Wall clock time and date at job start Tue Mar 31 2020 14:28:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.38251 * 120.00235 * 2 1 4 4 C 1.38217 * 120.00495 * 179.97438 * 3 2 1 5 5 C 1.38259 * 119.99560 * 0.02562 * 4 3 2 6 6 C 1.38218 * 120.00027 * 359.74343 * 5 4 3 7 7 S 1.76200 * 120.00042 * 180.27765 * 6 5 4 8 8 O 1.42093 * 106.40286 * 356.59627 * 7 6 5 9 9 O 1.42102 * 106.40031 * 129.52043 * 7 6 5 10 10 N 1.65608 * 107.21617 * 243.05494 * 7 6 5 11 11 C 1.46498 * 119.99602 * 65.44301 * 10 7 6 12 12 H 1.09000 * 109.41479 * 334.61114 * 11 10 7 13 13 C 1.52958 * 109.41709 * 94.39903 * 11 10 7 14 14 C 1.53231 * 109.40709 * 183.70121 * 13 11 10 15 15 C 1.51270 * 108.53301 * 305.37355 * 14 13 11 16 16 C 1.37881 * 120.84702 * 231.32018 * 15 14 13 17 17 N 1.31510 * 119.99675 * 180.02562 * 16 15 14 18 18 Si 1.86794 * 120.00061 * 0.02836 * 16 15 14 19 19 H 1.48505 * 109.47049 * 89.99965 * 18 16 15 20 20 H 1.48501 * 109.47351 * 209.99481 * 18 16 15 21 21 H 1.48500 * 109.47489 * 329.99796 * 18 16 15 22 22 C 1.51264 * 118.30252 * 51.34963 * 15 14 13 23 23 C 1.52961 * 109.41110 * 214.75283 * 11 10 7 24 24 C 1.38215 * 119.99814 * 179.97438 * 2 1 3 25 25 C 1.50700 * 119.99740 * 359.97438 * 24 2 1 26 26 H 1.09000 * 109.47137 * 270.02393 * 1 2 3 27 27 H 1.09003 * 109.47123 * 30.02461 * 1 2 3 28 28 H 1.09003 * 109.47347 * 150.01648 * 1 2 3 29 29 H 1.08004 * 120.00083 * 0.02562 * 3 2 1 30 30 H 1.07992 * 120.00214 * 180.02562 * 4 3 2 31 31 H 1.07994 * 120.00365 * 180.02562 * 5 4 3 32 32 H 0.96991 * 119.99909 * 245.43979 * 10 7 6 33 33 H 1.08997 * 109.48519 * 303.68320 * 13 11 10 34 34 H 1.09006 * 109.48093 * 63.72105 * 13 11 10 35 35 H 1.09001 * 109.62421 * 185.66306 * 14 13 11 36 36 H 1.08993 * 109.62391 * 65.08917 * 14 13 11 37 37 H 0.97009 * 120.00187 * 180.02562 * 17 16 15 38 38 H 1.09004 * 109.62685 * 188.93146 * 22 15 14 39 39 H 1.09008 * 109.62584 * 68.36483 * 22 15 14 40 40 H 1.08994 * 109.48115 * 296.27606 * 23 11 10 41 41 H 1.08997 * 109.48142 * 56.31483 * 23 11 10 42 42 H 1.08997 * 109.47112 * 85.65574 * 25 24 2 43 43 H 1.08995 * 109.47670 * 325.65343 * 25 24 2 44 44 H 1.09005 * 109.47037 * 205.65178 * 25 24 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1983 1.1973 0.0000 4 6 3.5805 1.1973 0.0005 5 6 4.2717 -0.0001 0.0005 6 6 3.5806 -1.1970 0.0054 7 16 4.4616 -2.7230 0.0128 8 8 5.8407 -2.3905 -0.0687 9 8 3.9102 -3.4995 1.0674 10 7 4.0869 -3.5121 -1.3942 11 6 4.4995 -2.9489 -2.6821 12 1 4.6157 -1.8695 -2.5849 13 6 5.8339 -3.5666 -3.1031 14 6 6.3109 -2.9107 -4.4032 15 6 5.2126 -3.0359 -5.4359 16 6 5.4755 -3.5475 -6.6891 17 7 4.5082 -3.6484 -7.5742 18 14 7.2056 -4.0972 -7.1294 19 1 7.3730 -5.5311 -6.7813 20 1 7.4281 -3.9123 -8.5860 21 1 8.1911 -3.2854 -6.3711 22 6 3.8189 -2.5850 -5.0589 23 6 3.4323 -3.2526 -3.7350 24 6 2.1981 -1.1970 0.0005 25 6 1.4444 -2.5020 0.0017 26 1 -0.3633 0.0004 1.0277 27 1 -0.3633 0.8898 -0.5142 28 1 -0.3634 -0.8901 -0.5136 29 1 1.6583 2.1326 0.0004 30 1 4.1204 2.1326 0.0010 31 1 5.3517 -0.0002 0.0014 32 1 3.5943 -4.3472 -1.3654 33 1 6.5740 -3.4017 -2.3200 34 1 5.7049 -4.6372 -3.2620 35 1 7.2084 -3.4158 -4.7602 36 1 6.5268 -1.8575 -4.2242 37 1 4.6929 -4.0086 -8.4558 38 1 3.1153 -2.8806 -5.8372 39 1 3.8041 -1.5014 -4.9406 40 1 3.3601 -4.3306 -3.8790 41 1 2.4703 -2.8652 -3.3998 42 1 1.1950 -2.7784 -1.0227 43 1 0.5282 -2.3921 0.5817 44 1 2.0652 -3.2797 0.4469 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001261001498.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:28:03 Heat of formation + Delta-G solvation = -71.567919 kcal Electronic energy + Delta-G solvation = -26380.052647 eV Core-core repulsion = 22809.181756 eV Total energy + Delta-G solvation = -3570.870892 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 323.134 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -39.71214 -37.59710 -37.05270 -35.70080 -33.81514 -33.46498 -32.50329 -31.26406 -29.65489 -27.92066 -26.86379 -26.53176 -23.01956 -22.11881 -21.51506 -21.09085 -19.68044 -19.10582 -17.59113 -17.09781 -16.46797 -15.92448 -15.84956 -15.37455 -14.59670 -14.46308 -14.36779 -14.10194 -13.30882 -13.18537 -13.01035 -12.91923 -12.88645 -12.56729 -12.40836 -12.38855 -12.20190 -12.18462 -12.10123 -11.91618 -11.55120 -11.42397 -11.16881 -11.11840 -10.87153 -10.67698 -10.51588 -10.18374 -10.00279 -9.75962 -9.33759 -9.20336 -8.95438 -8.72344 -8.48972 -8.46339 -6.12408 -4.02877 0.53483 0.81186 1.18082 3.13374 3.27423 3.36185 3.38761 3.40514 3.88319 4.37892 4.42168 4.62205 4.66468 4.81234 4.96776 5.07147 5.14789 5.31269 5.37955 5.38532 5.41527 5.50621 5.57942 5.69057 5.81180 5.86646 5.93492 6.03911 6.06883 6.07885 6.21217 6.31567 6.49648 6.59869 6.72621 6.76669 6.87560 6.96641 7.05030 7.12784 7.32697 7.43215 7.63652 7.69844 7.79594 8.35625 8.94323 9.52968 10.97037 Molecular weight = 323.13amu Principal moments of inertia in cm(-1) A = 0.016694 B = 0.004224 C = 0.003916 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1676.817141 B = 6626.971892 C = 7148.689034 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.115 4.115 2 C -0.113 4.113 3 C -0.065 4.065 4 C -0.144 4.144 5 C -0.022 4.022 6 C -0.672 4.672 7 S 2.692 3.308 8 O -0.957 6.957 9 O -0.970 6.970 10 N -1.110 6.110 11 C 0.166 3.834 12 H 0.072 0.928 13 C -0.125 4.125 14 C -0.015 4.015 15 C -0.489 4.489 16 C 0.076 3.924 17 N -0.890 5.890 18 Si 0.888 3.112 19 H -0.278 1.278 20 H -0.291 1.291 21 H -0.266 1.266 22 C 0.011 3.989 23 C -0.111 4.111 24 C 0.024 3.976 25 C -0.169 4.169 26 H 0.070 0.930 27 H 0.067 0.933 28 H 0.072 0.928 29 H 0.127 0.873 30 H 0.131 0.869 31 H 0.143 0.857 32 H 0.414 0.586 33 H 0.049 0.951 34 H 0.057 0.943 35 H 0.033 0.967 36 H 0.019 0.981 37 H 0.264 0.736 38 H 0.060 0.940 39 H 0.004 0.996 40 H 0.057 0.943 41 H 0.035 0.965 42 H 0.090 0.910 43 H 0.083 0.917 44 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.035 6.215 14.678 17.423 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C -0.114 4.114 3 C -0.083 4.083 4 C -0.163 4.163 5 C -0.042 4.042 6 C -0.758 4.758 7 S 2.782 3.218 8 O -0.947 6.947 9 O -0.960 6.960 10 N -0.870 5.870 11 C 0.061 3.939 12 H 0.090 0.910 13 C -0.164 4.164 14 C -0.053 4.053 15 C -0.508 4.508 16 C -0.126 4.126 17 N -0.528 5.528 18 Si 0.716 3.284 19 H -0.204 1.204 20 H -0.217 1.217 21 H -0.191 1.191 22 C -0.027 4.027 23 C -0.150 4.150 24 C 0.022 3.978 25 C -0.225 4.225 26 H 0.089 0.911 27 H 0.086 0.914 28 H 0.091 0.909 29 H 0.145 0.855 30 H 0.149 0.851 31 H 0.160 0.840 32 H 0.248 0.752 33 H 0.067 0.933 34 H 0.076 0.924 35 H 0.051 0.949 36 H 0.038 0.962 37 H 0.074 0.926 38 H 0.079 0.921 39 H 0.023 0.977 40 H 0.076 0.924 41 H 0.054 0.946 42 H 0.109 0.891 43 H 0.102 0.898 44 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges -6.432 6.042 15.151 17.534 hybrid contribution 0.209 0.009 -0.640 0.673 sum -6.224 6.051 14.511 16.909 Atomic orbital electron populations 1.20826 0.90659 1.03307 1.02379 1.19879 0.96409 0.92664 1.02407 1.21303 0.94442 0.97594 0.94932 1.21230 0.94398 0.98225 1.02460 1.20979 1.00522 0.91043 0.91631 1.30829 1.05656 1.20590 1.18734 1.01891 0.73796 0.73475 0.72609 1.93570 1.30425 1.84504 1.86218 1.93521 1.79630 1.68971 1.53889 1.55682 1.73556 1.35844 1.21956 1.20837 0.96135 0.96351 0.80602 0.91004 1.22092 0.94961 1.00531 0.98858 1.19743 0.96472 0.96150 0.92981 1.20051 0.93411 1.41028 0.96354 1.24836 0.96914 0.95064 0.95809 1.69831 1.31959 1.45253 1.05733 0.86667 0.85336 0.79324 0.77092 1.20388 1.21707 1.19090 1.19367 0.97061 0.94199 0.92044 1.21937 0.94639 1.01450 0.97004 1.19365 0.91299 0.95729 0.91364 1.21577 1.02136 0.94600 1.04190 0.91107 0.91355 0.90892 0.85470 0.85132 0.83955 0.75158 0.93258 0.92426 0.94874 0.96244 0.92602 0.92110 0.97720 0.92383 0.94610 0.89119 0.89818 0.88609 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.97 9.21 36.01 0.33 -0.64 16 2 C -0.11 -1.30 5.88 -104.62 -0.62 -1.91 16 3 C -0.06 -0.69 9.70 -39.58 -0.38 -1.08 16 4 C -0.14 -1.65 10.05 -39.58 -0.40 -2.05 16 5 C -0.02 -0.30 9.55 -39.58 -0.38 -0.68 16 6 C -0.67 -9.67 5.76 -39.58 -0.23 -9.90 16 7 S 2.69 41.89 4.88 -107.50 -0.52 41.37 16 8 O -0.96 -17.38 16.12 -57.17 -0.92 -18.31 16 9 O -0.97 -16.05 15.57 -57.17 -0.89 -16.94 16 10 N -1.11 -16.69 5.18 -4.93 -0.03 -16.72 16 11 C 0.17 3.01 2.54 -67.97 -0.17 2.84 16 12 H 0.07 1.31 7.87 -51.93 -0.41 0.91 16 13 C -0.12 -2.53 5.54 -26.63 -0.15 -2.67 16 14 C -0.02 -0.35 5.59 -27.48 -0.15 -0.50 16 15 C -0.49 -12.47 5.51 -98.92 -0.55 -13.02 16 16 C 0.08 2.04 5.46 -17.82 -0.10 1.94 16 17 N -0.89 -24.96 12.73 55.43 0.71 -24.25 16 18 Si 0.89 20.85 27.27 -169.99 -4.64 16.22 16 19 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 20 H -0.29 -6.84 7.11 56.52 0.40 -6.44 16 21 H -0.27 -6.10 6.46 56.52 0.37 -5.73 16 22 C 0.01 0.27 5.97 -27.49 -0.16 0.11 16 23 C -0.11 -2.14 5.46 -26.63 -0.15 -2.28 16 24 C 0.02 0.31 5.88 -104.62 -0.61 -0.30 16 25 C -0.17 -1.90 8.42 36.01 0.30 -1.60 16 26 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 27 H 0.07 0.49 8.09 -51.93 -0.42 0.07 16 28 H 0.07 0.58 6.78 -51.93 -0.35 0.23 16 29 H 0.13 0.99 8.06 -52.48 -0.42 0.57 16 30 H 0.13 1.14 8.06 -52.49 -0.42 0.71 16 31 H 0.14 1.83 7.34 -52.49 -0.39 1.44 16 32 H 0.41 5.26 8.83 -34.47 -0.30 4.96 16 33 H 0.05 0.96 7.53 -51.93 -0.39 0.57 16 34 H 0.06 1.15 8.14 -51.93 -0.42 0.73 16 35 H 0.03 0.76 4.78 -51.93 -0.25 0.51 16 36 H 0.02 0.44 8.14 -51.93 -0.42 0.01 16 37 H 0.26 7.06 8.31 -40.82 -0.34 6.72 16 38 H 0.06 1.58 7.07 -51.93 -0.37 1.21 16 39 H 0.00 0.10 8.14 -51.92 -0.42 -0.32 16 40 H 0.06 1.14 8.14 -51.93 -0.42 0.72 16 41 H 0.04 0.61 8.14 -51.93 -0.42 0.18 16 42 H 0.09 0.93 8.14 -51.93 -0.42 0.51 16 43 H 0.08 0.76 6.95 -51.93 -0.36 0.40 16 44 H 0.10 1.17 4.80 -51.93 -0.25 0.92 16 LS Contribution 354.41 15.07 5.34 5.34 Total: -1.00 -31.30 354.41 -10.82 -42.13 By element: Atomic # 1 Polarization: 9.38 SS G_CDS: -6.46 Total: 2.92 kcal Atomic # 6 Polarization: -28.35 SS G_CDS: -3.41 Total: -31.76 kcal Atomic # 7 Polarization: -41.65 SS G_CDS: 0.68 Total: -40.97 kcal Atomic # 8 Polarization: -33.43 SS G_CDS: -1.81 Total: -35.24 kcal Atomic # 14 Polarization: 20.85 SS G_CDS: -4.64 Total: 16.22 kcal Atomic # 16 Polarization: 41.89 SS G_CDS: -0.52 Total: 41.37 kcal Total LS contribution 5.34 Total: 5.34 kcal Total: -31.30 -10.82 -42.13 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001261001498.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -29.440 kcal (2) G-P(sol) polarization free energy of solvation -31.305 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.745 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.823 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.127 kcal (6) G-S(sol) free energy of system = (1) + (5) -71.568 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds