Wall clock time and date at job start Tue Mar 31 2020 14:28:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.38251 * 120.00235 * 2 1 4 4 C 1.38217 * 120.00495 * 179.97438 * 3 2 1 5 5 C 1.38259 * 119.99560 * 0.02562 * 4 3 2 6 6 C 1.38218 * 120.00027 * 359.74343 * 5 4 3 7 7 S 1.76200 * 120.00042 * 180.27765 * 6 5 4 8 8 O 1.42093 * 106.40286 * 356.59627 * 7 6 5 9 9 O 1.42102 * 106.40031 * 129.52043 * 7 6 5 10 10 N 1.65608 * 107.21617 * 243.05494 * 7 6 5 11 11 C 1.46498 * 119.99602 * 65.44301 * 10 7 6 12 12 H 1.09000 * 109.41479 * 334.61114 * 11 10 7 13 13 C 1.52958 * 109.41709 * 94.39903 * 11 10 7 14 14 C 1.53231 * 109.40709 * 183.70121 * 13 11 10 15 15 C 1.51270 * 108.53301 * 305.37355 * 14 13 11 16 16 C 1.37881 * 120.84702 * 231.32018 * 15 14 13 17 17 N 1.31510 * 119.99675 * 180.02562 * 16 15 14 18 18 Si 1.86794 * 120.00061 * 0.02836 * 16 15 14 19 19 H 1.48505 * 109.47049 * 89.99965 * 18 16 15 20 20 H 1.48501 * 109.47351 * 209.99481 * 18 16 15 21 21 H 1.48500 * 109.47489 * 329.99796 * 18 16 15 22 22 C 1.51264 * 118.30252 * 51.34963 * 15 14 13 23 23 C 1.52961 * 109.41110 * 214.75283 * 11 10 7 24 24 C 1.38215 * 119.99814 * 179.97438 * 2 1 3 25 25 C 1.50700 * 119.99740 * 359.97438 * 24 2 1 26 26 H 1.09000 * 109.47137 * 270.02393 * 1 2 3 27 27 H 1.09003 * 109.47123 * 30.02461 * 1 2 3 28 28 H 1.09003 * 109.47347 * 150.01648 * 1 2 3 29 29 H 1.08004 * 120.00083 * 0.02562 * 3 2 1 30 30 H 1.07992 * 120.00214 * 180.02562 * 4 3 2 31 31 H 1.07994 * 120.00365 * 180.02562 * 5 4 3 32 32 H 0.96991 * 119.99909 * 245.43979 * 10 7 6 33 33 H 1.08997 * 109.48519 * 303.68320 * 13 11 10 34 34 H 1.09006 * 109.48093 * 63.72105 * 13 11 10 35 35 H 1.09001 * 109.62421 * 185.66306 * 14 13 11 36 36 H 1.08993 * 109.62391 * 65.08917 * 14 13 11 37 37 H 0.97009 * 120.00187 * 180.02562 * 17 16 15 38 38 H 1.09004 * 109.62685 * 188.93146 * 22 15 14 39 39 H 1.09008 * 109.62584 * 68.36483 * 22 15 14 40 40 H 1.08994 * 109.48115 * 296.27606 * 23 11 10 41 41 H 1.08997 * 109.48142 * 56.31483 * 23 11 10 42 42 H 1.08997 * 109.47112 * 85.65574 * 25 24 2 43 43 H 1.08995 * 109.47670 * 325.65343 * 25 24 2 44 44 H 1.09005 * 109.47037 * 205.65178 * 25 24 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1983 1.1973 0.0000 4 6 3.5805 1.1973 0.0005 5 6 4.2717 -0.0001 0.0005 6 6 3.5806 -1.1970 0.0054 7 16 4.4616 -2.7230 0.0128 8 8 5.8407 -2.3905 -0.0687 9 8 3.9102 -3.4995 1.0674 10 7 4.0869 -3.5121 -1.3942 11 6 4.4995 -2.9489 -2.6821 12 1 4.6157 -1.8695 -2.5849 13 6 5.8339 -3.5666 -3.1031 14 6 6.3109 -2.9107 -4.4032 15 6 5.2126 -3.0359 -5.4359 16 6 5.4755 -3.5475 -6.6891 17 7 4.5082 -3.6484 -7.5742 18 14 7.2056 -4.0972 -7.1294 19 1 7.3730 -5.5311 -6.7813 20 1 7.4281 -3.9123 -8.5860 21 1 8.1911 -3.2854 -6.3711 22 6 3.8189 -2.5850 -5.0589 23 6 3.4323 -3.2526 -3.7350 24 6 2.1981 -1.1970 0.0005 25 6 1.4444 -2.5020 0.0017 26 1 -0.3633 0.0004 1.0277 27 1 -0.3633 0.8898 -0.5142 28 1 -0.3634 -0.8901 -0.5136 29 1 1.6583 2.1326 0.0004 30 1 4.1204 2.1326 0.0010 31 1 5.3517 -0.0002 0.0014 32 1 3.5943 -4.3472 -1.3654 33 1 6.5740 -3.4017 -2.3200 34 1 5.7049 -4.6372 -3.2620 35 1 7.2084 -3.4158 -4.7602 36 1 6.5268 -1.8575 -4.2242 37 1 4.6929 -4.0086 -8.4558 38 1 3.1153 -2.8806 -5.8372 39 1 3.8041 -1.5014 -4.9406 40 1 3.3601 -4.3306 -3.8790 41 1 2.4703 -2.8652 -3.3998 42 1 1.1950 -2.7784 -1.0227 43 1 0.5282 -2.3921 0.5817 44 1 2.0652 -3.2797 0.4469 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001261001498.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:28:02 Heat of formation + Delta-G solvation = -91.097311 kcal Electronic energy + Delta-G solvation = -26380.899505 eV Core-core repulsion = 22809.181756 eV Total energy + Delta-G solvation = -3571.717750 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 323.134 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -40.58676 -39.17587 -38.37326 -37.00566 -35.45449 -34.37169 -33.41164 -33.00712 -31.40300 -28.81348 -28.52255 -27.33812 -23.95970 -23.90665 -23.25170 -21.95807 -21.30439 -20.38479 -18.85839 -18.30004 -17.84319 -17.40981 -16.76647 -16.58209 -16.36540 -15.80116 -15.32066 -15.00240 -14.96432 -14.59392 -14.22693 -14.16123 -14.02155 -13.97871 -13.75509 -13.63359 -13.37075 -13.23532 -13.10436 -13.08604 -12.95732 -12.80807 -12.67872 -12.63574 -12.36602 -11.98465 -11.87099 -11.79125 -11.62837 -11.45958 -10.89647 -10.72384 -10.51147 -10.24254 -10.11987 -9.59424 -8.14514 -6.07366 -0.63879 -0.17001 0.29057 1.39680 1.44281 1.51969 1.95148 2.43015 2.43661 2.72318 3.14025 3.37566 3.71452 3.81343 3.91251 3.97409 4.15518 4.21479 4.29841 4.42932 4.49318 4.54238 4.58275 4.67816 4.79172 4.79858 4.84958 4.89827 4.98626 5.03287 5.12012 5.12817 5.15735 5.27336 5.29170 5.31721 5.34075 5.48431 5.48801 5.62114 5.68842 5.81264 5.86855 5.92176 6.16565 6.38896 6.98836 7.50609 8.95917 Molecular weight = 323.13amu Principal moments of inertia in cm(-1) A = 0.016694 B = 0.004224 C = 0.003916 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1676.817141 B = 6626.971892 C = 7148.689034 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.116 4.116 2 C -0.119 4.119 3 C -0.064 4.064 4 C -0.147 4.147 5 C -0.047 4.047 6 C -0.687 4.687 7 S 2.706 3.294 8 O -0.988 6.988 9 O -0.982 6.982 10 N -1.102 6.102 11 C 0.177 3.823 12 H 0.072 0.928 13 C -0.124 4.124 14 C -0.019 4.019 15 C -0.497 4.497 16 C 0.026 3.974 17 N -0.928 5.928 18 Si 0.934 3.066 19 H -0.274 1.274 20 H -0.293 1.293 21 H -0.257 1.257 22 C 0.007 3.993 23 C -0.099 4.099 24 C 0.007 3.993 25 C -0.172 4.172 26 H 0.084 0.916 27 H 0.082 0.918 28 H 0.076 0.924 29 H 0.160 0.840 30 H 0.156 0.844 31 H 0.139 0.861 32 H 0.425 0.575 33 H 0.055 0.945 34 H 0.058 0.942 35 H 0.031 0.969 36 H 0.020 0.980 37 H 0.262 0.738 38 H 0.032 0.968 39 H 0.001 0.999 40 H 0.054 0.946 41 H 0.063 0.937 42 H 0.099 0.901 43 H 0.104 0.896 44 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.070 7.235 16.151 19.450 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C -0.120 4.120 3 C -0.082 4.082 4 C -0.166 4.166 5 C -0.066 4.066 6 C -0.776 4.776 7 S 2.799 3.201 8 O -0.978 6.978 9 O -0.972 6.972 10 N -0.862 5.862 11 C 0.071 3.929 12 H 0.090 0.910 13 C -0.164 4.164 14 C -0.058 4.058 15 C -0.516 4.516 16 C -0.173 4.173 17 N -0.568 5.568 18 Si 0.761 3.239 19 H -0.200 1.200 20 H -0.220 1.220 21 H -0.182 1.182 22 C -0.031 4.031 23 C -0.139 4.139 24 C 0.005 3.995 25 C -0.229 4.229 26 H 0.103 0.897 27 H 0.101 0.899 28 H 0.095 0.905 29 H 0.178 0.822 30 H 0.174 0.826 31 H 0.157 0.843 32 H 0.262 0.738 33 H 0.074 0.926 34 H 0.076 0.924 35 H 0.050 0.950 36 H 0.039 0.961 37 H 0.071 0.929 38 H 0.050 0.950 39 H 0.020 0.980 40 H 0.073 0.927 41 H 0.081 0.919 42 H 0.118 0.882 43 H 0.123 0.877 44 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges -7.447 7.021 16.645 19.540 hybrid contribution 0.452 -0.188 -1.033 1.143 sum -6.995 6.832 15.612 18.422 Atomic orbital electron populations 1.20914 0.88440 1.04288 1.03567 1.20313 0.98137 0.92294 1.01275 1.21766 0.94326 0.98837 0.93241 1.21586 0.95133 0.98426 1.01443 1.21158 1.00729 0.91827 0.92936 1.30529 1.06371 1.19609 1.21110 1.01229 0.73113 0.73633 0.72167 1.93525 1.32703 1.85044 1.86543 1.93505 1.79700 1.69860 1.54170 1.55381 1.73624 1.36598 1.20622 1.20502 0.94664 0.96351 0.81383 0.90976 1.22044 0.96320 1.00426 0.97611 1.19774 0.95748 0.96521 0.93721 1.20627 0.94866 1.39471 0.96655 1.25513 0.99694 0.95929 0.96116 1.69950 1.33583 1.47212 1.06093 0.85903 0.82185 0.79151 0.76652 1.19986 1.21989 1.18159 1.19331 0.95876 0.94284 0.93592 1.21729 0.96270 1.00827 0.95057 1.19669 0.90925 0.97201 0.91666 1.21651 1.02657 0.93499 1.05047 0.89697 0.89873 0.90506 0.82199 0.82608 0.84307 0.73805 0.92601 0.92353 0.95031 0.96119 0.92872 0.94961 0.98016 0.92701 0.91880 0.88216 0.87700 0.89824 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.53 9.21 71.24 0.66 -0.88 16 2 C -0.12 -2.39 5.88 -19.87 -0.12 -2.51 16 3 C -0.06 -1.16 9.70 22.27 0.22 -0.94 16 4 C -0.15 -3.02 10.05 22.27 0.22 -2.80 16 5 C -0.05 -1.23 9.55 22.27 0.21 -1.01 16 6 C -0.69 -19.03 5.76 22.27 0.13 -18.90 16 7 S 2.71 82.37 4.88 -56.49 -0.28 82.10 16 8 O -0.99 -35.72 16.12 -128.00 -2.06 -37.79 16 9 O -0.98 -31.84 15.57 -128.00 -1.99 -33.83 16 10 N -1.10 -31.73 5.18 -169.50 -0.88 -32.60 16 11 C 0.18 6.22 2.54 44.96 0.11 6.34 16 12 H 0.07 2.56 7.87 -2.39 -0.02 2.54 16 13 C -0.12 -4.91 5.54 30.66 0.17 -4.74 16 14 C -0.02 -0.88 5.59 30.11 0.17 -0.71 16 15 C -0.50 -25.37 5.51 -16.17 -0.09 -25.46 16 16 C 0.03 1.39 5.46 84.66 0.46 1.85 16 17 N -0.93 -53.18 12.73 21.45 0.27 -52.91 16 18 Si 0.93 42.91 27.27 68.60 1.87 44.78 16 19 H -0.27 -12.32 7.11 99.48 0.71 -11.61 16 20 H -0.29 -13.48 7.11 99.48 0.71 -12.77 16 21 H -0.26 -11.31 6.46 99.48 0.64 -10.67 16 22 C 0.01 0.35 5.97 30.10 0.18 0.53 16 23 C -0.10 -3.72 5.46 30.66 0.17 -3.55 16 24 C 0.01 0.16 5.88 -19.86 -0.12 0.05 16 25 C -0.17 -3.52 8.42 71.24 0.60 -2.92 16 26 H 0.08 0.91 8.14 -2.39 -0.02 0.89 16 27 H 0.08 0.87 8.09 -2.39 -0.02 0.85 16 28 H 0.08 0.97 6.78 -2.39 -0.02 0.95 16 29 H 0.16 1.79 8.06 -2.91 -0.02 1.76 16 30 H 0.16 2.27 8.06 -2.91 -0.02 2.25 16 31 H 0.14 3.56 7.34 -2.91 -0.02 3.54 16 32 H 0.43 10.17 8.83 -96.75 -0.85 9.32 16 33 H 0.06 2.13 7.53 -2.39 -0.02 2.11 16 34 H 0.06 2.27 8.14 -2.38 -0.02 2.25 16 35 H 0.03 1.41 4.78 -2.39 -0.01 1.40 16 36 H 0.02 0.92 8.14 -2.39 -0.02 0.90 16 37 H 0.26 14.37 8.31 -92.70 -0.77 13.60 16 38 H 0.03 1.69 7.07 -2.38 -0.02 1.68 16 39 H 0.00 0.07 8.14 -2.38 -0.02 0.05 16 40 H 0.05 2.09 8.14 -2.39 -0.02 2.07 16 41 H 0.06 2.02 8.14 -2.39 -0.02 2.00 16 42 H 0.10 1.81 8.14 -2.39 -0.02 1.79 16 43 H 0.10 1.63 6.95 -2.39 -0.02 1.61 16 44 H 0.08 1.92 4.80 -2.38 -0.01 1.91 16 Total: -1.00 -67.50 354.41 0.01 -67.49 By element: Atomic # 1 Polarization: 18.33 SS G_CDS: 0.10 Total: 18.42 kcal Atomic # 6 Polarization: -58.64 SS G_CDS: 2.98 Total: -55.66 kcal Atomic # 7 Polarization: -84.91 SS G_CDS: -0.60 Total: -85.52 kcal Atomic # 8 Polarization: -67.56 SS G_CDS: -4.06 Total: -71.62 kcal Atomic # 14 Polarization: 42.91 SS G_CDS: 1.87 Total: 44.78 kcal Atomic # 16 Polarization: 82.37 SS G_CDS: -0.28 Total: 82.10 kcal Total: -67.50 0.01 -67.49 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001261001498.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -23.608 kcal (2) G-P(sol) polarization free energy of solvation -67.499 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -91.107 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.010 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.489 kcal (6) G-S(sol) free energy of system = (1) + (5) -91.097 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds