Wall clock time and date at job start Tue Mar 31 2020 14:13:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.38255 * 119.99892 * 2 1 4 4 C 1.38214 * 120.00085 * 180.02562 * 3 2 1 5 5 C 1.38260 * 120.00049 * 359.95630 * 4 3 2 6 6 C 1.38213 * 119.99532 * 0.02562 * 5 4 3 7 7 S 1.76205 * 119.99718 * 179.97438 * 6 5 4 8 8 O 1.42099 * 106.40267 * 358.82585 * 7 6 5 9 9 O 1.42106 * 106.40325 * 225.90885 * 7 6 5 10 10 N 1.65591 * 107.21998 * 112.36894 * 7 6 5 11 11 C 1.46927 * 120.63519 * 94.38369 * 10 7 6 12 12 C 1.53189 * 108.77577 * 233.63408 * 11 10 7 13 13 C 1.53043 * 109.31455 * 305.35721 * 12 11 10 14 14 C 1.53043 * 109.53004 * 61.36924 * 13 12 11 15 15 H 1.08998 * 109.50168 * 58.58862 * 14 13 12 16 16 C 1.50708 * 109.49488 * 178.68432 * 14 13 12 17 17 H 1.08001 * 120.00159 * 119.99943 * 16 14 13 18 18 C 1.37881 * 119.99680 * 300.00204 * 16 14 13 19 19 N 1.31509 * 119.99904 * 359.97438 * 18 16 14 20 20 Si 1.86804 * 119.99721 * 180.02562 * 18 16 14 21 21 H 1.48507 * 109.47127 * 359.97438 * 20 18 16 22 22 H 1.48501 * 109.46964 * 119.99787 * 20 18 16 23 23 H 1.48494 * 109.47038 * 239.99972 * 20 18 16 24 24 C 1.46928 * 120.62928 * 274.40900 * 10 7 6 25 25 C 1.38210 * 120.00216 * 180.22950 * 2 1 3 26 26 C 1.50701 * 120.00203 * 0.02562 * 25 2 1 27 27 H 1.09002 * 109.46491 * 90.00184 * 1 2 3 28 28 H 1.09003 * 109.47276 * 209.99863 * 1 2 3 29 29 H 1.08998 * 109.47403 * 330.00070 * 1 2 3 30 30 H 1.07999 * 120.00301 * 359.97438 * 3 2 1 31 31 H 1.07998 * 120.00174 * 179.97438 * 4 3 2 32 32 H 1.07995 * 120.00386 * 180.02562 * 5 4 3 33 33 H 1.08999 * 109.58430 * 113.84178 * 11 10 7 34 34 H 1.08997 * 109.58190 * 353.41627 * 11 10 7 35 35 H 1.09003 * 109.50308 * 65.31646 * 12 11 10 36 36 H 1.09002 * 109.49816 * 185.41593 * 12 11 10 37 37 H 1.08992 * 109.46374 * 181.38370 * 13 12 11 38 38 H 1.08997 * 109.46433 * 301.36566 * 13 12 11 39 39 H 0.97005 * 119.99820 * 179.97438 * 19 18 16 40 40 H 1.08994 * 109.58907 * 6.57784 * 24 10 7 41 41 H 1.09002 * 109.58775 * 246.15529 * 24 10 7 42 42 H 1.08998 * 109.47389 * 275.80926 * 26 25 2 43 43 H 1.09003 * 109.47064 * 35.80140 * 26 25 2 44 44 H 1.08996 * 109.47477 * 155.80148 * 26 25 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1983 1.1973 0.0000 4 6 3.5804 1.1974 -0.0005 5 6 4.2717 0.0000 -0.0002 6 6 3.5806 -1.1969 0.0002 7 16 4.4617 -2.7229 0.0000 8 8 5.8426 -2.3889 -0.0285 9 8 3.8405 -3.5448 -0.9788 10 7 4.1861 -3.4482 1.4629 11 6 3.1073 -4.4336 1.6185 12 6 2.2118 -4.0041 2.7848 13 6 3.0700 -3.8089 4.0368 14 6 4.0983 -2.7037 3.7850 15 1 3.5826 -1.7790 3.5261 16 6 4.9216 -2.4898 5.0291 17 1 5.9918 -2.6322 4.9995 18 6 4.3085 -2.1124 6.2050 19 7 3.0055 -1.9385 6.2408 20 14 5.3291 -1.8466 7.7468 21 1 6.7600 -2.1043 7.4439 22 1 5.1659 -0.4462 8.2132 23 1 4.8730 -2.7785 8.8091 24 6 5.0153 -3.1183 2.6301 25 6 2.1981 -1.1969 -0.0048 26 6 1.4447 -2.5020 -0.0106 27 1 -0.3632 0.0000 -1.0277 28 1 -0.3634 -0.8900 0.5138 29 1 -0.3634 0.8900 0.5138 30 1 1.6583 2.1327 -0.0004 31 1 4.1204 2.1327 -0.0010 32 1 5.3517 0.0000 -0.0002 33 1 3.5354 -5.4139 1.8281 34 1 2.5182 -4.4780 0.7026 35 1 1.7137 -3.0672 2.5353 36 1 1.4645 -4.7751 2.9727 37 1 2.4318 -3.5271 4.8742 38 1 3.5872 -4.7392 4.2713 39 1 2.5741 -1.6733 7.0682 40 1 5.6850 -2.2951 2.3816 41 1 5.5989 -3.9914 2.9222 42 1 1.1725 -2.7691 1.0105 43 1 0.5414 -2.3975 -0.6117 44 1 2.0749 -3.2836 -0.4349 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001260994165.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:13:32 Heat of formation + Delta-G solvation = -70.303625 kcal Electronic energy + Delta-G solvation = -27062.113763 eV Core-core repulsion = 23491.297696 eV Total energy + Delta-G solvation = -3570.816068 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 323.134 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -40.61054 -39.37143 -38.56836 -37.05041 -35.24898 -34.35684 -33.40009 -32.72793 -31.89958 -28.70578 -27.40154 -26.96353 -25.19342 -23.97308 -23.35604 -21.95046 -21.09372 -19.80494 -19.02119 -18.20056 -18.11172 -17.38178 -16.82531 -16.59399 -16.27950 -15.67461 -15.24131 -15.15959 -15.00919 -14.83325 -14.52646 -14.33665 -14.04619 -13.99497 -13.79171 -13.53980 -13.33665 -13.28533 -13.13123 -12.96032 -12.90916 -12.78105 -12.62498 -12.58201 -12.50876 -12.00587 -11.86866 -11.77060 -11.52039 -11.43654 -11.02598 -10.73821 -10.40083 -10.22802 -9.76930 -9.57596 -8.06227 -6.19629 -0.67149 -0.15358 0.29687 1.41036 1.44559 1.54621 1.87031 2.43500 2.46438 2.70601 3.20997 3.23711 3.70296 3.80923 3.81818 3.95360 4.14409 4.24290 4.28600 4.32995 4.49114 4.53410 4.57539 4.59978 4.72288 4.77714 4.82032 4.83914 4.87134 4.92164 4.94982 5.08650 5.11965 5.16872 5.25412 5.32524 5.35600 5.41372 5.48136 5.56041 5.68378 5.74956 5.93300 6.01871 6.19488 6.41759 6.91200 7.47945 8.97237 Molecular weight = 323.13amu Principal moments of inertia in cm(-1) A = 0.012910 B = 0.005237 C = 0.004804 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2168.292767 B = 5345.065103 C = 5827.530584 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.114 4.114 2 C -0.121 4.121 3 C -0.067 4.067 4 C -0.149 4.149 5 C -0.049 4.049 6 C -0.689 4.689 7 S 2.701 3.299 8 O -0.990 6.990 9 O -0.972 6.972 10 N -0.990 5.990 11 C 0.110 3.890 12 C -0.130 4.130 13 C -0.104 4.104 14 C 0.041 3.959 15 H -0.002 1.002 16 C -0.534 4.534 17 H 0.054 0.946 18 C 0.020 3.980 19 N -0.910 5.910 20 Si 0.948 3.052 21 H -0.269 1.269 22 H -0.284 1.284 23 H -0.280 1.280 24 C 0.138 3.862 25 C 0.008 3.992 26 C -0.191 4.191 27 H 0.088 0.912 28 H 0.074 0.926 29 H 0.081 0.919 30 H 0.160 0.840 31 H 0.156 0.844 32 H 0.137 0.863 33 H 0.083 0.917 34 H 0.107 0.893 35 H 0.059 0.941 36 H 0.085 0.915 37 H 0.063 0.937 38 H 0.034 0.966 39 H 0.259 0.741 40 H 0.066 0.934 41 H 0.069 0.931 42 H 0.099 0.901 43 H 0.106 0.894 44 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.473 2.200 -12.618 14.351 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C -0.122 4.122 3 C -0.085 4.085 4 C -0.167 4.167 5 C -0.068 4.068 6 C -0.778 4.778 7 S 2.795 3.205 8 O -0.980 6.980 9 O -0.962 6.962 10 N -0.828 5.828 11 C -0.014 4.014 12 C -0.169 4.169 13 C -0.142 4.142 14 C 0.021 3.979 15 H 0.016 0.984 16 C -0.573 4.573 17 H 0.072 0.928 18 C -0.180 4.180 19 N -0.550 5.550 20 Si 0.774 3.226 21 H -0.193 1.193 22 H -0.210 1.210 23 H -0.206 1.206 24 C 0.013 3.987 25 C 0.006 3.994 26 C -0.247 4.247 27 H 0.107 0.893 28 H 0.093 0.907 29 H 0.099 0.901 30 H 0.178 0.822 31 H 0.174 0.826 32 H 0.155 0.845 33 H 0.101 0.899 34 H 0.125 0.875 35 H 0.077 0.923 36 H 0.104 0.896 37 H 0.081 0.919 38 H 0.052 0.948 39 H 0.069 0.931 40 H 0.085 0.915 41 H 0.087 0.913 42 H 0.118 0.882 43 H 0.125 0.875 44 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges -6.078 1.878 -13.191 14.645 hybrid contribution 0.377 0.969 1.502 1.827 sum -5.700 2.847 -11.689 13.313 Atomic orbital electron populations 1.20898 0.88386 1.04110 1.03639 1.20332 0.98219 0.92347 1.01292 1.21751 0.94350 0.98820 0.93538 1.21573 0.95170 0.98388 1.01618 1.21124 1.00598 0.91945 0.93142 1.30674 1.06554 1.20008 1.20573 1.01404 0.72865 0.73643 0.72544 1.93490 1.32651 1.85229 1.86659 1.93447 1.77206 1.67353 1.58200 1.57508 1.44854 1.54118 1.26350 1.21896 0.87885 0.91382 1.00240 1.22046 0.98016 1.01467 0.95333 1.21388 0.98149 0.97344 0.97345 1.18881 0.93385 0.94018 0.91586 0.98364 1.21516 0.94029 1.46209 0.95535 0.92776 1.25603 0.95861 0.95101 1.01397 1.70006 1.09556 1.47908 1.27502 0.85662 0.79395 0.77489 0.80026 1.19326 1.21019 1.20625 1.21519 0.92434 0.99923 0.84845 1.19659 0.90979 0.97230 0.91512 1.22164 1.03101 0.94109 1.05285 0.89301 0.90748 0.90056 0.82209 0.82603 0.84470 0.89869 0.87511 0.92278 0.89605 0.91859 0.94759 0.93140 0.91549 0.91310 0.88247 0.87494 0.88398 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -2.04 9.22 71.24 0.66 -1.38 16 2 C -0.12 -3.07 5.88 -19.87 -0.12 -3.18 16 3 C -0.07 -1.56 9.70 22.27 0.22 -1.34 16 4 C -0.15 -3.83 10.05 22.27 0.22 -3.60 16 5 C -0.05 -1.53 9.55 22.27 0.21 -1.32 16 6 C -0.69 -22.95 5.92 22.27 0.13 -22.82 16 7 S 2.70 95.23 5.13 -56.49 -0.29 94.94 16 8 O -0.99 -39.62 15.83 -128.00 -2.03 -41.65 16 9 O -0.97 -34.21 14.22 -128.00 -1.82 -36.03 16 10 N -0.99 -35.06 3.29 -513.08 -1.69 -36.75 16 11 C 0.11 3.33 5.48 86.36 0.47 3.80 16 12 C -0.13 -4.30 5.58 30.67 0.17 -4.13 16 13 C -0.10 -4.53 4.96 30.62 0.15 -4.38 16 14 C 0.04 1.97 2.25 -11.46 -0.03 1.94 16 15 H 0.00 -0.10 8.14 -2.39 -0.02 -0.12 16 16 C -0.53 -28.41 8.56 25.60 0.22 -28.19 16 17 H 0.05 2.85 7.74 -2.91 -0.02 2.82 16 18 C 0.02 1.05 5.30 84.66 0.45 1.50 16 19 N -0.91 -50.43 11.31 21.45 0.24 -50.19 16 20 Si 0.95 42.65 29.54 68.60 2.03 44.68 16 21 H -0.27 -11.83 7.11 99.48 0.71 -11.13 16 22 H -0.28 -12.67 7.11 99.48 0.71 -11.96 16 23 H -0.28 -12.36 7.11 99.48 0.71 -11.65 16 24 C 0.14 5.67 5.58 86.36 0.48 6.15 16 25 C 0.01 0.23 5.87 -19.87 -0.12 0.11 16 26 C -0.19 -4.85 7.20 71.24 0.51 -4.34 16 27 H 0.09 1.26 8.14 -2.39 -0.02 1.24 16 28 H 0.07 1.31 6.82 -2.39 -0.02 1.29 16 29 H 0.08 1.23 8.09 -2.39 -0.02 1.21 16 30 H 0.16 2.54 8.06 -2.91 -0.02 2.52 16 31 H 0.16 3.00 8.06 -2.91 -0.02 2.97 16 32 H 0.14 4.20 7.33 -2.91 -0.02 4.18 16 33 H 0.08 2.29 8.14 -2.39 -0.02 2.27 16 34 H 0.11 2.77 4.64 -2.39 -0.01 2.76 16 35 H 0.06 1.99 5.84 -2.39 -0.01 1.98 16 36 H 0.09 2.36 8.14 -2.39 -0.02 2.34 16 37 H 0.06 3.17 6.04 -2.39 -0.01 3.15 16 38 H 0.03 1.46 8.14 -2.39 -0.02 1.45 16 39 H 0.26 13.73 8.31 -92.70 -0.77 12.95 16 40 H 0.07 2.79 7.25 -2.39 -0.02 2.77 16 41 H 0.07 2.75 8.14 -2.39 -0.02 2.73 16 42 H 0.10 2.47 4.70 -2.39 -0.01 2.46 16 43 H 0.11 2.08 7.04 -2.39 -0.02 2.06 16 44 H 0.10 2.67 2.98 -2.39 -0.01 2.67 16 Total: -1.00 -66.32 343.50 1.10 -65.22 By element: Atomic # 1 Polarization: 19.95 SS G_CDS: 1.02 Total: 20.96 kcal Atomic # 6 Polarization: -64.82 SS G_CDS: 3.64 Total: -61.18 kcal Atomic # 7 Polarization: -85.49 SS G_CDS: -1.45 Total: -86.94 kcal Atomic # 8 Polarization: -73.84 SS G_CDS: -3.85 Total: -77.68 kcal Atomic # 14 Polarization: 42.65 SS G_CDS: 2.03 Total: 44.68 kcal Atomic # 16 Polarization: 95.23 SS G_CDS: -0.29 Total: 94.94 kcal Total: -66.32 1.10 -65.22 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001260994165.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.086 kcal (2) G-P(sol) polarization free energy of solvation -66.318 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -71.404 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.100 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.218 kcal (6) G-S(sol) free energy of system = (1) + (5) -70.304 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds