Wall clock time and date at job start Tue Mar 31 2020 14:13:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 C 1.38253 * 120.00596 * 2 1 4 4 C 1.38214 * 120.00308 * 180.27490 * 3 2 1 5 5 C 1.38256 * 120.00052 * 359.74398 * 4 3 2 6 6 C 1.38216 * 119.99493 * 0.02562 * 5 4 3 7 7 S 1.76203 * 119.99476 * 179.97438 * 6 5 4 8 8 O 1.42105 * 106.40196 * 228.56028 * 7 6 5 9 9 O 1.42104 * 106.40376 * 1.47847 * 7 6 5 10 10 N 1.65608 * 107.22066 * 115.02145 * 7 6 5 11 11 C 1.46922 * 120.63130 * 89.99457 * 10 7 6 12 12 C 1.53188 * 108.77435 * 126.37138 * 11 10 7 13 13 C 1.53037 * 109.31251 * 54.63616 * 12 11 10 14 14 C 1.53046 * 109.53772 * 298.63163 * 13 12 11 15 15 H 1.08994 * 109.50317 * 301.41767 * 14 13 12 16 16 C 1.50701 * 109.49638 * 181.34536 * 14 13 12 17 17 H 1.08001 * 120.00288 * 240.00001 * 16 14 13 18 18 C 1.37882 * 119.99537 * 60.00751 * 16 14 13 19 19 N 1.31504 * 120.00299 * 359.97438 * 18 16 14 20 20 Si 1.86804 * 119.99766 * 179.97438 * 18 16 14 21 21 H 1.48503 * 109.47178 * 89.99721 * 20 18 16 22 22 H 1.48499 * 109.47336 * 209.99951 * 20 18 16 23 23 H 1.48504 * 109.47088 * 330.00042 * 20 18 16 24 24 C 1.46921 * 120.62634 * 269.71955 * 10 7 6 25 25 C 1.38218 * 119.99818 * 179.76321 * 2 1 3 26 26 C 1.50703 * 119.99968 * 0.02562 * 25 2 1 27 27 H 1.08995 * 109.47734 * 270.23743 * 1 2 3 28 28 H 1.09002 * 109.46829 * 30.23687 * 1 2 3 29 29 H 1.09000 * 109.47496 * 150.23001 * 1 2 3 30 30 H 1.08000 * 119.99553 * 359.97438 * 3 2 1 31 31 H 1.08001 * 120.00174 * 179.72549 * 4 3 2 32 32 H 1.07994 * 119.99973 * 179.97438 * 5 4 3 33 33 H 1.09001 * 109.58852 * 246.15769 * 11 10 7 34 34 H 1.09000 * 109.58841 * 6.58399 * 11 10 7 35 35 H 1.08998 * 109.49920 * 174.58665 * 12 11 10 36 36 H 1.09004 * 109.50105 * 294.68682 * 12 11 10 37 37 H 1.08995 * 109.46176 * 58.65416 * 13 12 11 38 38 H 1.09001 * 109.46265 * 178.62921 * 13 12 11 39 39 H 0.97005 * 120.00531 * 180.02562 * 19 18 16 40 40 H 1.08995 * 109.59137 * 353.41497 * 24 10 7 41 41 H 1.09002 * 109.59021 * 113.84291 * 24 10 7 42 42 H 1.09002 * 109.47152 * 269.72462 * 26 25 2 43 43 H 1.09001 * 109.46980 * 149.72562 * 26 25 2 44 44 H 1.09004 * 109.47113 * 29.72543 * 26 25 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.1983 1.1972 0.0000 4 6 3.5805 1.1972 -0.0057 5 6 4.2717 -0.0002 -0.0061 6 6 3.5805 -1.1971 -0.0013 7 16 4.4615 -2.7231 -0.0025 8 8 3.8765 -3.5233 -1.0207 9 8 5.8424 -2.3892 0.0264 10 7 4.1331 -3.4799 1.4335 11 6 2.9903 -4.3955 1.5530 12 6 3.4878 -5.7356 2.1036 13 6 4.2409 -5.4961 3.4141 14 6 5.4546 -4.6017 3.1509 15 1 6.1049 -5.0775 2.4168 16 6 6.2141 -4.3934 4.4357 17 1 6.3477 -3.3963 4.8286 18 6 6.7386 -5.4760 5.1096 19 7 6.5756 -6.6901 4.6315 20 14 7.6807 -5.2179 6.7019 21 1 6.7392 -5.2751 7.8490 22 1 8.7054 -6.2825 6.8490 23 1 8.3463 -3.8907 6.6737 24 6 4.9827 -3.2530 2.6105 25 6 2.1980 -1.1970 0.0049 26 6 1.4444 -2.5021 0.0098 27 1 -0.3634 0.0043 1.0276 28 1 -0.3633 0.8879 -0.5175 29 1 -0.3634 -0.8920 -0.5102 30 1 1.6584 2.1326 -0.0004 31 1 4.1205 2.1324 -0.0102 32 1 5.3516 -0.0002 -0.0110 33 1 2.2523 -3.9718 2.2341 34 1 2.5401 -4.5480 0.5721 35 1 2.6370 -6.3916 2.2877 36 1 4.1566 -6.2008 1.3795 37 1 3.5789 -5.0084 4.1296 38 1 4.5750 -6.4506 3.8207 39 1 6.9443 -7.4518 5.1058 40 1 5.8467 -2.6519 2.3272 41 1 4.4105 -2.7343 3.3797 42 1 1.2666 -2.8152 1.0386 43 1 2.0316 -3.2625 -0.5051 44 1 0.4901 -2.3725 -0.5007 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001260994166.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:13:35 Heat of formation + Delta-G solvation = -72.544362 kcal Electronic energy + Delta-G solvation = -26501.493900 eV Core-core repulsion = 22930.580667 eV Total energy + Delta-G solvation = -3570.913233 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 323.134 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -40.62014 -39.37158 -38.55889 -37.02759 -35.27803 -34.38406 -33.42711 -32.70650 -31.90324 -28.73951 -27.47677 -26.93768 -25.20197 -23.96243 -23.33757 -21.94668 -21.15878 -19.72425 -18.98572 -18.34104 -18.03143 -17.36520 -16.77411 -16.59784 -16.33681 -15.44039 -15.39705 -15.19900 -15.07282 -14.82822 -14.51745 -14.31352 -14.06752 -13.98601 -13.79388 -13.58299 -13.32074 -13.27933 -13.13611 -12.94537 -12.89421 -12.78366 -12.63756 -12.55389 -12.47742 -11.93657 -11.83296 -11.76087 -11.66077 -11.42118 -11.04901 -10.76389 -10.40285 -10.26445 -9.77559 -9.60081 -8.05962 -6.21049 -0.70388 -0.18910 0.27934 1.43592 1.45163 1.54912 1.89202 2.45442 2.47449 2.71709 3.20898 3.24184 3.68490 3.80063 3.82360 3.96659 4.13170 4.25170 4.28625 4.32143 4.46493 4.56621 4.56764 4.61455 4.67249 4.77171 4.82239 4.85077 4.89456 4.90305 4.96393 5.08169 5.12030 5.14707 5.28715 5.32298 5.34636 5.38103 5.48964 5.54323 5.66463 5.73835 5.92164 5.99772 6.19041 6.39219 6.90375 7.46938 8.98022 Molecular weight = 323.13amu Principal moments of inertia in cm(-1) A = 0.018399 B = 0.003991 C = 0.003818 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1521.494045 B = 7014.633599 C = 7331.743908 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.116 4.116 2 C -0.117 4.117 3 C -0.062 4.062 4 C -0.145 4.145 5 C -0.049 4.049 6 C -0.683 4.683 7 S 2.692 3.308 8 O -0.980 6.980 9 O -0.996 6.996 10 N -0.992 5.992 11 C 0.114 3.886 12 C -0.130 4.130 13 C -0.103 4.103 14 C 0.035 3.965 15 H -0.013 1.013 16 C -0.534 4.534 17 H 0.059 0.941 18 C 0.015 3.985 19 N -0.916 5.916 20 Si 0.955 3.045 21 H -0.272 1.272 22 H -0.287 1.287 23 H -0.269 1.269 24 C 0.138 3.862 25 C 0.006 3.994 26 C -0.190 4.190 27 H 0.083 0.917 28 H 0.085 0.915 29 H 0.080 0.920 30 H 0.164 0.836 31 H 0.158 0.842 32 H 0.134 0.866 33 H 0.094 0.906 34 H 0.105 0.895 35 H 0.088 0.912 36 H 0.038 0.962 37 H 0.042 0.958 38 H 0.060 0.940 39 H 0.260 0.740 40 H 0.067 0.933 41 H 0.073 0.927 42 H 0.105 0.895 43 H 0.088 0.912 44 H 0.111 0.889 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.766 14.446 -8.392 22.971 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C -0.117 4.117 3 C -0.080 4.080 4 C -0.164 4.164 5 C -0.069 4.069 6 C -0.773 4.773 7 S 2.789 3.211 8 O -0.970 6.970 9 O -0.986 6.986 10 N -0.831 5.831 11 C -0.010 4.010 12 C -0.169 4.169 13 C -0.141 4.141 14 C 0.015 3.985 15 H 0.005 0.995 16 C -0.573 4.573 17 H 0.077 0.923 18 C -0.184 4.184 19 N -0.555 5.555 20 Si 0.781 3.219 21 H -0.197 1.197 22 H -0.213 1.213 23 H -0.194 1.194 24 C 0.014 3.986 25 C 0.005 3.995 26 C -0.245 4.245 27 H 0.102 0.898 28 H 0.104 0.896 29 H 0.099 0.901 30 H 0.182 0.818 31 H 0.176 0.824 32 H 0.152 0.848 33 H 0.112 0.888 34 H 0.123 0.877 35 H 0.107 0.893 36 H 0.057 0.943 37 H 0.061 0.939 38 H 0.079 0.921 39 H 0.069 0.931 40 H 0.086 0.914 41 H 0.092 0.908 42 H 0.123 0.877 43 H 0.106 0.894 44 H 0.130 0.870 Dipole moment (debyes) X Y Z Total from point charges -15.183 13.936 -9.036 22.503 hybrid contribution 0.957 0.155 1.076 1.449 sum -14.226 14.091 -7.960 21.547 Atomic orbital electron populations 1.20954 0.88140 1.04420 1.03705 1.20323 0.98257 0.92064 1.01101 1.21781 0.94148 0.98905 0.93144 1.21585 0.95237 0.98151 1.01408 1.21131 1.00594 0.91907 0.93250 1.30510 1.06553 1.19187 1.21028 1.01516 0.72830 0.74128 0.72638 1.93459 1.78671 1.68668 1.56194 1.93493 1.33103 1.85392 1.86659 1.57436 1.40380 1.57689 1.27558 1.22004 0.86947 0.89032 1.03016 1.21933 1.00228 0.96978 0.97739 1.21386 0.95842 1.01520 0.95337 1.18847 0.93647 0.91747 0.94268 0.99511 1.21478 1.34443 0.93377 1.07995 0.92283 1.25714 0.96943 0.94970 1.00802 1.70027 1.46246 0.98790 1.40423 0.85602 0.78466 0.77769 0.80064 1.19735 1.21334 1.19373 1.21412 0.92440 0.99045 0.85732 1.19660 0.90647 0.97412 0.91791 1.22123 1.03140 0.93839 1.05446 0.89815 0.89607 0.90144 0.81830 0.82428 0.84781 0.88834 0.87708 0.89339 0.94334 0.93886 0.92105 0.93078 0.91413 0.90840 0.87652 0.89398 0.87010 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.31 9.60 71.23 0.68 -0.62 16 2 C -0.12 -2.18 5.88 -19.87 -0.12 -2.30 16 3 C -0.06 -1.03 9.70 22.27 0.22 -0.82 16 4 C -0.15 -2.87 10.05 22.27 0.22 -2.65 16 5 C -0.05 -1.33 9.55 22.27 0.21 -1.11 16 6 C -0.68 -20.03 5.91 22.27 0.13 -19.90 16 7 S 2.69 96.84 5.19 -56.49 -0.29 96.55 16 8 O -0.98 -36.76 14.36 -128.00 -1.84 -38.60 16 9 O -1.00 -42.58 15.55 -128.00 -1.99 -44.58 16 10 N -0.99 -35.65 3.28 -513.87 -1.69 -37.34 16 11 C 0.11 3.47 4.54 86.36 0.39 3.86 16 12 C -0.13 -4.72 6.08 30.67 0.19 -4.54 16 13 C -0.10 -4.68 4.96 30.62 0.15 -4.53 16 14 C 0.04 1.77 2.24 -11.60 -0.03 1.75 16 15 H -0.01 -0.78 8.14 -2.39 -0.02 -0.80 16 16 C -0.53 -29.25 8.57 25.60 0.22 -29.03 16 17 H 0.06 3.12 7.75 -2.91 -0.02 3.10 16 18 C 0.01 0.81 5.30 84.66 0.45 1.25 16 19 N -0.92 -53.00 11.31 21.45 0.24 -52.75 16 20 Si 0.96 43.47 29.54 68.60 2.03 45.49 16 21 H -0.27 -11.88 7.11 99.48 0.71 -11.18 16 22 H -0.29 -13.02 7.11 99.48 0.71 -12.31 16 23 H -0.27 -11.93 7.11 99.48 0.71 -11.23 16 24 C 0.14 5.78 5.67 86.22 0.49 6.27 16 25 C 0.01 0.15 5.87 -19.87 -0.12 0.04 16 26 C -0.19 -3.89 7.63 71.24 0.54 -3.35 16 27 H 0.08 0.81 8.14 -2.39 -0.02 0.79 16 28 H 0.09 0.66 8.09 -2.39 -0.02 0.64 16 29 H 0.08 0.81 5.94 -2.39 -0.01 0.79 16 30 H 0.16 1.49 8.06 -2.91 -0.02 1.46 16 31 H 0.16 2.13 8.06 -2.91 -0.02 2.11 16 32 H 0.13 3.67 7.33 -2.91 -0.02 3.65 16 33 H 0.09 2.29 7.12 -2.39 -0.02 2.27 16 34 H 0.10 2.79 4.97 -2.39 -0.01 2.77 16 35 H 0.09 2.65 8.14 -2.39 -0.02 2.63 16 36 H 0.04 1.54 8.14 -2.38 -0.02 1.52 16 37 H 0.04 1.85 8.14 -2.39 -0.02 1.83 16 38 H 0.06 3.20 6.04 -2.39 -0.01 3.18 16 39 H 0.26 14.35 8.31 -92.70 -0.77 13.58 16 40 H 0.07 2.95 6.91 -2.39 -0.02 2.93 16 41 H 0.07 2.80 8.14 -2.39 -0.02 2.79 16 42 H 0.11 1.84 6.09 -2.39 -0.01 1.83 16 43 H 0.09 2.19 3.41 -2.39 -0.01 2.18 16 44 H 0.11 1.62 5.94 -2.38 -0.01 1.61 16 Total: -1.00 -71.87 344.96 1.11 -70.75 By element: Atomic # 1 Polarization: 15.14 SS G_CDS: 1.01 Total: 16.15 kcal Atomic # 6 Polarization: -59.32 SS G_CDS: 3.64 Total: -55.68 kcal Atomic # 7 Polarization: -88.64 SS G_CDS: -1.45 Total: -90.09 kcal Atomic # 8 Polarization: -79.35 SS G_CDS: -3.83 Total: -83.17 kcal Atomic # 14 Polarization: 43.47 SS G_CDS: 2.03 Total: 45.49 kcal Atomic # 16 Polarization: 96.84 SS G_CDS: -0.29 Total: 96.55 kcal Total: -71.87 1.11 -70.75 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001260994166.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.792 kcal (2) G-P(sol) polarization free energy of solvation -71.865 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -73.657 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.113 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.753 kcal (6) G-S(sol) free energy of system = (1) + (5) -72.544 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds