Wall clock time and date at job start Tue Mar 31 2020 14:13:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.38255 * 119.99892 * 2 1 4 4 C 1.38214 * 120.00085 * 180.02562 * 3 2 1 5 5 C 1.38260 * 120.00049 * 359.95630 * 4 3 2 6 6 C 1.38213 * 119.99532 * 0.02562 * 5 4 3 7 7 S 1.76205 * 119.99718 * 179.97438 * 6 5 4 8 8 O 1.42099 * 106.40267 * 358.82585 * 7 6 5 9 9 O 1.42106 * 106.40325 * 225.90885 * 7 6 5 10 10 N 1.65591 * 107.21998 * 112.36894 * 7 6 5 11 11 C 1.46927 * 120.63519 * 94.38369 * 10 7 6 12 12 C 1.53189 * 108.77577 * 233.63408 * 11 10 7 13 13 C 1.53043 * 109.31455 * 305.35721 * 12 11 10 14 14 C 1.53043 * 109.53004 * 61.36924 * 13 12 11 15 15 H 1.08998 * 109.50168 * 58.58862 * 14 13 12 16 16 C 1.50708 * 109.49488 * 178.68432 * 14 13 12 17 17 H 1.08001 * 120.00159 * 119.99943 * 16 14 13 18 18 C 1.37881 * 119.99680 * 300.00204 * 16 14 13 19 19 N 1.31509 * 119.99904 * 359.97438 * 18 16 14 20 20 Si 1.86804 * 119.99721 * 180.02562 * 18 16 14 21 21 H 1.48507 * 109.47127 * 359.97438 * 20 18 16 22 22 H 1.48501 * 109.46964 * 119.99787 * 20 18 16 23 23 H 1.48494 * 109.47038 * 239.99972 * 20 18 16 24 24 C 1.46928 * 120.62928 * 274.40900 * 10 7 6 25 25 C 1.38210 * 120.00216 * 180.22950 * 2 1 3 26 26 C 1.50701 * 120.00203 * 0.02562 * 25 2 1 27 27 H 1.09002 * 109.46491 * 90.00184 * 1 2 3 28 28 H 1.09003 * 109.47276 * 209.99863 * 1 2 3 29 29 H 1.08998 * 109.47403 * 330.00070 * 1 2 3 30 30 H 1.07999 * 120.00301 * 359.97438 * 3 2 1 31 31 H 1.07998 * 120.00174 * 179.97438 * 4 3 2 32 32 H 1.07995 * 120.00386 * 180.02562 * 5 4 3 33 33 H 1.08999 * 109.58430 * 113.84178 * 11 10 7 34 34 H 1.08997 * 109.58190 * 353.41627 * 11 10 7 35 35 H 1.09003 * 109.50308 * 65.31646 * 12 11 10 36 36 H 1.09002 * 109.49816 * 185.41593 * 12 11 10 37 37 H 1.08992 * 109.46374 * 181.38370 * 13 12 11 38 38 H 1.08997 * 109.46433 * 301.36566 * 13 12 11 39 39 H 0.97005 * 119.99820 * 179.97438 * 19 18 16 40 40 H 1.08994 * 109.58907 * 6.57784 * 24 10 7 41 41 H 1.09002 * 109.58775 * 246.15529 * 24 10 7 42 42 H 1.08998 * 109.47389 * 275.80926 * 26 25 2 43 43 H 1.09003 * 109.47064 * 35.80140 * 26 25 2 44 44 H 1.08996 * 109.47477 * 155.80148 * 26 25 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1983 1.1973 0.0000 4 6 3.5804 1.1974 -0.0005 5 6 4.2717 0.0000 -0.0002 6 6 3.5806 -1.1969 0.0002 7 16 4.4617 -2.7229 0.0000 8 8 5.8426 -2.3889 -0.0285 9 8 3.8405 -3.5448 -0.9788 10 7 4.1861 -3.4482 1.4629 11 6 3.1073 -4.4336 1.6185 12 6 2.2118 -4.0041 2.7848 13 6 3.0700 -3.8089 4.0368 14 6 4.0983 -2.7037 3.7850 15 1 3.5826 -1.7790 3.5261 16 6 4.9216 -2.4898 5.0291 17 1 5.9918 -2.6322 4.9995 18 6 4.3085 -2.1124 6.2050 19 7 3.0055 -1.9385 6.2408 20 14 5.3291 -1.8466 7.7468 21 1 6.7600 -2.1043 7.4439 22 1 5.1659 -0.4462 8.2132 23 1 4.8730 -2.7785 8.8091 24 6 5.0153 -3.1183 2.6301 25 6 2.1981 -1.1969 -0.0048 26 6 1.4447 -2.5020 -0.0106 27 1 -0.3632 0.0000 -1.0277 28 1 -0.3634 -0.8900 0.5138 29 1 -0.3634 0.8900 0.5138 30 1 1.6583 2.1327 -0.0004 31 1 4.1204 2.1327 -0.0010 32 1 5.3517 0.0000 -0.0002 33 1 3.5354 -5.4139 1.8281 34 1 2.5182 -4.4780 0.7026 35 1 1.7137 -3.0672 2.5353 36 1 1.4645 -4.7751 2.9727 37 1 2.4318 -3.5271 4.8742 38 1 3.5872 -4.7392 4.2713 39 1 2.5741 -1.6733 7.0682 40 1 5.6850 -2.2951 2.3816 41 1 5.5989 -3.9914 2.9222 42 1 1.1725 -2.7691 1.0105 43 1 0.5414 -2.3975 -0.6117 44 1 2.0749 -3.2836 -0.4349 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001260994165.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:13:33 Heat of formation + Delta-G solvation = -52.691145 kcal Electronic energy + Delta-G solvation = -27061.350029 eV Core-core repulsion = 23491.297696 eV Total energy + Delta-G solvation = -3570.052333 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 323.134 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -39.54753 -37.83554 -37.13969 -35.61096 -33.50807 -33.20744 -32.33382 -31.16063 -30.17775 -27.69141 -26.37104 -25.12101 -23.64891 -22.84272 -21.74337 -20.89650 -19.48910 -18.38149 -17.58168 -16.91443 -16.23930 -16.09247 -15.72739 -15.05791 -14.65776 -14.47690 -14.02275 -13.86514 -13.58153 -13.32788 -13.00757 -12.92214 -12.90962 -12.77361 -12.53361 -12.29260 -12.11330 -12.05128 -11.88998 -11.76212 -11.39528 -11.29099 -11.02324 -10.98534 -10.84998 -10.72159 -10.38149 -10.15839 -9.96333 -9.82886 -9.41710 -9.11226 -8.86621 -8.51486 -8.47636 -8.18523 -6.04674 -4.11626 0.66424 1.00080 1.37543 3.21036 3.26282 3.35022 3.39325 3.59092 4.02283 4.39356 4.51842 4.79006 4.81274 4.96047 5.14782 5.18611 5.24385 5.26609 5.48126 5.52284 5.57605 5.58710 5.62676 5.74599 5.82623 5.91655 5.98583 6.03549 6.18382 6.20403 6.28726 6.30762 6.39526 6.45350 6.50624 6.58849 6.64726 6.85520 6.95985 7.00313 7.18229 7.40588 7.67962 7.90901 8.05995 8.36468 8.92189 9.53519 11.00559 Molecular weight = 323.13amu Principal moments of inertia in cm(-1) A = 0.012910 B = 0.005237 C = 0.004804 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2168.292767 B = 5345.065103 C = 5827.530584 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.114 4.114 2 C -0.113 4.113 3 C -0.065 4.065 4 C -0.145 4.145 5 C -0.022 4.022 6 C -0.670 4.670 7 S 2.691 3.309 8 O -0.963 6.963 9 O -0.967 6.967 10 N -0.988 5.988 11 C 0.115 3.885 12 C -0.139 4.139 13 C -0.109 4.109 14 C 0.039 3.961 15 H 0.030 0.970 16 C -0.515 4.515 17 H 0.058 0.942 18 C 0.064 3.936 19 N -0.888 5.888 20 Si 0.891 3.109 21 H -0.272 1.272 22 H -0.285 1.285 23 H -0.285 1.285 24 C 0.127 3.873 25 C 0.028 3.972 26 C -0.191 4.191 27 H 0.069 0.931 28 H 0.072 0.928 29 H 0.067 0.933 30 H 0.126 0.874 31 H 0.129 0.871 32 H 0.140 0.860 33 H 0.068 0.932 34 H 0.083 0.917 35 H 0.061 0.939 36 H 0.057 0.943 37 H 0.094 0.906 38 H 0.036 0.964 39 H 0.259 0.741 40 H 0.073 0.927 41 H 0.065 0.935 42 H 0.098 0.902 43 H 0.081 0.919 44 H 0.108 0.892 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.147 1.821 -11.999 13.182 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C -0.113 4.113 3 C -0.083 4.083 4 C -0.164 4.164 5 C -0.041 4.041 6 C -0.757 4.757 7 S 2.783 3.217 8 O -0.953 6.953 9 O -0.957 6.957 10 N -0.828 5.828 11 C -0.010 4.010 12 C -0.178 4.178 13 C -0.147 4.147 14 C 0.019 3.981 15 H 0.048 0.952 16 C -0.553 4.553 17 H 0.077 0.923 18 C -0.138 4.138 19 N -0.526 5.526 20 Si 0.719 3.281 21 H -0.197 1.197 22 H -0.211 1.211 23 H -0.211 1.211 24 C 0.004 3.996 25 C 0.027 3.973 26 C -0.246 4.246 27 H 0.087 0.913 28 H 0.091 0.909 29 H 0.086 0.914 30 H 0.144 0.856 31 H 0.147 0.853 32 H 0.158 0.842 33 H 0.087 0.913 34 H 0.101 0.899 35 H 0.080 0.920 36 H 0.076 0.924 37 H 0.113 0.887 38 H 0.055 0.945 39 H 0.069 0.931 40 H 0.092 0.908 41 H 0.083 0.917 42 H 0.116 0.884 43 H 0.099 0.901 44 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges -4.765 1.535 -12.562 13.523 hybrid contribution 0.009 1.005 1.338 1.673 sum -4.756 2.540 -11.225 12.453 Atomic orbital electron populations 1.20808 0.90783 1.03298 1.02156 1.19853 0.96332 0.92691 1.02471 1.21265 0.94433 0.97519 0.95125 1.21188 0.94395 0.98128 1.02697 1.20917 1.00325 0.91097 0.91751 1.30870 1.05722 1.20671 1.18409 1.01897 0.73429 0.73493 0.72912 1.93534 1.30660 1.84762 1.86340 1.93458 1.77293 1.66723 1.58238 1.57573 1.44534 1.53383 1.27262 1.21680 0.88302 0.91336 0.99711 1.22144 0.98022 1.00449 0.97166 1.21569 0.98561 0.98443 0.96137 1.18982 0.92937 0.94704 0.91429 0.95204 1.21149 0.93837 1.46222 0.94137 0.92335 1.24927 0.94897 0.95131 0.98799 1.69881 1.08449 1.47352 1.26962 0.86559 0.80638 0.77717 0.83221 1.19694 1.21119 1.21070 1.21835 0.92853 1.00054 0.84889 1.19324 0.91293 0.95650 0.91078 1.22140 1.02421 0.95220 1.04852 0.91262 0.90912 0.91438 0.85632 0.85311 0.84189 0.91330 0.89865 0.92040 0.92447 0.88742 0.94485 0.93090 0.90830 0.91706 0.88359 0.90060 0.87419 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.20 9.22 36.01 0.33 -0.86 16 2 C -0.11 -1.55 5.88 -104.63 -0.62 -2.16 16 3 C -0.07 -0.84 9.70 -39.58 -0.38 -1.22 16 4 C -0.15 -1.96 10.05 -39.58 -0.40 -2.36 16 5 C -0.02 -0.34 9.55 -39.58 -0.38 -0.72 16 6 C -0.67 -11.15 5.92 -39.58 -0.23 -11.39 16 7 S 2.69 47.19 5.13 -107.50 -0.55 46.64 16 8 O -0.96 -18.80 15.83 -57.17 -0.91 -19.71 16 9 O -0.97 -17.30 14.22 -57.17 -0.81 -18.11 16 10 N -0.99 -17.56 3.29 -113.52 -0.37 -17.93 16 11 C 0.11 1.81 5.48 -3.71 -0.02 1.79 16 12 C -0.14 -2.38 5.58 -26.61 -0.15 -2.52 16 13 C -0.11 -2.36 4.96 -26.69 -0.13 -2.49 16 14 C 0.04 0.92 2.25 -91.65 -0.21 0.71 16 15 H 0.03 0.77 8.14 -51.93 -0.42 0.34 16 16 C -0.51 -13.40 8.56 -34.43 -0.29 -13.70 16 17 H 0.06 1.51 7.74 -52.49 -0.41 1.10 16 18 C 0.06 1.69 5.30 -17.82 -0.09 1.60 16 19 N -0.89 -24.19 11.31 55.43 0.63 -23.56 16 20 Si 0.89 20.64 29.54 -169.99 -5.02 15.62 16 21 H -0.27 -6.25 7.11 56.52 0.40 -5.85 16 22 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 23 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 24 C 0.13 2.57 5.58 -3.71 -0.02 2.55 16 25 C 0.03 0.43 5.87 -104.63 -0.61 -0.19 16 26 C -0.19 -2.59 7.20 36.01 0.26 -2.33 16 27 H 0.07 0.62 8.14 -51.93 -0.42 0.19 16 28 H 0.07 0.74 6.82 -51.93 -0.35 0.39 16 29 H 0.07 0.63 8.09 -51.93 -0.42 0.21 16 30 H 0.13 1.24 8.06 -52.49 -0.42 0.81 16 31 H 0.13 1.36 8.06 -52.49 -0.42 0.94 16 32 H 0.14 2.05 7.33 -52.49 -0.38 1.67 16 33 H 0.07 1.01 8.14 -51.93 -0.42 0.59 16 34 H 0.08 1.16 4.64 -51.93 -0.24 0.92 16 35 H 0.06 1.06 5.84 -51.93 -0.30 0.76 16 36 H 0.06 0.85 8.14 -51.93 -0.42 0.43 16 37 H 0.09 2.32 6.04 -51.93 -0.31 2.01 16 38 H 0.04 0.79 8.14 -51.93 -0.42 0.37 16 39 H 0.26 6.78 8.31 -40.82 -0.34 6.44 16 40 H 0.07 1.49 7.25 -51.93 -0.38 1.11 16 41 H 0.06 1.28 8.14 -51.93 -0.42 0.86 16 42 H 0.10 1.31 4.70 -51.93 -0.24 1.06 16 43 H 0.08 0.90 7.04 -51.93 -0.37 0.53 16 44 H 0.11 1.55 2.98 -51.93 -0.15 1.40 16 LS Contribution 343.50 15.07 5.18 5.18 Total: -1.00 -30.37 343.50 -10.89 -41.26 By element: Atomic # 1 Polarization: 9.97 SS G_CDS: -6.08 Total: 3.89 kcal Atomic # 6 Polarization: -30.33 SS G_CDS: -2.95 Total: -33.28 kcal Atomic # 7 Polarization: -41.74 SS G_CDS: 0.25 Total: -41.49 kcal Atomic # 8 Polarization: -36.10 SS G_CDS: -1.72 Total: -37.82 kcal Atomic # 14 Polarization: 20.64 SS G_CDS: -5.02 Total: 15.62 kcal Atomic # 16 Polarization: 47.19 SS G_CDS: -0.55 Total: 46.64 kcal Total LS contribution 5.18 Total: 5.18 kcal Total: -30.37 -10.89 -41.26 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001260994165.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.426 kcal (2) G-P(sol) polarization free energy of solvation -30.372 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.799 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.892 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.265 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.691 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds