68.60 2.03 47.90 16 18 H -0.27 -12.81 7.11 99.48 0.71 -12.10 16 19 H -0.30 -15.79 7.11 99.48 0.71 -15.08 16 20 H -0.28 -13.36 7.11 99.48 0.71 -12.65 16 21 C -0.15 -5.02 4.03 31.67 0.13 -4.89 16 22 C -0.11 -3.12 6.91 31.88 0.22 -2.90 16 23 C -0.12 -3.69 6.83 31.67 0.22 -3.47 16 24 C -0.09 -3.54 5.36 31.32 0.17 -3.37 16 25 C -0.13 -3.77 9.36 22.27 0.21 -3.56 16 26 H 0.08 1.22 8.14 -2.38 -0.02 1.20 16 27 H 0.09 1.06 8.09 -2.39 -0.02 1.04 16 28 H 0.07 1.12 8.09 -2.39 -0.02 1.10 16 29 H 0.16 2.30 8.06 -2.91 -0.02 2.27 16 30 H 0.15 2.82 8.06 -2.91 -0.02 2.79 16 31 H 0.13 3.83 8.06 -2.91 -0.02 3.81 16 32 H 0.16 3.99 8.01 -2.39 -0.02 3.97 16 33 H 0.16 4.66 5.13 -2.39 -0.01 4.65 16 34 H 0.40 16.79 8.17 -96.74 -0.79 16.00 16 35 H 0.25 14.18 8.32 -92.71 -0.77 13.41 16 36 H 0.08 2.21 6.78 -2.39 -0.02 2.19 16 37 H 0.06 2.09 6.48 -2.39 -0.02 2.07 16 38 H 0.06 1.83 8.14 -2.39 -0.02 1.81 16 39 H 0.08 1.91 8.14 -2.39 -0.02 1.89 16 40 H 0.06 1.82 8.14 -2.39 -0.02 1.80 16 41 H 0.07 1.93 8.14 -2.39 -0.02 1.91 16 42 H 0.04 1.92 7.11 -2.38 -0.02 1.90 16 43 H 0.04 1.67 7.45 -2.39 -0.02 1.65 16 44 H 0.13 3.48 8.06 -2.91 -0.02 3.45 16 Total: -1.00 -72.10 358.60 0.15 -71.95 By element: Atomic # 1 Polarization: 31.67 SS G_CDS: 0.21 Total: 31.88 kcal Atomic # 6 Polarization: -65.59 SS G_CDS: 2.94 Total: -62.65 kcal Atomic # 7 Polarization: -97.50 SS G_CDS: -0.48 Total: -97.97 kcal Atomic # 8 Polarization: -100.66 SS G_CDS: -4.24 Total: -104.90 kcal Atomic # 14 Polarization: 45.87 SS G_CDS: 2.03 Total: 47.90 kcal Atomic # 16 Polarization: 114.11 SS G_CDS: -0.31 Total: 113.80 kcal Total: -72.10 0.15 -71.95 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001259753571.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.452 kcal (2) G-P(sol) polarization free energy of solvation -72.100 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -76.553 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.149 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.951 kcal (6) G-S(sol) free energy of system = (1) + (5) -76.403 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds