Wall clock time and date at job start Tue Mar 31 2020 14:14:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50694 * 1 3 3 C 1.38257 * 120.00354 * 2 1 4 4 C 1.38206 * 120.00155 * 180.22834 * 3 2 1 5 5 C 1.38259 * 120.00189 * 359.81281 * 4 3 2 6 6 C 1.38212 * 119.99975 * 359.97438 * 5 4 3 7 7 C 1.38222 * 119.99944 * 179.78778 * 2 1 3 8 8 C 1.50699 * 120.00037 * 359.97438 * 7 2 1 9 9 S 1.81397 * 109.47049 * 269.72685 * 8 7 2 10 10 O 1.42101 * 110.54125 * 291.62385 * 9 8 7 11 11 O 1.42096 * 110.54423 * 68.37607 * 9 8 7 12 12 N 1.65600 * 104.44824 * 180.02562 * 9 8 7 13 13 C 1.46497 * 120.00350 * 65.50538 * 12 9 8 14 14 C 1.50703 * 110.01286 * 54.77394 * 13 12 9 15 15 H 1.07995 * 119.99777 * 242.89884 * 14 13 12 16 16 C 1.37877 * 119.99830 * 62.90284 * 14 13 12 17 17 N 1.31510 * 120.00344 * 353.38044 * 16 14 13 18 18 Si 1.86803 * 119.99658 * 173.38488 * 16 14 13 19 19 H 1.48499 * 109.46894 * 359.97438 * 18 16 14 20 20 H 1.48500 * 109.46850 * 119.99614 * 18 16 14 21 21 H 1.48497 * 109.47011 * 239.99465 * 18 16 14 22 22 C 1.54268 * 110.03234 * 293.38155 * 13 12 9 23 23 C 1.54964 * 104.16018 * 217.13384 * 22 13 12 24 24 C 1.54891 * 102.77680 * 37.88894 * 23 22 13 25 25 C 1.53873 * 110.03274 * 176.16658 * 13 12 9 26 26 H 1.08997 * 109.47342 * 270.20695 * 1 2 3 27 27 H 1.09000 * 109.47616 * 30.21099 * 1 2 3 28 28 H 1.09003 * 109.47141 * 150.21110 * 1 2 3 29 29 H 1.08002 * 119.99581 * 0.06754 * 3 2 1 30 30 H 1.08007 * 120.00040 * 179.83456 * 4 3 2 31 31 H 1.08004 * 119.99426 * 179.97438 * 5 4 3 32 32 H 1.07995 * 119.99739 * 179.97438 * 6 5 4 33 33 H 1.09000 * 109.46506 * 149.72474 * 8 7 2 34 34 H 1.08994 * 109.46942 * 29.72807 * 8 7 2 35 35 H 0.97004 * 119.99746 * 245.51524 * 12 9 8 36 36 H 0.96995 * 120.00137 * 185.01285 * 17 16 14 37 37 H 1.08998 * 110.48686 * 335.78388 * 22 13 12 38 38 H 1.09004 * 110.48516 * 98.42516 * 22 13 12 39 39 H 1.09001 * 110.71890 * 279.57640 * 23 22 13 40 40 H 1.08994 * 110.92479 * 156.30026 * 23 22 13 41 41 H 1.09001 * 110.48646 * 203.40825 * 24 23 22 42 42 H 1.09000 * 110.48150 * 80.76205 * 24 23 22 43 43 H 1.09012 * 110.03241 * 238.57255 * 25 13 12 44 44 H 1.09001 * 110.03415 * 0.02562 * 25 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.1983 1.1973 0.0000 4 6 3.5803 1.1973 -0.0048 5 6 4.2716 -0.0001 -0.0056 6 6 3.5806 -1.1970 -0.0012 7 6 2.1980 -1.1970 0.0044 8 6 1.4445 -2.5021 0.0099 9 16 1.1499 -3.0231 1.7222 10 8 2.3721 -3.3842 2.3508 11 8 0.2296 -2.1472 2.3586 12 7 0.3251 -4.4523 1.5832 13 6 0.9809 -5.6223 0.9941 14 6 2.2668 -5.9147 1.7237 15 1 3.2098 -5.8554 1.2008 16 6 2.2391 -6.2579 3.0588 17 7 1.1085 -6.2040 3.7284 18 14 3.8077 -6.7993 3.9166 19 1 4.9343 -6.7752 2.9495 20 1 4.1007 -5.8755 5.0417 21 1 3.6349 -8.1780 4.4403 22 6 1.2669 -5.3710 -0.5009 23 6 1.0165 -6.7456 -1.1711 24 6 -0.2052 -7.2900 -0.3900 25 6 0.0456 -6.8421 1.0647 26 1 -0.3634 0.0037 1.0276 27 1 -0.3634 0.8881 -0.5171 28 1 -0.3633 -0.8919 -0.5106 29 1 1.6583 2.1326 0.0011 30 1 4.1204 2.1326 -0.0075 31 1 5.3517 0.0000 -0.0098 32 1 4.1206 -2.1323 -0.0023 33 1 2.0314 -3.2625 -0.5055 34 1 0.4899 -2.3725 -0.4999 35 1 -0.5925 -4.5147 1.8917 36 1 1.1017 -6.3748 4.6831 37 1 0.5826 -4.6221 -0.8995 38 1 2.3014 -5.0586 -0.6441 39 1 1.8792 -7.3996 -1.0436 40 1 0.7774 -6.6257 -2.2276 41 1 -0.2444 -8.3775 -0.4529 42 1 -1.1275 -6.8514 -0.7706 43 1 0.5221 -7.6460 1.6261 44 1 -0.8964 -6.5635 1.5369 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001260026773.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:14:39 Heat of formation + Delta-G solvation = -52.608889 kcal Electronic energy + Delta-G solvation = -26981.825765 eV Core-core repulsion = 23411.776998 eV Total energy + Delta-G solvation = -3570.048766 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 323.134 amu Computer time = 1.01 seconds Orbital eigenvalues (eV) -39.39931 -37.85746 -35.87022 -34.63958 -33.34295 -32.78722 -32.05139 -31.49889 -28.24655 -27.34688 -26.85214 -26.30232 -23.97642 -22.05342 -20.86717 -19.86576 -19.21598 -18.25549 -16.89797 -16.44642 -15.97087 -15.71417 -15.40714 -14.99559 -14.74803 -14.44000 -14.31555 -13.86572 -13.46329 -13.07922 -12.95372 -12.87676 -12.52513 -12.47617 -12.10551 -11.95232 -11.68515 -11.37360 -11.14313 -10.95996 -10.94973 -10.88436 -10.80099 -10.62182 -10.47754 -10.32580 -10.26814 -10.15310 -10.08386 -9.67326 -9.59345 -9.28623 -8.66004 -8.40264 -8.36029 -7.85532 -5.98904 -4.04250 1.07455 1.48391 1.67929 3.36948 3.48032 3.49617 3.85357 4.00498 4.51968 4.65608 4.77893 4.94269 5.03391 5.10629 5.19124 5.31669 5.38828 5.54551 5.57252 5.60615 5.65012 5.72511 5.77282 5.87998 5.90094 6.04014 6.16696 6.19022 6.32174 6.34285 6.45773 6.49433 6.54602 6.60067 6.61861 6.68189 6.72752 6.72947 7.01678 7.05148 7.09884 7.38676 7.65959 7.97077 8.26899 8.49497 8.94066 9.63540 11.05942 Molecular weight = 323.13amu Principal moments of inertia in cm(-1) A = 0.014462 B = 0.005468 C = 0.004831 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1935.685411 B = 5119.848731 C = 5794.951213 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C -0.076 4.076 3 C -0.123 4.123 4 C -0.119 4.119 5 C -0.126 4.126 6 C -0.102 4.102 7 C -0.076 4.076 8 C -0.618 4.618 9 S 2.607 3.393 10 O -0.919 6.919 11 O -0.995 6.995 12 N -1.076 6.076 13 C 0.296 3.704 14 C -0.510 4.510 15 H 0.064 0.936 16 C 0.095 3.905 17 N -0.867 5.867 18 Si 0.890 3.110 19 H -0.272 1.272 20 H -0.283 1.283 21 H -0.288 1.288 22 C -0.151 4.151 23 C -0.112 4.112 24 C -0.129 4.129 25 C -0.086 4.086 26 H 0.090 0.910 27 H 0.066 0.934 28 H 0.068 0.932 29 H 0.123 0.877 30 H 0.121 0.879 31 H 0.124 0.876 32 H 0.132 0.868 33 H 0.144 0.856 34 H 0.129 0.871 35 H 0.395 0.605 36 H 0.260 0.740 37 H 0.052 0.948 38 H 0.063 0.937 39 H 0.068 0.932 40 H 0.048 0.952 41 H 0.052 0.948 42 H 0.050 0.950 43 H 0.074 0.926 44 H 0.048 0.952 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.740 7.851 -10.164 12.865 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C -0.077 4.077 3 C -0.141 4.141 4 C -0.138 4.138 5 C -0.144 4.144 6 C -0.121 4.121 7 C -0.077 4.077 8 C -0.740 4.740 9 S 2.698 3.302 10 O -0.908 6.908 11 O -0.985 6.985 12 N -0.834 5.834 13 C 0.210 3.790 14 C -0.551 4.551 15 H 0.082 0.918 16 C -0.112 4.112 17 N -0.504 5.504 18 Si 0.719 3.281 19 H -0.196 1.196 20 H -0.209 1.209 21 H -0.215 1.215 22 C -0.190 4.190 23 C -0.150 4.150 24 C -0.167 4.167 25 C -0.127 4.127 26 H 0.108 0.892 27 H 0.085 0.915 28 H 0.086 0.914 29 H 0.141 0.859 30 H 0.139 0.861 31 H 0.142 0.858 32 H 0.150 0.850 33 H 0.162 0.838 34 H 0.147 0.853 35 H 0.228 0.772 36 H 0.070 0.930 37 H 0.071 0.929 38 H 0.081 0.919 39 H 0.086 0.914 40 H 0.067 0.933 41 H 0.070 0.930 42 H 0.068 0.932 43 H 0.093 0.907 44 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges -0.414 8.233 -9.299 12.427 hybrid contribution 0.384 -0.335 -0.019 0.510 sum -0.030 7.898 -9.318 12.215 Atomic orbital electron populations 1.21027 0.91042 1.02498 1.03995 1.19854 0.96387 0.92539 0.98871 1.20971 0.94282 0.97194 1.01696 1.21135 0.94272 0.98007 1.00339 1.21116 0.99948 0.92298 1.01031 1.21222 0.93320 0.99055 0.98509 1.18998 0.93598 0.92336 1.02787 1.30422 1.08719 1.03577 1.31254 1.05561 0.75310 0.73456 0.75919 1.93624 1.47085 1.80427 1.69684 1.93450 1.64648 1.67688 1.72703 1.56055 1.25928 1.24213 1.77214 1.18475 0.91790 0.82427 0.86259 1.21299 0.91505 1.46585 0.95666 0.91763 1.24794 0.95579 0.93465 0.97329 1.69959 1.25465 1.47171 1.07829 0.86573 0.84164 0.77444 0.79965 1.19650 1.20943 1.21453 1.23303 1.00089 0.96972 0.98652 1.22311 0.98538 0.97042 0.97081 1.22444 0.97067 0.99257 0.97892 1.22150 0.98475 0.98983 0.93049 0.89190 0.91502 0.91367 0.85929 0.86081 0.85814 0.85022 0.83779 0.85331 0.77231 0.93020 0.92919 0.91862 0.91366 0.93311 0.92965 0.93164 0.90710 0.93312 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 23. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.75 9.51 36.00 0.34 -1.40 16 2 C -0.08 -1.15 5.88 -104.62 -0.62 -1.76 16 3 C -0.12 -1.63 9.70 -39.59 -0.38 -2.02 16 4 C -0.12 -1.49 10.05 -39.59 -0.40 -1.89 16 5 C -0.13 -1.70 10.05 -39.58 -0.40 -2.10 16 6 C -0.10 -1.62 9.70 -39.58 -0.38 -2.00 16 7 C -0.08 -1.25 5.14 -104.62 -0.54 -1.79 16 8 C -0.62 -10.33 4.26 36.01 0.15 -10.18 16 9 S 2.61 56.16 5.40 -107.50 -0.58 55.58 16 10 O -0.92 -23.50 15.20 -57.54 -0.87 -24.38 16 11 O -0.99 -22.96 17.48 -57.54 -1.01 -23.96 16 12 N -1.08 -23.01 4.81 0.51 0.00 -23.00 16 13 C 0.30 6.34 0.61 -131.85 -0.08 6.26 16 14 C -0.51 -12.84 5.70 -34.44 -0.20 -13.03 16 15 H 0.06 1.64 7.51 -52.49 -0.39 1.24 16 16 C 0.09 2.52 4.38 -17.82 -0.08 2.45 16 17 N -0.87 -23.58 11.91 55.43 0.66 -22.92 16 18 Si 0.89 21.79 29.55 -169.99 -5.02 16.77 16 19 H -0.27 -6.54 7.11 56.52 0.40 -6.14 16 20 H -0.28 -7.19 7.11 56.52 0.40 -6.79 16 21 H -0.29 -6.86 7.11 56.52 0.40 -6.46 16 22 C -0.15 -2.69 4.03 -25.03 -0.10 -2.79 16 23 C -0.11 -1.80 6.91 -24.70 -0.17 -1.97 16 24 C -0.13 -2.13 6.83 -25.07 -0.17 -2.30 16 25 C -0.09 -1.77 5.36 -25.62 -0.14 -1.91 16 26 H 0.09 1.34 7.63 -51.93 -0.40 0.94 16 27 H 0.07 0.71 8.09 -51.93 -0.42 0.29 16 28 H 0.07 0.87 5.94 -51.93 -0.31 0.56 16 29 H 0.12 1.28 8.06 -52.49 -0.42 0.86 16 30 H 0.12 1.15 8.06 -52.48 -0.42 0.72 16 31 H 0.12 1.35 8.06 -52.48 -0.42 0.93 16 32 H 0.13 2.00 8.06 -52.49 -0.42 1.58 16 33 H 0.14 2.29 5.10 -51.92 -0.27 2.02 16 34 H 0.13 1.84 5.87 -51.93 -0.30 1.54 16 35 H 0.40 8.14 8.17 -34.47 -0.28 7.86 16 36 H 0.26 6.94 8.32 -40.82 -0.34 6.60 16 37 H 0.05 0.83 6.73 -51.93 -0.35 0.48 16 38 H 0.06 1.12 6.50 -51.93 -0.34 0.78 16 39 H 0.07 1.12 8.14 -51.93 -0.42 0.70 16 40 H 0.05 0.67 8.14 -51.93 -0.42 0.25 16 41 H 0.05 0.80 8.14 -51.93 -0.42 0.38 16 42 H 0.05 0.76 8.14 -51.93 -0.42 0.33 16 43 H 0.07 1.72 7.12 -51.92 -0.37 1.35 16 44 H 0.05 1.00 7.45 -51.93 -0.39 0.61 16 LS Contribution 352.99 15.07 5.32 5.32 Total: -1.00 -31.41 352.99 -10.99 -42.40 By element: Atomic # 1 Polarization: 16.95 SS G_CDS: -6.33 Total: 10.62 kcal Atomic # 6 Polarization: -33.27 SS G_CDS: -3.16 Total: -36.43 kcal Atomic # 7 Polarization: -46.58 SS G_CDS: 0.66 Total: -45.92 kcal Atomic # 8 Polarization: -46.46 SS G_CDS: -1.88 Total: -48.34 kcal Atomic # 14 Polarization: 21.79 SS G_CDS: -5.02 Total: 16.77 kcal Atomic # 16 Polarization: 56.16 SS G_CDS: -0.58 Total: 55.58 kcal Total LS contribution 5.32 Total: 5.32 kcal Total: -31.41 -10.99 -42.40 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001260026773.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -10.211 kcal (2) G-P(sol) polarization free energy of solvation -31.410 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.621 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.988 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.398 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.609 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.02 seconds