Wall clock time and date at job start Tue Mar 31 2020 14:16:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.38259 * 120.00080 * 2 1 4 4 C 1.38215 * 119.99996 * 179.97438 * 3 2 1 5 5 C 1.38263 * 120.00057 * 359.97438 * 4 3 2 6 6 C 1.38214 * 119.99534 * 359.81181 * 5 4 3 7 7 C 1.38217 * 120.00140 * 180.02562 * 2 1 3 8 8 C 1.50701 * 119.99681 * 359.97438 * 7 2 1 9 9 S 1.81404 * 109.47098 * 89.99976 * 8 7 2 10 10 O 1.42098 * 110.54122 * 291.62227 * 9 8 7 11 11 O 1.42102 * 110.54223 * 68.37292 * 9 8 7 12 12 N 1.65600 * 104.45074 * 179.97438 * 9 8 7 13 13 C 1.46503 * 120.00062 * 64.99734 * 12 9 8 14 14 H 1.09003 * 109.40975 * 334.86087 * 13 12 9 15 15 C 1.52955 * 109.41274 * 94.64957 * 13 12 9 16 16 C 1.53233 * 109.40537 * 183.70652 * 15 13 12 17 17 C 1.51268 * 108.53467 * 305.37442 * 16 15 13 18 18 C 1.37877 * 120.84668 * 231.37321 * 17 16 15 19 19 N 1.31517 * 119.99818 * 179.97438 * 18 17 16 20 20 Si 1.86799 * 120.00028 * 359.97087 * 18 17 16 21 21 H 1.48499 * 109.47199 * 90.00806 * 20 18 17 22 22 H 1.48507 * 109.47188 * 210.00202 * 20 18 17 23 23 H 1.48494 * 109.47135 * 330.00156 * 20 18 17 24 24 C 1.51265 * 118.30265 * 51.34633 * 17 16 15 25 25 C 1.52957 * 109.41463 * 215.00378 * 13 12 9 26 26 H 1.08996 * 109.47491 * 269.97960 * 1 2 3 27 27 H 1.09001 * 109.46816 * 29.98405 * 1 2 3 28 28 H 1.09003 * 109.47114 * 149.98114 * 1 2 3 29 29 H 1.08000 * 120.00236 * 359.97438 * 3 2 1 30 30 H 1.07994 * 119.99959 * 180.02562 * 4 3 2 31 31 H 1.07995 * 119.99829 * 180.02562 * 5 4 3 32 32 H 1.08003 * 119.99726 * 180.23036 * 6 5 4 33 33 H 1.09002 * 109.47060 * 209.99926 * 8 7 2 34 34 H 1.09001 * 109.47380 * 330.00013 * 8 7 2 35 35 H 0.96993 * 120.00181 * 245.00479 * 12 9 8 36 36 H 1.09009 * 109.48306 * 303.68259 * 15 13 12 37 37 H 1.08993 * 109.48388 * 63.72301 * 15 13 12 38 38 H 1.09000 * 109.62573 * 185.65765 * 16 15 13 39 39 H 1.09006 * 109.62656 * 65.08209 * 16 15 13 40 40 H 0.97008 * 119.99917 * 179.97438 * 19 18 17 41 41 H 1.09002 * 109.62386 * 188.94505 * 24 17 16 42 42 H 1.08994 * 109.62611 * 68.36771 * 24 17 16 43 43 H 1.09000 * 109.47959 * 296.27161 * 25 13 12 44 44 H 1.08997 * 109.48371 * 56.30081 * 25 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1983 1.1973 0.0000 4 6 3.5804 1.1973 0.0005 5 6 4.2717 -0.0001 0.0016 6 6 3.5806 -1.1970 0.0061 7 6 2.1981 -1.1970 -0.0005 8 6 1.4445 -2.5021 -0.0005 9 16 1.1415 -3.0253 -1.7108 10 8 0.2181 -2.1503 -2.3438 11 8 2.3606 -3.3872 -2.3450 12 7 0.3173 -4.4543 -1.5659 13 6 -1.0195 -4.4714 -0.9669 14 1 -1.1282 -3.6169 -0.2990 15 6 -2.0731 -4.3878 -2.0726 16 6 -3.4678 -4.3124 -1.4423 17 6 -3.6372 -5.4895 -0.5074 18 6 -4.7399 -6.3121 -0.5992 19 7 -4.8702 -7.3312 0.2218 20 14 -6.0488 -5.9790 -1.8896 21 1 -5.7103 -6.7087 -3.1379 22 1 -7.3677 -6.4420 -1.3880 23 1 -6.1092 -4.5218 -2.1688 24 6 -2.5658 -5.7413 0.5302 25 6 -1.2039 -5.7650 -0.1717 26 1 -0.3634 -0.0004 1.0276 27 1 -0.3633 0.8902 -0.5136 28 1 -0.3633 -0.8898 -0.5141 29 1 1.6583 2.1327 -0.0004 30 1 4.1204 2.1326 0.0010 31 1 5.3517 0.0000 0.0024 32 1 4.1206 -2.1323 0.0107 33 1 2.0338 -3.2619 0.5129 34 1 0.4923 -2.3719 0.5137 35 1 0.7197 -5.2800 -1.8775 36 1 -1.8979 -3.4965 -2.6752 37 1 -2.0074 -5.2731 -2.7051 38 1 -4.2258 -4.3539 -2.2245 39 1 -3.5664 -3.3827 -0.8818 40 1 -5.6462 -7.9098 0.1575 41 1 -2.7443 -6.7010 1.0152 42 1 -2.5810 -4.9440 1.2731 43 1 -1.1588 -6.6177 -0.8492 44 1 -0.4124 -5.8499 0.5728 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001260023999.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:16:40 Heat of formation + Delta-G solvation = -90.716121 kcal Electronic energy + Delta-G solvation = -25858.457705 eV Core-core repulsion = 22286.756486 eV Total energy + Delta-G solvation = -3571.701220 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 323.134 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -40.52183 -39.17112 -38.13332 -37.02440 -35.39959 -34.48997 -33.19935 -33.03392 -31.38859 -28.87423 -28.58766 -27.50501 -23.89169 -23.24063 -23.18337 -22.01677 -21.25293 -20.27984 -18.84639 -17.97856 -17.72663 -17.32626 -16.97819 -16.66198 -16.36547 -15.94058 -15.85499 -14.99510 -14.71463 -14.54083 -14.31085 -14.17623 -14.04318 -14.01256 -13.98123 -13.75488 -13.33879 -13.19203 -13.08185 -13.03370 -13.01022 -12.81244 -12.65554 -12.39474 -12.15563 -11.96017 -11.94810 -11.84852 -11.76825 -11.49011 -10.88907 -10.71815 -10.50927 -10.12925 -9.77845 -9.54920 -8.14566 -6.06924 -0.88169 0.36478 0.39703 1.38862 1.43742 1.51096 1.73887 2.43149 2.65509 2.81531 3.13604 3.16384 3.37282 3.73934 3.89905 3.95896 4.04940 4.21262 4.23480 4.38254 4.40970 4.50776 4.52091 4.59547 4.76483 4.77839 4.80332 4.89443 5.00863 5.04100 5.06735 5.14232 5.28516 5.29193 5.33289 5.44732 5.49503 5.53251 5.57798 5.63775 5.70725 5.82561 5.88930 6.01914 6.15726 6.39084 7.00311 7.50989 8.95829 Molecular weight = 323.13amu Principal moments of inertia in cm(-1) A = 0.023347 B = 0.003388 C = 0.003281 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1198.984129 B = 8261.861052 C = 8530.657810 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.084 4.084 3 C -0.131 4.131 4 C -0.109 4.109 5 C -0.133 4.133 6 C -0.118 4.118 7 C -0.117 4.117 8 C -0.573 4.573 9 S 2.607 3.393 10 O -0.978 6.978 11 O -0.989 6.989 12 N -1.110 6.110 13 C 0.170 3.830 14 H 0.086 0.914 15 C -0.125 4.125 16 C -0.019 4.019 17 C -0.496 4.496 18 C 0.024 3.976 19 N -0.929 5.929 20 Si 0.933 3.067 21 H -0.278 1.278 22 H -0.293 1.293 23 H -0.255 1.255 24 C 0.005 3.995 25 C -0.105 4.105 26 H 0.090 0.910 27 H 0.082 0.918 28 H 0.063 0.937 29 H 0.147 0.853 30 H 0.154 0.846 31 H 0.152 0.848 32 H 0.141 0.859 33 H 0.169 0.831 34 H 0.156 0.844 35 H 0.421 0.579 36 H 0.056 0.944 37 H 0.049 0.951 38 H 0.028 0.972 39 H 0.027 0.973 40 H 0.261 0.739 41 H 0.030 0.970 42 H 0.012 0.988 43 H 0.047 0.953 44 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.837 14.403 1.720 22.224 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.085 4.085 3 C -0.149 4.149 4 C -0.127 4.127 5 C -0.151 4.151 6 C -0.137 4.137 7 C -0.119 4.119 8 C -0.702 4.702 9 S 2.704 3.296 10 O -0.968 6.968 11 O -0.980 6.980 12 N -0.869 5.869 13 C 0.064 3.936 14 H 0.104 0.896 15 C -0.164 4.164 16 C -0.058 4.058 17 C -0.516 4.516 18 C -0.174 4.174 19 N -0.570 5.570 20 Si 0.760 3.240 21 H -0.204 1.204 22 H -0.220 1.220 23 H -0.179 1.179 24 C -0.033 4.033 25 C -0.144 4.144 26 H 0.108 0.892 27 H 0.101 0.899 28 H 0.082 0.918 29 H 0.164 0.836 30 H 0.172 0.828 31 H 0.170 0.830 32 H 0.159 0.841 33 H 0.187 0.813 34 H 0.173 0.827 35 H 0.256 0.744 36 H 0.075 0.925 37 H 0.068 0.932 38 H 0.046 0.954 39 H 0.046 0.954 40 H 0.071 0.929 41 H 0.049 0.951 42 H 0.030 0.970 43 H 0.066 0.934 44 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges 16.861 14.801 0.973 22.457 hybrid contribution -1.043 -0.984 -0.052 1.435 sum 15.817 13.818 0.921 21.023 Atomic orbital electron populations 1.21113 0.90497 1.04257 1.03555 1.20156 0.96976 0.93088 0.98314 1.21409 0.95072 0.97756 1.00619 1.21646 0.94173 0.99422 0.97475 1.21526 1.01571 0.91885 1.00069 1.21470 0.92945 1.00365 0.98918 1.19034 0.94229 0.91971 1.06660 1.29519 1.11426 1.05087 1.24210 1.05008 0.72973 0.73497 0.78122 1.93553 1.63232 1.66732 1.73238 1.93527 1.47416 1.82628 1.74397 1.55581 1.27212 1.26176 1.77900 1.20616 0.79627 0.99683 0.93711 0.89576 1.22041 0.96190 1.00488 0.97726 1.19786 0.93901 0.96490 0.95583 1.20676 1.05099 1.10127 1.15678 1.25517 0.99503 0.94862 0.97541 1.69952 1.30139 1.17547 1.39319 0.85930 0.78921 0.79253 0.79943 1.20365 1.22013 1.17932 1.19362 0.91824 0.97299 0.94809 1.21791 0.98347 0.95744 0.98560 0.89178 0.89900 0.91763 0.83551 0.82803 0.83033 0.84145 0.81287 0.82653 0.74388 0.92485 0.93249 0.95359 0.95410 0.92932 0.95142 0.97009 0.93404 0.91235 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 20. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.93 9.19 71.24 0.65 -2.27 16 2 C -0.08 -1.86 5.88 -19.87 -0.12 -1.97 16 3 C -0.13 -2.36 9.70 22.27 0.22 -2.15 16 4 C -0.11 -1.68 10.05 22.27 0.22 -1.46 16 5 C -0.13 -2.19 10.05 22.27 0.22 -1.97 16 6 C -0.12 -2.37 9.70 22.27 0.22 -2.15 16 7 C -0.12 -2.64 5.14 -19.87 -0.10 -2.74 16 8 C -0.57 -12.01 5.35 71.24 0.38 -11.63 16 9 S 2.61 73.28 5.34 -56.49 -0.30 72.98 16 10 O -0.98 -33.47 15.36 -127.65 -1.96 -35.43 16 11 O -0.99 -32.15 18.08 -127.65 -2.31 -34.46 16 12 N -1.11 -30.94 5.36 -169.50 -0.91 -31.85 16 13 C 0.17 5.64 2.45 44.96 0.11 5.75 16 14 H 0.09 2.59 7.14 -2.39 -0.02 2.57 16 15 C -0.12 -4.87 5.53 30.66 0.17 -4.70 16 16 C -0.02 -0.85 5.59 30.11 0.17 -0.69 16 17 C -0.50 -24.95 5.51 -16.17 -0.09 -25.04 16 18 C 0.02 1.28 5.46 84.65 0.46 1.75 16 19 N -0.93 -53.19 12.73 21.45 0.27 -52.92 16 20 Si 0.93 42.88 27.27 68.60 1.87 44.75 16 21 H -0.28 -12.63 7.11 99.48 0.71 -11.93 16 22 H -0.29 -13.51 7.11 99.48 0.71 -12.80 16 23 H -0.26 -11.14 6.46 99.48 0.64 -10.50 16 24 C 0.01 0.24 5.97 30.11 0.18 0.42 16 25 C -0.10 -3.81 5.46 30.66 0.17 -3.65 16 26 H 0.09 1.60 8.14 -2.39 -0.02 1.58 16 27 H 0.08 1.57 8.09 -2.39 -0.02 1.55 16 28 H 0.06 1.56 4.95 -2.39 -0.01 1.55 16 29 H 0.15 1.94 8.06 -2.91 -0.02 1.92 16 30 H 0.15 1.40 8.06 -2.91 -0.02 1.38 16 31 H 0.15 1.63 8.06 -2.91 -0.02 1.60 16 32 H 0.14 2.36 8.06 -2.91 -0.02 2.33 16 33 H 0.17 2.57 8.08 -2.39 -0.02 2.55 16 34 H 0.16 2.93 6.00 -2.39 -0.01 2.91 16 35 H 0.42 10.49 8.80 -96.75 -0.85 9.64 16 36 H 0.06 2.16 7.34 -2.38 -0.02 2.14 16 37 H 0.05 1.97 8.14 -2.39 -0.02 1.95 16 38 H 0.03 1.25 4.78 -2.39 -0.01 1.24 16 39 H 0.03 1.17 8.14 -2.38 -0.02 1.15 16 40 H 0.26 14.36 8.31 -92.70 -0.77 13.59 16 41 H 0.03 1.57 7.07 -2.39 -0.02 1.55 16 42 H 0.01 0.51 8.14 -2.39 -0.02 0.49 16 43 H 0.05 1.83 8.14 -2.39 -0.02 1.82 16 44 H 0.07 2.08 8.14 -2.39 -0.02 2.06 16 Total: -1.00 -68.69 357.49 -0.37 -69.06 By element: Atomic # 1 Polarization: 20.25 SS G_CDS: 0.10 Total: 20.35 kcal Atomic # 6 Polarization: -55.35 SS G_CDS: 2.87 Total: -52.48 kcal Atomic # 7 Polarization: -84.13 SS G_CDS: -0.63 Total: -84.77 kcal Atomic # 8 Polarization: -65.63 SS G_CDS: -4.27 Total: -69.89 kcal Atomic # 14 Polarization: 42.88 SS G_CDS: 1.87 Total: 44.75 kcal Atomic # 16 Polarization: 73.28 SS G_CDS: -0.30 Total: 72.98 kcal Total: -68.69 -0.37 -69.06 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001260023999.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -21.653 kcal (2) G-P(sol) polarization free energy of solvation -68.692 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -90.345 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.371 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.063 kcal (6) G-S(sol) free energy of system = (1) + (5) -90.716 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds