Wall clock time and date at job start Tue Mar 31 2020 14:28:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.38245 * 119.99967 * 2 1 4 4 C 1.38217 * 120.00089 * 180.02562 * 3 2 1 5 5 C 1.38256 * 119.99651 * 359.97438 * 4 3 2 6 6 C 1.38210 * 120.00444 * 359.96088 * 5 4 3 7 7 S 1.76197 * 120.00155 * 180.02562 * 6 5 4 8 8 O 1.42099 * 106.40194 * 131.98040 * 7 6 5 9 9 O 1.42095 * 106.40492 * 359.06157 * 7 6 5 10 10 N 1.65593 * 107.21908 * 245.51872 * 7 6 5 11 11 C 1.46508 * 119.99925 * 66.05731 * 10 7 6 12 12 H 1.08997 * 109.40987 * 25.19001 * 11 10 7 13 13 C 1.52963 * 109.41409 * 145.04688 * 11 10 7 14 14 C 1.53219 * 109.41506 * 183.62652 * 13 11 10 15 15 C 1.51277 * 108.53778 * 305.39354 * 14 13 11 16 16 C 1.37875 * 120.84174 * 231.32354 * 15 14 13 17 17 N 1.31517 * 120.00285 * 192.51859 * 16 15 14 18 18 Si 1.86799 * 120.00041 * 12.52009 * 16 15 14 19 19 H 1.48507 * 109.46989 * 5.55979 * 18 16 15 20 20 H 1.48500 * 109.47309 * 125.56077 * 18 16 15 21 21 H 1.48499 * 109.47315 * 245.56412 * 18 16 15 22 22 C 1.51269 * 118.30981 * 51.32738 * 15 14 13 23 23 C 1.52962 * 109.35635 * 265.36758 * 11 10 7 24 24 C 1.38219 * 119.99768 * 180.20969 * 2 1 3 25 25 C 1.50697 * 120.00225 * 0.02562 * 24 2 1 26 26 H 1.09004 * 109.47073 * 90.00225 * 1 2 3 27 27 H 1.09005 * 109.47247 * 209.99489 * 1 2 3 28 28 H 1.08998 * 109.47284 * 329.99842 * 1 2 3 29 29 H 1.07997 * 120.00322 * 0.02562 * 3 2 1 30 30 H 1.08002 * 120.00341 * 179.97438 * 4 3 2 31 31 H 1.08003 * 119.99675 * 179.97438 * 5 4 3 32 32 H 0.97003 * 120.00480 * 246.05819 * 10 7 6 33 33 H 1.08992 * 109.48139 * 303.62125 * 13 11 10 34 34 H 1.09004 * 109.47856 * 63.64419 * 13 11 10 35 35 H 1.08999 * 109.62852 * 65.09611 * 14 13 11 36 36 H 1.09006 * 109.62849 * 185.66541 * 14 13 11 37 37 H 0.96997 * 120.00279 * 180.02562 * 17 16 15 38 38 H 1.08991 * 109.62967 * 188.94848 * 22 15 14 39 39 H 1.09001 * 109.62656 * 68.37187 * 22 15 14 40 40 H 1.08998 * 109.48029 * 296.31177 * 23 11 10 41 41 H 1.08999 * 109.48087 * 56.33523 * 23 11 10 42 42 H 1.08999 * 109.46918 * 273.14384 * 25 24 2 43 43 H 1.09003 * 109.47097 * 33.14140 * 25 24 2 44 44 H 1.08996 * 109.47049 * 153.14147 * 25 24 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1982 1.1972 0.0000 4 6 3.5804 1.1973 -0.0005 5 6 4.2716 -0.0001 -0.0005 6 6 3.5806 -1.1970 0.0008 7 16 4.4616 -2.7229 0.0015 8 8 3.8732 -3.5255 1.0158 9 8 5.8426 -2.3890 -0.0219 10 7 4.1382 -3.4763 -1.4372 11 6 4.6082 -2.8880 -2.6940 12 1 5.4798 -2.2637 -2.4981 13 6 4.9911 -4.0050 -3.6664 14 6 5.5672 -3.3907 -4.9463 15 6 4.5655 -2.4002 -5.4976 16 6 4.1644 -2.4598 -6.8154 17 7 3.4932 -1.4601 -7.3443 18 14 4.5743 -3.9604 -7.8496 19 1 5.2110 -4.9930 -6.9930 20 1 3.3279 -4.5087 -8.4421 21 1 5.5098 -3.5726 -8.9356 22 6 4.0153 -1.3428 -4.5664 23 6 3.4952 -2.0316 -3.3003 24 6 2.1980 -1.1970 -0.0044 25 6 1.4445 -2.5021 -0.0097 26 1 -0.3633 0.0000 -1.0277 27 1 -0.3634 -0.8901 0.5138 28 1 -0.3634 0.8899 0.5138 29 1 1.6583 2.1326 0.0004 30 1 4.1204 2.1326 -0.0010 31 1 5.3516 -0.0001 -0.0014 32 1 3.6376 -4.3072 -1.4480 33 1 5.7386 -4.6493 -3.2038 34 1 4.1063 -4.5927 -3.9115 35 1 6.5014 -2.8777 -4.7179 36 1 5.7478 -4.1762 -5.6804 37 1 3.2107 -1.5022 -8.2713 38 1 3.1987 -0.8125 -5.0562 39 1 4.8057 -0.6402 -4.3024 40 1 2.6459 -2.6658 -3.5542 41 1 3.1826 -1.2774 -2.5781 42 1 1.2137 -2.7925 1.0152 43 1 0.5179 -2.3843 -0.5715 44 1 2.0570 -3.2733 -0.4768 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001261001499.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:28:06 Heat of formation + Delta-G solvation = -88.201842 kcal Electronic energy + Delta-G solvation = -26624.580022 eV Core-core repulsion = 23052.987829 eV Total energy + Delta-G solvation = -3571.592193 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 323.134 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -40.60340 -39.16154 -38.36304 -37.00489 -35.47137 -34.37511 -33.41726 -33.03238 -31.40177 -28.84882 -28.50208 -27.33953 -23.98669 -23.88948 -23.20183 -21.95338 -21.35506 -20.38955 -18.84887 -18.29208 -17.90201 -17.39509 -16.74798 -16.56972 -16.36695 -15.79694 -15.33057 -15.02749 -14.92566 -14.72049 -14.21842 -14.05529 -14.01917 -14.00017 -13.68934 -13.58194 -13.34565 -13.23360 -13.10400 -13.04729 -12.98701 -12.90449 -12.81550 -12.67444 -12.42887 -11.99599 -11.87996 -11.78856 -11.65956 -11.22533 -10.94673 -10.75559 -10.44403 -10.23571 -10.04953 -9.58022 -8.14857 -6.06235 -0.63389 -0.14840 0.30574 1.41521 1.46926 1.54631 1.93789 2.44612 2.45312 2.74423 3.12761 3.35906 3.70964 3.80321 3.91710 3.97975 4.12991 4.24223 4.29002 4.43374 4.49594 4.53675 4.55778 4.67770 4.77642 4.79382 4.84094 4.89267 4.97688 5.04679 5.09923 5.12033 5.14996 5.26048 5.28284 5.34404 5.34725 5.48725 5.51064 5.63399 5.66208 5.81981 5.85908 5.92943 6.15577 6.39365 6.98716 7.50947 8.96186 Molecular weight = 323.13amu Principal moments of inertia in cm(-1) A = 0.014926 B = 0.004729 C = 0.004142 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1875.428693 B = 5919.053578 C = 6758.177779 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.116 4.116 2 C -0.118 4.118 3 C -0.065 4.065 4 C -0.147 4.147 5 C -0.045 4.045 6 C -0.684 4.684 7 S 2.707 3.293 8 O -0.979 6.979 9 O -0.993 6.993 10 N -1.102 6.102 11 C 0.168 3.832 12 H 0.072 0.928 13 C -0.107 4.107 14 C -0.028 4.028 15 C -0.498 4.498 16 C 0.023 3.977 17 N -0.929 5.929 18 Si 0.931 3.069 19 H -0.233 1.233 20 H -0.289 1.289 21 H -0.288 1.288 22 C 0.011 3.989 23 C -0.110 4.110 24 C 0.007 3.993 25 C -0.147 4.147 26 H 0.076 0.924 27 H 0.080 0.920 28 H 0.085 0.915 29 H 0.158 0.842 30 H 0.154 0.846 31 H 0.138 0.862 32 H 0.426 0.574 33 H 0.065 0.935 34 H 0.065 0.935 35 H 0.020 0.980 36 H 0.048 0.952 37 H 0.261 0.739 38 H 0.023 0.977 39 H -0.006 1.006 40 H 0.055 0.945 41 H 0.047 0.953 42 H 0.099 0.901 43 H 0.101 0.899 44 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.665 0.908 15.265 16.307 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C -0.119 4.119 3 C -0.083 4.083 4 C -0.166 4.166 5 C -0.065 4.065 6 C -0.773 4.773 7 S 2.799 3.201 8 O -0.969 6.969 9 O -0.983 6.983 10 N -0.863 5.863 11 C 0.061 3.939 12 H 0.090 0.910 13 C -0.146 4.146 14 C -0.066 4.066 15 C -0.517 4.517 16 C -0.175 4.175 17 N -0.569 5.569 18 Si 0.758 3.242 19 H -0.156 1.156 20 H -0.216 1.216 21 H -0.214 1.214 22 C -0.027 4.027 23 C -0.149 4.149 24 C 0.006 3.994 25 C -0.203 4.203 26 H 0.095 0.905 27 H 0.099 0.901 28 H 0.104 0.896 29 H 0.176 0.824 30 H 0.172 0.828 31 H 0.156 0.844 32 H 0.263 0.737 33 H 0.083 0.917 34 H 0.084 0.916 35 H 0.038 0.962 36 H 0.066 0.934 37 H 0.070 0.930 38 H 0.041 0.959 39 H 0.012 0.988 40 H 0.074 0.926 41 H 0.066 0.934 42 H 0.118 0.882 43 H 0.120 0.880 44 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -5.099 0.784 15.802 16.623 hybrid contribution -0.339 -0.011 -1.325 1.367 sum -5.439 0.773 14.478 15.485 Atomic orbital electron populations 1.20910 0.88557 1.04429 1.03309 1.20271 0.98051 0.92303 1.01280 1.21736 0.94358 0.98810 0.93385 1.21563 0.95116 0.98457 1.01452 1.21112 1.00625 0.91833 0.92902 1.30546 1.06284 1.19686 1.20755 1.01165 0.73043 0.73608 0.72240 1.93552 1.78929 1.68290 1.56164 1.93514 1.32893 1.85134 1.86736 1.55429 1.72436 1.37032 1.21435 1.20628 0.95915 0.95093 0.82215 0.90962 1.21770 1.00884 0.96400 0.95584 1.19968 0.95701 0.96024 0.94944 1.20611 1.23591 1.12909 0.94563 1.25612 0.95307 0.98224 0.98396 1.70047 1.40860 1.31942 1.14057 0.85904 0.77632 0.81997 0.78684 1.15640 1.21609 1.21447 1.19270 0.95733 0.94871 0.92820 1.21943 0.97744 0.98100 0.97150 1.19622 0.90965 0.97052 0.91774 1.21352 1.01785 0.92433 1.04769 0.90533 0.90119 0.89577 0.82429 0.82817 0.84410 0.73720 0.91664 0.91602 0.96197 0.93418 0.92956 0.95871 0.98800 0.92620 0.93398 0.88225 0.87994 0.91816 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.79 9.20 71.24 0.66 -1.14 16 2 C -0.12 -2.62 5.88 -19.87 -0.12 -2.74 16 3 C -0.07 -1.35 9.70 22.27 0.22 -1.13 16 4 C -0.15 -3.38 10.05 22.27 0.22 -3.16 16 5 C -0.05 -1.26 9.55 22.27 0.21 -1.05 16 6 C -0.68 -19.90 4.76 22.27 0.11 -19.79 16 7 S 2.71 83.77 4.92 -56.49 -0.28 83.50 16 8 O -0.98 -31.74 16.38 -128.00 -2.10 -33.83 16 9 O -0.99 -36.32 16.26 -128.00 -2.08 -38.40 16 10 N -1.10 -31.90 4.41 -169.48 -0.75 -32.65 16 11 C 0.17 5.92 2.70 44.96 0.12 6.04 16 12 H 0.07 2.73 7.46 -2.39 -0.02 2.71 16 13 C -0.11 -3.84 5.46 30.65 0.17 -3.67 16 14 C -0.03 -1.21 5.66 30.10 0.17 -1.04 16 15 C -0.50 -25.15 5.47 -16.17 -0.09 -25.23 16 16 C 0.02 1.22 5.44 84.65 0.46 1.68 16 17 N -0.93 -53.50 12.84 21.45 0.28 -53.23 16 18 Si 0.93 41.13 27.92 68.60 1.92 43.05 16 19 H -0.23 -9.30 5.63 99.48 0.56 -8.74 16 20 H -0.29 -12.82 7.11 99.48 0.71 -12.12 16 21 H -0.29 -12.85 7.11 99.48 0.71 -12.14 16 22 C 0.01 0.55 5.92 30.11 0.18 0.73 16 23 C -0.11 -4.27 5.54 30.66 0.17 -4.10 16 24 C 0.01 0.19 5.47 -19.86 -0.11 0.08 16 25 C -0.15 -3.22 7.92 71.23 0.56 -2.65 16 26 H 0.08 1.19 8.14 -2.39 -0.02 1.17 16 27 H 0.08 1.09 6.77 -2.38 -0.02 1.07 16 28 H 0.09 1.00 8.09 -2.39 -0.02 0.98 16 29 H 0.16 2.20 8.06 -2.91 -0.02 2.18 16 30 H 0.15 2.65 8.06 -2.91 -0.02 2.62 16 31 H 0.14 3.78 7.33 -2.91 -0.02 3.76 16 32 H 0.43 10.02 8.38 -96.74 -0.81 9.21 16 33 H 0.06 2.05 8.14 -2.39 -0.02 2.03 16 34 H 0.07 2.26 8.14 -2.38 -0.02 2.24 16 35 H 0.02 0.85 8.14 -2.39 -0.02 0.83 16 36 H 0.05 2.00 4.40 -2.38 -0.01 1.99 16 37 H 0.26 14.32 8.31 -92.71 -0.77 13.55 16 38 H 0.02 1.24 7.22 -2.39 -0.02 1.23 16 39 H -0.01 -0.32 8.14 -2.39 -0.02 -0.34 16 40 H 0.06 2.15 8.14 -2.39 -0.02 2.14 16 41 H 0.05 1.73 6.51 -2.39 -0.02 1.72 16 42 H 0.10 1.99 8.14 -2.39 -0.02 1.97 16 43 H 0.10 1.80 6.89 -2.39 -0.02 1.79 16 44 H 0.06 1.43 4.89 -2.39 -0.01 1.42 16 Total: -1.00 -67.49 350.65 -0.02 -67.51 By element: Atomic # 1 Polarization: 21.19 SS G_CDS: 0.06 Total: 21.26 kcal Atomic # 6 Polarization: -60.12 SS G_CDS: 2.93 Total: -57.19 kcal Atomic # 7 Polarization: -85.41 SS G_CDS: -0.47 Total: -85.88 kcal Atomic # 8 Polarization: -68.06 SS G_CDS: -4.18 Total: -72.24 kcal Atomic # 14 Polarization: 41.13 SS G_CDS: 1.92 Total: 43.05 kcal Atomic # 16 Polarization: 83.77 SS G_CDS: -0.28 Total: 83.50 kcal Total: -67.49 -0.02 -67.51 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001261001499.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -20.697 kcal (2) G-P(sol) polarization free energy of solvation -67.487 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -88.184 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.018 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.505 kcal (6) G-S(sol) free energy of system = (1) + (5) -88.202 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds