Wall clock time and date at job start Tue Mar 31 2020 14:16:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.38259 * 120.00080 * 2 1 4 4 C 1.38215 * 119.99996 * 179.97438 * 3 2 1 5 5 C 1.38263 * 120.00057 * 359.97438 * 4 3 2 6 6 C 1.38214 * 119.99534 * 359.81181 * 5 4 3 7 7 C 1.38217 * 120.00140 * 180.02562 * 2 1 3 8 8 C 1.50701 * 119.99681 * 359.97438 * 7 2 1 9 9 S 1.81404 * 109.47098 * 89.99976 * 8 7 2 10 10 O 1.42098 * 110.54122 * 291.62227 * 9 8 7 11 11 O 1.42102 * 110.54223 * 68.37292 * 9 8 7 12 12 N 1.65600 * 104.45074 * 179.97438 * 9 8 7 13 13 C 1.46503 * 120.00062 * 64.99734 * 12 9 8 14 14 H 1.09003 * 109.40975 * 334.86087 * 13 12 9 15 15 C 1.52955 * 109.41274 * 94.64957 * 13 12 9 16 16 C 1.53233 * 109.40537 * 183.70652 * 15 13 12 17 17 C 1.51268 * 108.53467 * 305.37442 * 16 15 13 18 18 C 1.37877 * 120.84668 * 231.37321 * 17 16 15 19 19 N 1.31517 * 119.99818 * 179.97438 * 18 17 16 20 20 Si 1.86799 * 120.00028 * 359.97087 * 18 17 16 21 21 H 1.48499 * 109.47199 * 90.00806 * 20 18 17 22 22 H 1.48507 * 109.47188 * 210.00202 * 20 18 17 23 23 H 1.48494 * 109.47135 * 330.00156 * 20 18 17 24 24 C 1.51265 * 118.30265 * 51.34633 * 17 16 15 25 25 C 1.52957 * 109.41463 * 215.00378 * 13 12 9 26 26 H 1.08996 * 109.47491 * 269.97960 * 1 2 3 27 27 H 1.09001 * 109.46816 * 29.98405 * 1 2 3 28 28 H 1.09003 * 109.47114 * 149.98114 * 1 2 3 29 29 H 1.08000 * 120.00236 * 359.97438 * 3 2 1 30 30 H 1.07994 * 119.99959 * 180.02562 * 4 3 2 31 31 H 1.07995 * 119.99829 * 180.02562 * 5 4 3 32 32 H 1.08003 * 119.99726 * 180.23036 * 6 5 4 33 33 H 1.09002 * 109.47060 * 209.99926 * 8 7 2 34 34 H 1.09001 * 109.47380 * 330.00013 * 8 7 2 35 35 H 0.96993 * 120.00181 * 245.00479 * 12 9 8 36 36 H 1.09009 * 109.48306 * 303.68259 * 15 13 12 37 37 H 1.08993 * 109.48388 * 63.72301 * 15 13 12 38 38 H 1.09000 * 109.62573 * 185.65765 * 16 15 13 39 39 H 1.09006 * 109.62656 * 65.08209 * 16 15 13 40 40 H 0.97008 * 119.99917 * 179.97438 * 19 18 17 41 41 H 1.09002 * 109.62386 * 188.94505 * 24 17 16 42 42 H 1.08994 * 109.62611 * 68.36771 * 24 17 16 43 43 H 1.09000 * 109.47959 * 296.27161 * 25 13 12 44 44 H 1.08997 * 109.48371 * 56.30081 * 25 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1983 1.1973 0.0000 4 6 3.5804 1.1973 0.0005 5 6 4.2717 -0.0001 0.0016 6 6 3.5806 -1.1970 0.0061 7 6 2.1981 -1.1970 -0.0005 8 6 1.4445 -2.5021 -0.0005 9 16 1.1415 -3.0253 -1.7108 10 8 0.2181 -2.1503 -2.3438 11 8 2.3606 -3.3872 -2.3450 12 7 0.3173 -4.4543 -1.5659 13 6 -1.0195 -4.4714 -0.9669 14 1 -1.1282 -3.6169 -0.2990 15 6 -2.0731 -4.3878 -2.0726 16 6 -3.4678 -4.3124 -1.4423 17 6 -3.6372 -5.4895 -0.5074 18 6 -4.7399 -6.3121 -0.5992 19 7 -4.8702 -7.3312 0.2218 20 14 -6.0488 -5.9790 -1.8896 21 1 -5.7103 -6.7087 -3.1379 22 1 -7.3677 -6.4420 -1.3880 23 1 -6.1092 -4.5218 -2.1688 24 6 -2.5658 -5.7413 0.5302 25 6 -1.2039 -5.7650 -0.1717 26 1 -0.3634 -0.0004 1.0276 27 1 -0.3633 0.8902 -0.5136 28 1 -0.3633 -0.8898 -0.5141 29 1 1.6583 2.1327 -0.0004 30 1 4.1204 2.1326 0.0010 31 1 5.3517 0.0000 0.0024 32 1 4.1206 -2.1323 0.0107 33 1 2.0338 -3.2619 0.5129 34 1 0.4923 -2.3719 0.5137 35 1 0.7197 -5.2800 -1.8775 36 1 -1.8979 -3.4965 -2.6752 37 1 -2.0074 -5.2731 -2.7051 38 1 -4.2258 -4.3539 -2.2245 39 1 -3.5664 -3.3827 -0.8818 40 1 -5.6462 -7.9098 0.1575 41 1 -2.7443 -6.7010 1.0152 42 1 -2.5810 -4.9440 1.2731 43 1 -1.1588 -6.6177 -0.8492 44 1 -0.4124 -5.8499 0.5728 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001260023999.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:16:41 Heat of formation + Delta-G solvation = -70.734432 kcal Electronic energy + Delta-G solvation = -25857.591234 eV Core-core repulsion = 22286.756486 eV Total energy + Delta-G solvation = -3570.834749 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 323.134 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -39.75939 -37.63505 -36.86532 -35.78504 -33.74776 -33.68728 -32.40689 -31.29211 -29.68516 -28.03690 -26.89998 -26.69939 -22.41310 -22.14131 -21.54386 -21.19722 -19.67094 -19.08855 -17.57404 -16.84040 -16.43844 -16.12657 -15.89689 -15.59404 -15.13798 -14.61034 -14.45210 -13.83800 -13.51640 -13.32962 -13.24322 -12.95540 -12.89164 -12.56525 -12.42850 -12.39501 -12.26289 -12.20582 -11.93130 -11.83834 -11.42166 -11.27785 -11.21555 -11.20457 -11.01690 -10.88098 -10.65816 -10.21767 -10.03130 -9.78912 -9.26977 -9.03454 -8.96653 -8.74482 -8.50859 -8.47490 -6.14603 -4.05392 0.22321 1.14816 1.17421 2.91152 3.26191 3.35029 3.37293 3.49281 3.82473 4.16869 4.28464 4.36100 4.62778 4.72180 4.79295 4.93973 5.12252 5.13469 5.26144 5.28074 5.34467 5.53035 5.57178 5.67572 5.77881 5.80960 5.92485 6.00903 6.10028 6.19587 6.26073 6.37151 6.46607 6.56845 6.69969 6.74810 6.85275 6.93125 7.01013 7.11054 7.30663 7.39889 7.61461 7.66300 7.76971 8.32694 8.92024 9.50705 10.94804 Molecular weight = 323.13amu Principal moments of inertia in cm(-1) A = 0.023347 B = 0.003388 C = 0.003281 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1198.984129 B = 8261.861052 C = 8530.657810 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.065 4.065 3 C -0.121 4.121 4 C -0.110 4.110 5 C -0.127 4.127 6 C -0.102 4.102 7 C -0.091 4.091 8 C -0.593 4.593 9 S 2.605 3.395 10 O -0.944 6.944 11 O -0.966 6.966 12 N -1.115 6.115 13 C 0.162 3.838 14 H 0.069 0.931 15 C -0.125 4.125 16 C -0.015 4.015 17 C -0.491 4.491 18 C 0.076 3.924 19 N -0.890 5.890 20 Si 0.888 3.112 21 H -0.278 1.278 22 H -0.290 1.290 23 H -0.266 1.266 24 C 0.011 3.989 25 C -0.114 4.114 26 H 0.077 0.923 27 H 0.075 0.925 28 H 0.080 0.920 29 H 0.128 0.872 30 H 0.125 0.875 31 H 0.126 0.874 32 H 0.130 0.870 33 H 0.142 0.858 34 H 0.144 0.856 35 H 0.414 0.586 36 H 0.051 0.949 37 H 0.056 0.944 38 H 0.033 0.967 39 H 0.019 0.981 40 H 0.264 0.736 41 H 0.061 0.939 42 H 0.005 0.995 43 H 0.058 0.942 44 H 0.036 0.964 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.902 12.438 1.375 19.459 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C -0.066 4.066 3 C -0.139 4.139 4 C -0.129 4.129 5 C -0.145 4.145 6 C -0.121 4.121 7 C -0.093 4.093 8 C -0.719 4.719 9 S 2.697 3.303 10 O -0.934 6.934 11 O -0.956 6.956 12 N -0.874 5.874 13 C 0.057 3.943 14 H 0.087 0.913 15 C -0.165 4.165 16 C -0.054 4.054 17 C -0.510 4.510 18 C -0.126 4.126 19 N -0.527 5.527 20 Si 0.716 3.284 21 H -0.204 1.204 22 H -0.217 1.217 23 H -0.191 1.191 24 C -0.027 4.027 25 C -0.154 4.154 26 H 0.095 0.905 27 H 0.094 0.906 28 H 0.098 0.902 29 H 0.146 0.854 30 H 0.143 0.857 31 H 0.144 0.856 32 H 0.147 0.853 33 H 0.160 0.840 34 H 0.162 0.838 35 H 0.248 0.752 36 H 0.070 0.930 37 H 0.075 0.925 38 H 0.051 0.949 39 H 0.038 0.962 40 H 0.074 0.926 41 H 0.080 0.920 42 H 0.024 0.976 43 H 0.077 0.923 44 H 0.055 0.945 Dipole moment (debyes) X Y Z Total from point charges 14.928 12.848 0.686 19.708 hybrid contribution -0.558 -0.499 -0.009 0.749 sum 14.370 12.349 0.677 18.960 Atomic orbital electron populations 1.21065 0.90378 1.04687 1.02845 1.19936 0.96696 0.92372 0.97621 1.21074 0.94288 0.97467 1.01023 1.21233 0.94327 0.98211 0.99112 1.21130 1.00107 0.92215 1.01021 1.21160 0.93066 0.99062 0.98842 1.18864 0.93539 0.91878 1.04979 1.29731 1.10130 1.04213 1.27823 1.05219 0.73929 0.74246 0.76885 1.93598 1.62473 1.66249 1.71078 1.93561 1.46959 1.82359 1.72692 1.55824 1.28168 1.25579 1.77809 1.20867 0.79136 0.99831 0.94491 0.91287 1.22090 0.96773 1.00585 0.97004 1.19750 0.92343 0.97281 0.95981 1.20051 1.05231 1.10111 1.15615 1.24843 0.97475 0.94504 0.95811 1.69832 1.29427 1.16153 1.37308 0.86665 0.80963 0.78927 0.81858 1.20387 1.21684 1.19065 1.19378 0.89718 0.98842 0.94801 1.21980 0.99900 0.95354 0.98151 0.90459 0.90611 0.90152 0.85449 0.85703 0.85554 0.85253 0.84005 0.83779 0.75201 0.93034 0.92482 0.94871 0.96239 0.92561 0.92047 0.97636 0.92300 0.94493 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.52 9.19 36.00 0.33 -1.19 16 2 C -0.07 -0.78 5.88 -104.62 -0.62 -1.40 16 3 C -0.12 -1.24 9.70 -39.58 -0.38 -1.62 16 4 C -0.11 -1.03 10.05 -39.58 -0.40 -1.42 16 5 C -0.13 -1.23 10.05 -39.58 -0.40 -1.63 16 6 C -0.10 -1.15 9.70 -39.59 -0.38 -1.54 16 7 C -0.09 -1.12 5.14 -104.62 -0.54 -1.66 16 8 C -0.59 -6.95 5.35 36.01 0.19 -6.75 16 9 S 2.61 38.57 5.34 -107.50 -0.57 38.00 16 10 O -0.94 -16.56 15.36 -57.54 -0.88 -17.44 16 11 O -0.97 -16.26 18.08 -57.54 -1.04 -17.30 16 12 N -1.11 -16.54 5.36 -4.93 -0.03 -16.57 16 13 C 0.16 2.84 2.45 -67.97 -0.17 2.67 16 14 H 0.07 1.12 7.14 -51.93 -0.37 0.75 16 15 C -0.12 -2.50 5.53 -26.63 -0.15 -2.65 16 16 C -0.02 -0.34 5.59 -27.48 -0.15 -0.50 16 17 C -0.49 -12.35 5.51 -98.93 -0.55 -12.89 16 18 C 0.08 2.03 5.46 -17.82 -0.10 1.93 16 19 N -0.89 -24.80 12.73 55.43 0.71 -24.09 16 20 Si 0.89 20.73 27.27 -169.99 -4.64 16.09 16 21 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 22 H -0.29 -6.80 7.11 56.52 0.40 -6.40 16 23 H -0.27 -6.04 6.46 56.52 0.37 -5.67 16 24 C 0.01 0.25 5.97 -27.49 -0.16 0.08 16 25 C -0.11 -2.16 5.46 -26.63 -0.15 -2.31 16 26 H 0.08 0.76 8.14 -51.93 -0.42 0.33 16 27 H 0.07 0.77 8.09 -51.93 -0.42 0.35 16 28 H 0.08 1.03 4.95 -51.93 -0.26 0.77 16 29 H 0.13 1.02 8.06 -52.49 -0.42 0.59 16 30 H 0.12 0.82 8.06 -52.49 -0.42 0.40 16 31 H 0.13 0.90 8.06 -52.49 -0.42 0.48 16 32 H 0.13 1.24 8.06 -52.48 -0.42 0.82 16 33 H 0.14 1.32 8.08 -51.92 -0.42 0.90 16 34 H 0.14 1.55 6.00 -51.92 -0.31 1.24 16 35 H 0.41 5.50 8.80 -34.47 -0.30 5.20 16 36 H 0.05 1.00 7.34 -51.92 -0.38 0.62 16 37 H 0.06 1.16 8.14 -51.93 -0.42 0.73 16 38 H 0.03 0.75 4.78 -51.93 -0.25 0.50 16 39 H 0.02 0.42 8.14 -51.93 -0.42 0.00 16 40 H 0.26 7.03 8.31 -40.82 -0.34 6.70 16 41 H 0.06 1.57 7.07 -51.93 -0.37 1.20 16 42 H 0.01 0.12 8.14 -51.93 -0.42 -0.30 16 43 H 0.06 1.16 8.14 -51.93 -0.42 0.73 16 44 H 0.04 0.60 8.14 -51.93 -0.42 0.18 16 LS Contribution 357.49 15.07 5.39 5.39 Total: -1.00 -31.59 357.49 -11.16 -42.75 By element: Atomic # 1 Polarization: 10.54 SS G_CDS: -6.48 Total: 4.06 kcal Atomic # 6 Polarization: -27.27 SS G_CDS: -3.61 Total: -30.88 kcal Atomic # 7 Polarization: -41.34 SS G_CDS: 0.68 Total: -40.66 kcal Atomic # 8 Polarization: -32.82 SS G_CDS: -1.92 Total: -34.75 kcal Atomic # 14 Polarization: 20.73 SS G_CDS: -4.64 Total: 16.09 kcal Atomic # 16 Polarization: 38.57 SS G_CDS: -0.57 Total: 38.00 kcal Total LS contribution 5.39 Total: 5.39 kcal Total: -31.59 -11.16 -42.75 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001260023999.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -27.989 kcal (2) G-P(sol) polarization free energy of solvation -31.588 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.577 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.157 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.745 kcal (6) G-S(sol) free energy of system = (1) + (5) -70.734 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds