Wall clock time and date at job start Tue Mar 31 2020 14:16:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.38251 * 119.99943 * 2 1 4 4 C 1.38212 * 120.00178 * 180.02562 * 3 2 1 5 5 C 1.38255 * 119.99805 * 359.97408 * 4 3 2 6 6 C 1.38216 * 120.00174 * 359.82110 * 5 4 3 7 7 C 1.38207 * 120.00040 * 180.02562 * 2 1 3 8 8 C 1.50705 * 119.99910 * 359.97438 * 7 2 1 9 9 S 1.81406 * 109.46847 * 90.00442 * 8 7 2 10 10 O 1.42091 * 110.54454 * 68.37390 * 9 8 7 11 11 O 1.42100 * 110.53944 * 291.62164 * 9 8 7 12 12 N 1.65601 * 104.44440 * 179.97438 * 9 8 7 13 13 C 1.46499 * 120.00223 * 65.00230 * 12 9 8 14 14 H 1.08997 * 109.40995 * 334.85378 * 13 12 9 15 15 C 1.52959 * 109.41821 * 94.64206 * 13 12 9 16 16 C 1.53652 * 109.32660 * 183.83330 * 15 13 12 17 17 C 1.51269 * 108.31082 * 305.14051 * 16 15 13 18 18 C 1.37885 * 120.84892 * 231.38027 * 17 16 15 19 19 N 1.31516 * 119.99913 * 180.27944 * 18 17 16 20 20 Si 1.86798 * 119.99766 * 0.28022 * 18 17 16 21 21 H 1.48500 * 109.47353 * 269.99586 * 20 18 17 22 22 H 1.48501 * 109.47293 * 30.00037 * 20 18 17 23 23 H 1.48504 * 109.46680 * 149.99835 * 20 18 17 24 24 C 1.51267 * 118.30147 * 51.65779 * 17 16 15 25 25 C 1.52964 * 109.41240 * 214.99555 * 13 12 9 26 26 H 1.09007 * 109.46891 * 269.97154 * 1 2 3 27 27 H 1.08994 * 109.47401 * 29.97109 * 1 2 3 28 28 H 1.09000 * 109.46984 * 149.97655 * 1 2 3 29 29 H 1.08006 * 120.00247 * 359.97438 * 3 2 1 30 30 H 1.08004 * 120.00282 * 179.97438 * 4 3 2 31 31 H 1.08001 * 120.00004 * 179.97438 * 5 4 3 32 32 H 1.07993 * 120.00134 * 180.22897 * 6 5 4 33 33 H 1.08989 * 109.47351 * 329.99989 * 8 7 2 34 34 H 1.08999 * 109.47106 * 209.99810 * 8 7 2 35 35 H 0.97001 * 119.99634 * 244.99476 * 12 9 8 36 36 H 1.09001 * 109.47998 * 303.68926 * 15 13 12 37 37 H 1.09003 * 109.47830 * 63.71358 * 15 13 12 38 38 H 1.09007 * 109.69461 * 185.52287 * 16 15 13 39 39 H 1.09007 * 109.78671 * 64.80813 * 16 15 13 40 40 H 0.97001 * 119.99646 * 179.97438 * 19 18 17 41 41 H 1.09001 * 109.63015 * 68.11448 * 24 17 16 42 42 H 1.09007 * 109.62669 * 188.68873 * 24 17 16 43 43 H 1.09002 * 109.47682 * 56.31342 * 25 13 12 44 44 H 1.08996 * 109.49475 * 296.28284 * 25 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1983 1.1973 0.0000 4 6 3.5804 1.1973 -0.0005 5 6 4.2717 0.0000 -0.0005 6 6 3.5806 -1.1970 0.0037 7 6 2.1981 -1.1969 -0.0005 8 6 1.4445 -2.5020 -0.0005 9 16 1.1417 -3.0253 -1.7109 10 8 2.3607 -3.3872 -2.3449 11 8 0.2182 -2.1502 -2.3439 12 7 0.3175 -4.4543 -1.5659 13 6 -1.0194 -4.4714 -0.9670 14 1 -1.1281 -3.6169 -0.2992 15 6 -2.0730 -4.3878 -2.0728 16 6 -3.4704 -4.3091 -1.4388 17 6 -3.6371 -5.4896 -0.5077 18 6 -4.7403 -6.3117 -0.5989 19 7 -4.8710 -7.3302 0.2228 20 14 -6.0491 -5.9787 -1.8894 21 1 -7.0810 -5.0718 -1.3254 22 1 -5.4238 -5.3402 -3.0754 23 1 -6.6831 -7.2594 -2.2933 24 6 -2.5657 -5.7414 0.5300 25 6 -1.2038 -5.7650 -0.1718 26 1 -0.3633 -0.0005 1.0277 27 1 -0.3634 0.8902 -0.5133 28 1 -0.3633 -0.8898 -0.5142 29 1 1.6583 2.1327 -0.0004 30 1 4.1204 2.1327 -0.0010 31 1 5.3517 0.0000 -0.0014 32 1 4.1206 -2.1322 0.0075 33 1 0.4924 -2.3719 0.5136 34 1 2.0338 -3.2618 0.5129 35 1 0.7200 -5.2801 -1.8775 36 1 -1.8976 -3.4966 -2.6753 37 1 -2.0071 -5.2731 -2.7053 38 1 -4.2306 -4.3480 -2.2191 39 1 -3.5679 -3.3814 -0.8747 40 1 -5.6473 -7.9083 0.1589 41 1 -2.5809 -4.9440 1.2730 42 1 -2.7442 -6.7011 1.0152 43 1 -0.4124 -5.8498 0.5729 44 1 -1.1585 -6.6179 -0.8490 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001260023998.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:16:38 Heat of formation + Delta-G solvation = -70.055567 kcal Electronic energy + Delta-G solvation = -25857.949814 eV Core-core repulsion = 22287.144503 eV Total energy + Delta-G solvation = -3570.805311 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 323.134 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -39.75997 -37.62048 -36.86310 -35.78414 -33.74391 -33.68623 -32.40648 -31.28008 -29.66207 -28.03624 -26.89834 -26.69915 -22.41318 -22.13010 -21.54385 -21.19635 -19.67200 -19.08764 -17.57256 -16.83928 -16.43777 -16.12579 -15.89479 -15.59117 -15.13704 -14.60732 -14.46528 -13.83722 -13.51588 -13.32492 -13.24169 -12.94854 -12.89791 -12.54891 -12.43403 -12.40820 -12.26278 -12.24976 -11.93159 -11.83753 -11.39908 -11.27714 -11.20394 -11.19269 -10.99224 -10.90953 -10.63384 -10.24522 -10.05003 -9.70499 -9.26319 -9.02666 -8.95579 -8.74375 -8.54435 -8.43600 -6.14151 -4.05135 0.22475 1.14887 1.17465 2.91444 3.26341 3.35049 3.36545 3.49340 3.82614 4.17004 4.28548 4.36072 4.62829 4.72205 4.79318 4.94063 5.11938 5.13487 5.26327 5.28288 5.34576 5.53074 5.57134 5.67643 5.78927 5.81163 5.92859 6.01416 6.10043 6.19601 6.26119 6.37203 6.47484 6.57632 6.69750 6.74850 6.85917 6.93239 7.01591 7.12989 7.30942 7.40030 7.61834 7.66297 7.77210 8.32976 8.92258 9.50793 10.95189 Molecular weight = 323.13amu Principal moments of inertia in cm(-1) A = 0.023345 B = 0.003388 C = 0.003281 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1199.109499 B = 8261.554667 C = 8530.849548 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.065 4.065 3 C -0.121 4.121 4 C -0.110 4.110 5 C -0.127 4.127 6 C -0.102 4.102 7 C -0.091 4.091 8 C -0.593 4.593 9 S 2.605 3.395 10 O -0.966 6.966 11 O -0.944 6.944 12 N -1.115 6.115 13 C 0.162 3.838 14 H 0.069 0.931 15 C -0.124 4.124 16 C -0.021 4.021 17 C -0.490 4.490 18 C 0.076 3.924 19 N -0.890 5.890 20 Si 0.886 3.114 21 H -0.278 1.278 22 H -0.263 1.263 23 H -0.290 1.290 24 C 0.010 3.990 25 C -0.114 4.114 26 H 0.077 0.923 27 H 0.075 0.925 28 H 0.080 0.920 29 H 0.128 0.872 30 H 0.125 0.875 31 H 0.126 0.874 32 H 0.130 0.870 33 H 0.144 0.856 34 H 0.142 0.858 35 H 0.414 0.586 36 H 0.050 0.950 37 H 0.056 0.944 38 H 0.037 0.963 39 H 0.019 0.981 40 H 0.264 0.736 41 H 0.005 0.995 42 H 0.061 0.939 43 H 0.036 0.964 44 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.875 12.442 1.330 19.438 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C -0.066 4.066 3 C -0.139 4.139 4 C -0.129 4.129 5 C -0.145 4.145 6 C -0.121 4.121 7 C -0.093 4.093 8 C -0.719 4.719 9 S 2.697 3.303 10 O -0.956 6.956 11 O -0.934 6.934 12 N -0.874 5.874 13 C 0.057 3.943 14 H 0.087 0.913 15 C -0.163 4.163 16 C -0.059 4.059 17 C -0.509 4.509 18 C -0.127 4.127 19 N -0.528 5.528 20 Si 0.715 3.285 21 H -0.204 1.204 22 H -0.188 1.188 23 H -0.217 1.217 24 C -0.028 4.028 25 C -0.154 4.154 26 H 0.095 0.905 27 H 0.094 0.906 28 H 0.098 0.902 29 H 0.146 0.854 30 H 0.143 0.857 31 H 0.144 0.856 32 H 0.147 0.853 33 H 0.162 0.838 34 H 0.160 0.840 35 H 0.248 0.752 36 H 0.069 0.931 37 H 0.075 0.925 38 H 0.056 0.944 39 H 0.038 0.962 40 H 0.074 0.926 41 H 0.024 0.976 42 H 0.079 0.921 43 H 0.055 0.945 44 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges 14.902 12.850 0.641 19.688 hybrid contribution -0.564 -0.485 0.023 0.745 sum 14.337 12.365 0.664 18.945 Atomic orbital electron populations 1.21066 0.90378 1.04685 1.02843 1.19932 0.96698 0.92372 0.97626 1.21072 0.94289 0.97468 1.01022 1.21232 0.94328 0.98212 0.99115 1.21129 1.00109 0.92216 1.01019 1.21162 0.93066 0.99063 0.98845 1.18864 0.93538 0.91879 1.04974 1.29730 1.10127 1.04212 1.27829 1.05216 0.73924 0.74249 0.76884 1.93559 1.46966 1.82359 1.72696 1.93598 1.62472 1.66253 1.71076 1.55828 1.28174 1.25573 1.77812 1.20873 0.79139 0.99811 0.94516 0.91306 1.22138 0.96721 1.00538 0.96932 1.19902 0.92680 0.97182 0.96151 1.20065 1.05137 1.10066 1.15618 1.24850 0.97463 0.94524 0.95814 1.69831 1.29318 1.16246 1.37390 0.86687 0.81682 0.77456 0.82721 1.20386 1.18795 1.21692 1.19382 0.89740 0.98839 0.94798 1.21979 0.99883 0.95360 0.98140 0.90462 0.90611 0.90152 0.85449 0.85700 0.85555 0.85251 0.83783 0.84008 0.75205 0.93099 0.92497 0.94416 0.96235 0.92572 0.97645 0.92054 0.94515 0.92302 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.52 9.19 36.01 0.33 -1.19 16 2 C -0.07 -0.78 5.88 -104.63 -0.62 -1.40 16 3 C -0.12 -1.24 9.70 -39.59 -0.38 -1.62 16 4 C -0.11 -1.03 10.05 -39.58 -0.40 -1.43 16 5 C -0.13 -1.24 10.05 -39.58 -0.40 -1.63 16 6 C -0.10 -1.15 9.70 -39.58 -0.38 -1.54 16 7 C -0.09 -1.12 5.14 -104.62 -0.54 -1.66 16 8 C -0.59 -6.96 5.35 36.01 0.19 -6.77 16 9 S 2.61 38.65 5.34 -107.50 -0.57 38.08 16 10 O -0.97 -16.29 18.08 -57.54 -1.04 -17.33 16 11 O -0.94 -16.59 15.36 -57.54 -0.88 -17.47 16 12 N -1.11 -16.59 5.36 -4.93 -0.03 -16.61 16 13 C 0.16 2.84 2.45 -67.97 -0.17 2.68 16 14 H 0.07 1.12 7.14 -51.93 -0.37 0.75 16 15 C -0.12 -2.49 5.55 -26.41 -0.15 -2.64 16 16 C -0.02 -0.47 5.62 -27.27 -0.15 -0.63 16 17 C -0.49 -12.31 5.50 -98.92 -0.54 -12.85 16 18 C 0.08 2.02 5.46 -17.82 -0.10 1.92 16 19 N -0.89 -24.82 12.73 55.43 0.71 -24.11 16 20 Si 0.89 20.63 27.52 -169.99 -4.68 15.96 16 21 H -0.28 -6.43 7.11 56.52 0.40 -6.03 16 22 H -0.26 -5.95 6.11 56.52 0.35 -5.60 16 23 H -0.29 -6.80 7.11 56.52 0.40 -6.40 16 24 C 0.01 0.24 5.97 -27.49 -0.16 0.08 16 25 C -0.11 -2.16 5.46 -26.63 -0.15 -2.31 16 26 H 0.08 0.76 8.14 -51.93 -0.42 0.33 16 27 H 0.07 0.77 8.08 -51.93 -0.42 0.35 16 28 H 0.08 1.03 4.95 -51.93 -0.26 0.77 16 29 H 0.13 1.02 8.06 -52.48 -0.42 0.59 16 30 H 0.13 0.82 8.06 -52.48 -0.42 0.40 16 31 H 0.13 0.90 8.06 -52.49 -0.42 0.48 16 32 H 0.13 1.25 8.06 -52.49 -0.42 0.82 16 33 H 0.14 1.55 6.00 -51.93 -0.31 1.24 16 34 H 0.14 1.32 8.08 -51.92 -0.42 0.90 16 35 H 0.41 5.51 8.80 -34.47 -0.30 5.21 16 36 H 0.05 1.00 7.33 -51.93 -0.38 0.62 16 37 H 0.06 1.16 8.14 -51.93 -0.42 0.74 16 38 H 0.04 0.86 4.60 -51.92 -0.24 0.62 16 39 H 0.02 0.42 8.14 -51.93 -0.42 0.00 16 40 H 0.26 7.04 8.31 -40.82 -0.34 6.70 16 41 H 0.01 0.12 8.14 -51.93 -0.42 -0.31 16 42 H 0.06 1.57 7.07 -51.93 -0.37 1.20 16 43 H 0.04 0.60 8.14 -51.93 -0.42 0.18 16 44 H 0.06 1.16 8.14 -51.93 -0.42 0.73 16 LS Contribution 357.24 15.07 5.38 5.38 Total: -1.00 -31.59 357.24 -11.21 -42.80 By element: Atomic # 1 Polarization: 10.78 SS G_CDS: -6.49 Total: 4.29 kcal Atomic # 6 Polarization: -27.37 SS G_CDS: -3.61 Total: -30.98 kcal Atomic # 7 Polarization: -41.40 SS G_CDS: 0.68 Total: -40.72 kcal Atomic # 8 Polarization: -32.88 SS G_CDS: -1.92 Total: -34.80 kcal Atomic # 14 Polarization: 20.63 SS G_CDS: -4.68 Total: 15.96 kcal Atomic # 16 Polarization: 38.65 SS G_CDS: -0.57 Total: 38.08 kcal Total LS contribution 5.38 Total: 5.38 kcal Total: -31.59 -11.21 -42.80 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001260023998.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -27.258 kcal (2) G-P(sol) polarization free energy of solvation -31.585 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.843 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.212 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.797 kcal (6) G-S(sol) free energy of system = (1) + (5) -70.056 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds