Wall clock time and date at job start Tue Mar 31 2020 14:13:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 C 1.38253 * 120.00596 * 2 1 4 4 C 1.38214 * 120.00308 * 180.27490 * 3 2 1 5 5 C 1.38256 * 120.00052 * 359.74398 * 4 3 2 6 6 C 1.38216 * 119.99493 * 0.02562 * 5 4 3 7 7 S 1.76203 * 119.99476 * 179.97438 * 6 5 4 8 8 O 1.42105 * 106.40196 * 228.56028 * 7 6 5 9 9 O 1.42104 * 106.40376 * 1.47847 * 7 6 5 10 10 N 1.65608 * 107.22066 * 115.02145 * 7 6 5 11 11 C 1.46922 * 120.63130 * 89.99457 * 10 7 6 12 12 C 1.53188 * 108.77435 * 126.37138 * 11 10 7 13 13 C 1.53037 * 109.31251 * 54.63616 * 12 11 10 14 14 C 1.53046 * 109.53772 * 298.63163 * 13 12 11 15 15 H 1.08994 * 109.50317 * 301.41767 * 14 13 12 16 16 C 1.50701 * 109.49638 * 181.34536 * 14 13 12 17 17 H 1.08001 * 120.00288 * 240.00001 * 16 14 13 18 18 C 1.37882 * 119.99537 * 60.00751 * 16 14 13 19 19 N 1.31504 * 120.00299 * 359.97438 * 18 16 14 20 20 Si 1.86804 * 119.99766 * 179.97438 * 18 16 14 21 21 H 1.48503 * 109.47178 * 89.99721 * 20 18 16 22 22 H 1.48499 * 109.47336 * 209.99951 * 20 18 16 23 23 H 1.48504 * 109.47088 * 330.00042 * 20 18 16 24 24 C 1.46921 * 120.62634 * 269.71955 * 10 7 6 25 25 C 1.38218 * 119.99818 * 179.76321 * 2 1 3 26 26 C 1.50703 * 119.99968 * 0.02562 * 25 2 1 27 27 H 1.08995 * 109.47734 * 270.23743 * 1 2 3 28 28 H 1.09002 * 109.46829 * 30.23687 * 1 2 3 29 29 H 1.09000 * 109.47496 * 150.23001 * 1 2 3 30 30 H 1.08000 * 119.99553 * 359.97438 * 3 2 1 31 31 H 1.08001 * 120.00174 * 179.72549 * 4 3 2 32 32 H 1.07994 * 119.99973 * 179.97438 * 5 4 3 33 33 H 1.09001 * 109.58852 * 246.15769 * 11 10 7 34 34 H 1.09000 * 109.58841 * 6.58399 * 11 10 7 35 35 H 1.08998 * 109.49920 * 174.58665 * 12 11 10 36 36 H 1.09004 * 109.50105 * 294.68682 * 12 11 10 37 37 H 1.08995 * 109.46176 * 58.65416 * 13 12 11 38 38 H 1.09001 * 109.46265 * 178.62921 * 13 12 11 39 39 H 0.97005 * 120.00531 * 180.02562 * 19 18 16 40 40 H 1.08995 * 109.59137 * 353.41497 * 24 10 7 41 41 H 1.09002 * 109.59021 * 113.84291 * 24 10 7 42 42 H 1.09002 * 109.47152 * 269.72462 * 26 25 2 43 43 H 1.09001 * 109.46980 * 149.72562 * 26 25 2 44 44 H 1.09004 * 109.47113 * 29.72543 * 26 25 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.1983 1.1972 0.0000 4 6 3.5805 1.1972 -0.0057 5 6 4.2717 -0.0002 -0.0061 6 6 3.5805 -1.1971 -0.0013 7 16 4.4615 -2.7231 -0.0025 8 8 3.8765 -3.5233 -1.0207 9 8 5.8424 -2.3892 0.0264 10 7 4.1331 -3.4799 1.4335 11 6 2.9903 -4.3955 1.5530 12 6 3.4878 -5.7356 2.1036 13 6 4.2409 -5.4961 3.4141 14 6 5.4546 -4.6017 3.1509 15 1 6.1049 -5.0775 2.4168 16 6 6.2141 -4.3934 4.4357 17 1 6.3477 -3.3963 4.8286 18 6 6.7386 -5.4760 5.1096 19 7 6.5756 -6.6901 4.6315 20 14 7.6807 -5.2179 6.7019 21 1 6.7392 -5.2751 7.8490 22 1 8.7054 -6.2825 6.8490 23 1 8.3463 -3.8907 6.6737 24 6 4.9827 -3.2530 2.6105 25 6 2.1980 -1.1970 0.0049 26 6 1.4444 -2.5021 0.0098 27 1 -0.3634 0.0043 1.0276 28 1 -0.3633 0.8879 -0.5175 29 1 -0.3634 -0.8920 -0.5102 30 1 1.6584 2.1326 -0.0004 31 1 4.1205 2.1324 -0.0102 32 1 5.3516 -0.0002 -0.0110 33 1 2.2523 -3.9718 2.2341 34 1 2.5401 -4.5480 0.5721 35 1 2.6370 -6.3916 2.2877 36 1 4.1566 -6.2008 1.3795 37 1 3.5789 -5.0084 4.1296 38 1 4.5750 -6.4506 3.8207 39 1 6.9443 -7.4518 5.1058 40 1 5.8467 -2.6519 2.3272 41 1 4.4105 -2.7343 3.3797 42 1 1.2666 -2.8152 1.0386 43 1 2.0316 -3.2625 -0.5051 44 1 0.4901 -2.3725 -0.5007 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001260994166.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:13:36 Heat of formation + Delta-G solvation = -53.343828 kcal Electronic energy + Delta-G solvation = -26500.661303 eV Core-core repulsion = 22930.580667 eV Total energy + Delta-G solvation = -3570.080636 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 323.134 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -39.73213 -37.79622 -37.11941 -35.57235 -33.66430 -33.27420 -32.49496 -31.09986 -30.15014 -27.89546 -26.62542 -25.08031 -23.64475 -22.96780 -21.69870 -21.04489 -19.51139 -18.36957 -17.51092 -17.06867 -16.25730 -16.11158 -15.83638 -15.19933 -14.62914 -14.51916 -14.14433 -13.95184 -13.56150 -13.48849 -13.19815 -12.99025 -12.89659 -12.75955 -12.66011 -12.37846 -12.20595 -12.13802 -11.95055 -11.76933 -11.45198 -11.30914 -11.09432 -10.96191 -10.81081 -10.70910 -10.47838 -10.19010 -9.91425 -9.78021 -9.39541 -9.31008 -8.82955 -8.74319 -8.44016 -8.16913 -5.99949 -4.07319 0.57939 0.84097 1.16819 3.15615 3.30378 3.37647 3.40802 3.47581 4.00837 4.39690 4.43124 4.62465 4.64670 4.80885 4.91353 5.06232 5.18264 5.25988 5.30347 5.31615 5.45306 5.50481 5.58148 5.64845 5.69970 5.75893 5.83584 5.99995 6.02707 6.13521 6.20225 6.24137 6.31030 6.34283 6.48379 6.62778 6.65021 6.76310 6.88676 7.02725 7.22921 7.45002 7.71976 7.96996 8.10707 8.40134 8.95949 9.57357 11.05498 Molecular weight = 323.13amu Principal moments of inertia in cm(-1) A = 0.018399 B = 0.003991 C = 0.003818 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1521.494045 B = 7014.633599 C = 7331.743908 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.116 4.116 2 C -0.114 4.114 3 C -0.068 4.068 4 C -0.146 4.146 5 C -0.024 4.024 6 C -0.672 4.672 7 S 2.687 3.313 8 O -0.964 6.964 9 O -0.956 6.956 10 N -0.987 5.987 11 C 0.116 3.884 12 C -0.132 4.132 13 C -0.110 4.110 14 C 0.041 3.959 15 H 0.032 0.968 16 C -0.515 4.515 17 H 0.057 0.943 18 C 0.064 3.936 19 N -0.888 5.888 20 Si 0.892 3.108 21 H -0.281 1.281 22 H -0.287 1.287 23 H -0.274 1.274 24 C 0.125 3.875 25 C 0.022 3.978 26 C -0.186 4.186 27 H 0.072 0.928 28 H 0.065 0.935 29 H 0.073 0.927 30 H 0.126 0.874 31 H 0.130 0.870 32 H 0.143 0.857 33 H 0.062 0.938 34 H 0.083 0.917 35 H 0.057 0.943 36 H 0.060 0.940 37 H 0.035 0.965 38 H 0.095 0.905 39 H 0.260 0.740 40 H 0.079 0.921 41 H 0.057 0.943 42 H 0.092 0.908 43 H 0.108 0.892 44 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.767 11.945 -8.695 19.526 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C -0.115 4.115 3 C -0.086 4.086 4 C -0.165 4.165 5 C -0.043 4.043 6 C -0.757 4.757 7 S 2.779 3.221 8 O -0.954 6.954 9 O -0.946 6.946 10 N -0.827 5.827 11 C -0.009 4.009 12 C -0.172 4.172 13 C -0.148 4.148 14 C 0.021 3.979 15 H 0.050 0.950 16 C -0.554 4.554 17 H 0.076 0.924 18 C -0.138 4.138 19 N -0.526 5.526 20 Si 0.720 3.280 21 H -0.208 1.208 22 H -0.213 1.213 23 H -0.199 1.199 24 C 0.001 3.999 25 C 0.020 3.980 26 C -0.241 4.241 27 H 0.091 0.909 28 H 0.084 0.916 29 H 0.092 0.908 30 H 0.144 0.856 31 H 0.148 0.852 32 H 0.160 0.840 33 H 0.080 0.920 34 H 0.102 0.898 35 H 0.076 0.924 36 H 0.078 0.922 37 H 0.054 0.946 38 H 0.113 0.887 39 H 0.070 0.930 40 H 0.098 0.902 41 H 0.075 0.925 42 H 0.111 0.889 43 H 0.126 0.874 44 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges -12.199 11.482 -9.336 19.179 hybrid contribution 0.071 0.847 1.240 1.503 sum -12.128 12.329 -8.096 19.096 Atomic orbital electron populations 1.20858 0.90734 1.03033 1.02618 1.19875 0.96359 0.92696 1.02590 1.21273 0.94425 0.97519 0.95384 1.21229 0.94395 0.98196 1.02656 1.20983 1.00550 0.91017 0.91728 1.31104 1.05741 1.21141 1.17763 1.02087 0.73487 0.73436 0.73140 1.93482 1.78682 1.67348 1.55871 1.93553 1.30140 1.84645 1.86273 1.57543 1.40141 1.56431 1.28598 1.21777 0.87187 0.90786 1.01135 1.21980 0.99991 0.94729 1.00459 1.21592 0.96213 1.03848 0.93166 1.18874 0.93482 0.89482 0.96048 0.94965 1.21080 1.33994 0.93250 1.07048 0.92449 1.24930 0.96001 0.95203 0.97640 1.69870 1.45437 0.98137 1.39165 0.86593 0.79737 0.77926 0.83710 1.20769 1.21266 1.19876 1.21784 0.92016 1.01528 0.84523 1.19366 0.91367 0.95687 0.91544 1.22062 1.02415 0.95113 1.04550 0.90922 0.91580 0.90831 0.85573 0.85214 0.83973 0.91974 0.89842 0.92446 0.92159 0.94617 0.88665 0.92960 0.90236 0.92497 0.88932 0.87427 0.89681 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.93 9.60 36.00 0.35 -0.58 16 2 C -0.11 -1.29 5.88 -104.63 -0.62 -1.90 16 3 C -0.07 -0.71 9.70 -39.58 -0.38 -1.09 16 4 C -0.15 -1.64 10.05 -39.58 -0.40 -2.04 16 5 C -0.02 -0.32 9.55 -39.58 -0.38 -0.70 16 6 C -0.67 -10.06 5.91 -39.58 -0.23 -10.29 16 7 S 2.69 47.02 5.19 -107.50 -0.56 46.47 16 8 O -0.96 -17.73 14.36 -57.17 -0.82 -18.55 16 9 O -0.96 -19.28 15.55 -57.17 -0.89 -20.16 16 10 N -0.99 -17.57 3.28 -113.77 -0.37 -17.94 16 11 C 0.12 1.84 4.54 -3.72 -0.02 1.82 16 12 C -0.13 -2.41 6.08 -26.61 -0.16 -2.57 16 13 C -0.11 -2.45 4.96 -26.69 -0.13 -2.58 16 14 C 0.04 1.00 2.24 -91.87 -0.21 0.80 16 15 H 0.03 0.87 8.14 -51.93 -0.42 0.45 16 16 C -0.51 -13.68 8.57 -34.44 -0.29 -13.98 16 17 H 0.06 1.49 7.75 -52.49 -0.41 1.08 16 18 C 0.06 1.72 5.30 -17.82 -0.09 1.63 16 19 N -0.89 -24.77 11.31 55.43 0.63 -24.14 16 20 Si 0.89 20.88 29.54 -169.99 -5.02 15.86 16 21 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 22 H -0.29 -6.72 7.11 56.52 0.40 -6.32 16 23 H -0.27 -6.35 7.11 56.52 0.40 -5.95 16 24 C 0.13 2.55 5.67 -3.93 -0.02 2.53 16 25 C 0.02 0.29 5.87 -104.62 -0.61 -0.33 16 26 C -0.19 -2.15 7.63 36.01 0.27 -1.88 16 27 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 28 H 0.07 0.43 8.09 -51.93 -0.42 0.01 16 29 H 0.07 0.54 5.94 -51.93 -0.31 0.23 16 30 H 0.13 0.94 8.06 -52.49 -0.42 0.51 16 31 H 0.13 1.09 8.06 -52.49 -0.42 0.67 16 32 H 0.14 1.87 7.33 -52.49 -0.38 1.48 16 33 H 0.06 0.85 7.12 -51.93 -0.37 0.48 16 34 H 0.08 1.17 4.97 -51.93 -0.26 0.91 16 35 H 0.06 0.90 8.14 -51.93 -0.42 0.48 16 36 H 0.06 1.17 8.14 -51.93 -0.42 0.74 16 37 H 0.04 0.77 8.14 -51.93 -0.42 0.34 16 38 H 0.10 2.41 6.04 -51.93 -0.31 2.09 16 39 H 0.26 6.96 8.31 -40.82 -0.34 6.62 16 40 H 0.08 1.64 6.91 -51.93 -0.36 1.28 16 41 H 0.06 1.09 8.14 -51.93 -0.42 0.67 16 42 H 0.09 0.96 6.09 -51.93 -0.32 0.65 16 43 H 0.11 1.42 3.41 -51.93 -0.18 1.25 16 44 H 0.08 0.77 5.94 -51.93 -0.31 0.46 16 LS Contribution 344.96 15.07 5.20 5.20 Total: -1.00 -31.40 344.96 -10.91 -42.30 By element: Atomic # 1 Polarization: 8.30 SS G_CDS: -6.14 Total: 2.16 kcal Atomic # 6 Polarization: -28.25 SS G_CDS: -2.93 Total: -31.18 kcal Atomic # 7 Polarization: -42.34 SS G_CDS: 0.25 Total: -42.08 kcal Atomic # 8 Polarization: -37.01 SS G_CDS: -1.71 Total: -38.72 kcal Atomic # 14 Polarization: 20.88 SS G_CDS: -5.02 Total: 15.86 kcal Atomic # 16 Polarization: 47.02 SS G_CDS: -0.56 Total: 46.47 kcal Total LS contribution 5.20 Total: 5.20 kcal Total: -31.40 -10.91 -42.30 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001260994166.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.039 kcal (2) G-P(sol) polarization free energy of solvation -31.398 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.437 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.907 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.305 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.344 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds