Wall clock time and date at job start Tue Mar 31 2020 14:14:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.38258 * 120.00083 * 2 1 4 4 C 1.38216 * 120.00364 * 180.02562 * 3 2 1 5 5 C 1.38254 * 119.99725 * 359.97438 * 4 3 2 6 6 C 1.38218 * 120.00084 * 359.97438 * 5 4 3 7 7 S 1.76197 * 119.99963 * 179.97438 * 6 5 4 8 8 O 1.42102 * 106.40330 * 1.55474 * 7 6 5 9 9 O 1.42098 * 106.40140 * 228.63114 * 7 6 5 10 10 N 1.65599 * 107.21790 * 115.08986 * 7 6 5 11 11 C 1.46501 * 120.00004 * 291.60706 * 10 7 6 12 12 C 1.50707 * 110.01717 * 59.65724 * 11 10 7 13 13 H 1.07993 * 119.99710 * 244.57521 * 12 11 10 14 14 C 1.37873 * 120.00261 * 64.57106 * 12 11 10 15 15 N 1.31519 * 120.00015 * 358.04065 * 14 12 11 16 16 Si 1.86792 * 120.00249 * 177.76802 * 14 12 11 17 17 H 1.48507 * 109.47023 * 5.29281 * 16 14 12 18 18 H 1.48501 * 109.47621 * 125.29205 * 16 14 12 19 19 H 1.48501 * 109.47228 * 245.29415 * 16 14 12 20 20 C 1.54271 * 110.07227 * 181.07137 * 11 10 7 21 21 C 1.54882 * 104.19738 * 95.69896 * 20 11 10 22 22 C 1.54896 * 102.74900 * 37.93881 * 21 20 11 23 23 C 1.53874 * 110.03325 * 298.26335 * 11 10 7 24 24 C 1.38213 * 120.00347 * 180.27473 * 2 1 3 25 25 C 1.50705 * 119.99756 * 359.97438 * 24 2 1 26 26 H 1.08999 * 109.47027 * 95.22662 * 1 2 3 27 27 H 1.09003 * 109.47172 * 215.22635 * 1 2 3 28 28 H 1.09003 * 109.47482 * 335.23102 * 1 2 3 29 29 H 1.08004 * 119.99837 * 0.02562 * 3 2 1 30 30 H 1.08002 * 119.99851 * 179.97438 * 4 3 2 31 31 H 1.07998 * 120.00044 * 179.97438 * 5 4 3 32 32 H 0.96996 * 120.00326 * 111.60404 * 10 7 6 33 33 H 0.97002 * 120.00369 * 184.56596 * 15 14 12 34 34 H 1.08999 * 110.48722 * 214.38074 * 20 11 10 35 35 H 1.09003 * 110.48599 * 337.01404 * 20 11 10 36 36 H 1.09006 * 110.75824 * 279.62929 * 21 20 11 37 37 H 1.08998 * 110.91981 * 156.32744 * 21 20 11 38 38 H 1.08994 * 110.48642 * 203.38054 * 22 21 20 39 39 H 1.09006 * 110.48240 * 80.73813 * 22 21 20 40 40 H 1.08999 * 110.03206 * 359.94937 * 23 11 10 41 41 H 1.09002 * 110.03153 * 121.38444 * 23 11 10 42 42 H 1.08993 * 109.47323 * 275.15410 * 25 24 2 43 43 H 1.09002 * 109.47110 * 35.15454 * 25 24 2 44 44 H 1.09000 * 109.46930 * 155.14834 * 25 24 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1983 1.1973 0.0000 4 6 3.5804 1.1974 -0.0005 5 6 4.2717 0.0001 -0.0005 6 6 3.5806 -1.1969 0.0005 7 16 4.4617 -2.7228 -0.0001 8 8 5.8424 -2.3890 0.0352 9 8 3.8809 -3.5210 -1.0223 10 7 4.1276 -3.4824 1.4329 11 6 4.6317 -2.9269 2.6913 12 6 4.0991 -1.5311 2.8892 13 1 4.7775 -0.6909 2.9009 14 6 2.7457 -1.3267 3.0551 15 7 1.9155 -2.3453 3.0023 16 14 2.0920 0.3959 3.3625 17 1 3.2044 1.3739 3.2555 18 1 1.0511 0.7179 2.3535 19 1 1.5009 0.4656 4.7231 20 6 4.2112 -3.8254 3.8728 21 6 5.4347 -4.7464 4.1040 22 6 6.6310 -3.7945 3.8549 23 6 6.1703 -2.9073 2.6799 24 6 2.1981 -1.1969 -0.0057 25 6 1.4446 -2.5021 -0.0114 26 1 -0.3633 -0.0936 -1.0234 27 1 -0.3634 -0.8395 0.5928 28 1 -0.3634 0.9331 0.4306 29 1 1.6582 2.1327 0.0004 30 1 4.1204 2.1328 -0.0010 31 1 5.3517 0.0001 -0.0014 32 1 3.5980 -4.2950 1.4392 33 1 0.9586 -2.1943 3.0526 34 1 4.0145 -3.2225 4.7594 35 1 3.3335 -4.4157 3.6096 36 1 5.4400 -5.5687 3.3884 37 1 5.4490 -5.1254 5.1258 38 1 7.5193 -4.3624 3.5786 39 1 6.8252 -3.1866 4.7386 40 1 6.5419 -3.3119 1.7385 41 1 6.5317 -1.8882 2.8175 42 1 1.1834 -2.7752 1.0109 43 1 0.5350 -2.3939 -0.6023 44 1 2.0704 -3.2809 -0.4471 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001261004543.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:14:42 Heat of formation + Delta-G solvation = -54.262444 kcal Electronic energy + Delta-G solvation = -28354.102476 eV Core-core repulsion = 24783.982006 eV Total energy + Delta-G solvation = -3570.120470 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 323.134 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -38.97510 -37.75511 -36.31230 -34.94966 -33.08940 -32.68311 -31.61581 -31.53779 -27.72223 -27.36691 -26.80629 -25.73487 -23.93679 -22.18464 -20.32570 -19.85399 -19.17472 -18.35520 -17.00964 -16.38443 -16.16476 -15.50897 -15.13627 -14.83036 -14.57833 -14.13910 -13.87581 -13.77747 -13.39826 -13.05779 -12.40822 -12.29372 -12.24357 -12.09909 -11.92723 -11.76302 -11.56508 -11.51323 -11.42713 -11.24313 -10.98878 -10.73700 -10.69837 -10.58533 -10.39818 -10.23852 -10.05558 -9.87463 -9.85901 -9.65958 -9.38999 -9.22204 -8.73705 -8.23921 -7.95901 -7.85123 -6.22303 -4.30160 1.48327 1.73034 2.01720 3.20974 3.32403 3.36857 4.01024 4.22887 4.32166 4.76653 5.12017 5.23351 5.31998 5.51192 5.54902 5.67906 5.71179 5.75418 5.77334 5.82466 5.93380 6.06145 6.15586 6.20934 6.43188 6.47679 6.49821 6.56234 6.60573 6.64155 6.71283 6.79430 6.83859 6.91220 6.96568 6.98564 7.02328 7.13934 7.19172 7.29656 7.42225 7.58939 7.64745 7.80003 8.25545 8.43705 8.77246 9.40603 10.79928 Molecular weight = 323.13amu Principal moments of inertia in cm(-1) A = 0.014288 B = 0.008250 C = 0.006868 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1959.260523 B = 3393.270231 C = 4076.033702 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.106 4.106 2 C -0.115 4.115 3 C -0.082 4.082 4 C -0.156 4.156 5 C -0.016 4.016 6 C -0.618 4.618 7 S 2.698 3.302 8 O -0.979 6.979 9 O -0.998 6.998 10 N -1.075 6.075 11 C 0.299 3.701 12 C -0.531 4.531 13 H 0.064 0.936 14 C 0.100 3.900 15 N -0.858 5.858 16 Si 0.861 3.139 17 H -0.272 1.272 18 H -0.259 1.259 19 H -0.294 1.294 20 C -0.080 4.080 21 C -0.135 4.135 22 C -0.120 4.120 23 C -0.138 4.138 24 C 0.048 3.952 25 C -0.177 4.177 26 H 0.061 0.939 27 H 0.069 0.931 28 H 0.056 0.944 29 H 0.112 0.888 30 H 0.117 0.883 31 H 0.132 0.868 32 H 0.399 0.601 33 H 0.261 0.739 34 H 0.064 0.936 35 H 0.066 0.934 36 H 0.053 0.947 37 H 0.047 0.953 38 H 0.046 0.954 39 H 0.055 0.945 40 H 0.072 0.928 41 H 0.061 0.939 42 H 0.121 0.879 43 H 0.059 0.941 44 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.848 0.888 -2.428 2.720 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C -0.116 4.116 3 C -0.100 4.100 4 C -0.175 4.175 5 C -0.036 4.036 6 C -0.704 4.704 7 S 2.790 3.210 8 O -0.969 6.969 9 O -0.988 6.988 10 N -0.834 5.834 11 C 0.214 3.786 12 C -0.571 4.571 13 H 0.082 0.918 14 C -0.106 4.106 15 N -0.495 5.495 16 Si 0.689 3.311 17 H -0.197 1.197 18 H -0.184 1.184 19 H -0.221 1.221 20 C -0.121 4.121 21 C -0.173 4.173 22 C -0.158 4.158 23 C -0.177 4.177 24 C 0.047 3.953 25 C -0.233 4.233 26 H 0.080 0.920 27 H 0.088 0.912 28 H 0.075 0.925 29 H 0.130 0.870 30 H 0.135 0.865 31 H 0.149 0.851 32 H 0.232 0.768 33 H 0.071 0.929 34 H 0.083 0.917 35 H 0.085 0.915 36 H 0.072 0.928 37 H 0.066 0.934 38 H 0.065 0.935 39 H 0.074 0.926 40 H 0.090 0.910 41 H 0.080 0.920 42 H 0.139 0.861 43 H 0.078 0.922 44 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges -0.381 0.690 -3.055 3.155 hybrid contribution -1.256 1.569 0.706 2.130 sum -1.637 2.259 -2.349 3.647 Atomic orbital electron populations 1.20740 0.91855 1.02393 1.01310 1.19618 0.95606 0.92939 1.03410 1.21018 0.94433 0.97002 0.97570 1.20964 0.94175 0.97819 1.04568 1.20663 0.99651 0.91111 0.92144 1.30496 1.05250 1.20064 1.14627 1.01359 0.73498 0.73378 0.72739 1.93467 1.31351 1.84923 1.87175 1.93438 1.79104 1.68609 1.57653 1.55877 1.68715 1.37058 1.21755 1.18358 0.87616 0.92311 0.80296 1.21599 0.92664 0.92095 1.50722 0.91804 1.24770 0.96917 0.96019 0.92905 1.69933 1.02644 1.29545 1.47382 0.87077 0.80257 0.85983 0.77827 1.19689 1.18358 1.22083 1.22290 0.95149 0.96054 0.98571 1.22656 0.97335 0.97996 0.99265 1.22307 0.96967 0.97637 0.98860 1.22910 0.97487 0.99473 0.97857 1.19113 0.91392 0.95068 0.89743 1.21809 1.00570 0.94719 1.06199 0.92003 0.91249 0.92472 0.87038 0.86540 0.85060 0.76818 0.92891 0.91712 0.91507 0.92805 0.93405 0.93508 0.92640 0.90994 0.91994 0.86102 0.92226 0.89230 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.66 8.46 36.00 0.30 -1.36 16 2 C -0.11 -2.13 3.73 -104.63 -0.39 -2.52 16 3 C -0.08 -1.45 7.90 -39.58 -0.31 -1.77 16 4 C -0.16 -2.81 9.93 -39.58 -0.39 -3.20 16 5 C -0.02 -0.32 9.25 -39.58 -0.37 -0.69 16 6 C -0.62 -12.84 3.72 -39.58 -0.15 -12.98 16 7 S 2.70 57.09 4.87 -107.50 -0.52 56.57 16 8 O -0.98 -21.95 13.82 -57.17 -0.79 -22.74 16 9 O -1.00 -22.13 15.38 -57.17 -0.88 -23.01 16 10 N -1.08 -21.91 4.91 0.52 0.00 -21.91 16 11 C 0.30 6.31 0.61 -131.85 -0.08 6.23 16 12 C -0.53 -12.30 5.72 -34.44 -0.20 -12.50 16 13 H 0.06 1.57 7.34 -52.49 -0.39 1.19 16 14 C 0.10 2.30 3.46 -17.82 -0.06 2.24 16 15 N -0.86 -19.26 9.42 55.43 0.52 -18.73 16 16 Si 0.86 19.21 26.62 -169.99 -4.53 14.69 16 17 H -0.27 -6.33 7.11 56.52 0.40 -5.93 16 18 H -0.26 -5.45 5.06 56.52 0.29 -5.16 16 19 H -0.29 -6.85 7.11 56.52 0.40 -6.45 16 20 C -0.08 -1.61 4.82 -25.07 -0.12 -1.73 16 21 C -0.13 -2.33 6.91 -24.74 -0.17 -2.50 16 22 C -0.12 -2.11 6.83 -25.07 -0.17 -2.29 16 23 C -0.14 -2.82 5.24 -25.61 -0.13 -2.95 16 24 C 0.05 0.96 4.34 -104.62 -0.45 0.51 16 25 C -0.18 -3.34 8.52 36.01 0.31 -3.04 16 26 H 0.06 0.84 8.14 -51.93 -0.42 0.42 16 27 H 0.07 1.09 7.11 -51.93 -0.37 0.72 16 28 H 0.06 0.83 8.05 -51.93 -0.42 0.41 16 29 H 0.11 1.69 8.06 -52.48 -0.42 1.27 16 30 H 0.12 1.76 8.06 -52.49 -0.42 1.34 16 31 H 0.13 2.47 7.33 -52.49 -0.38 2.09 16 32 H 0.40 7.61 8.37 -34.47 -0.29 7.32 16 33 H 0.26 5.76 8.08 -40.82 -0.33 5.43 16 34 H 0.06 1.40 7.83 -51.93 -0.41 0.99 16 35 H 0.07 1.36 7.41 -51.93 -0.38 0.98 16 36 H 0.05 0.89 8.14 -51.93 -0.42 0.46 16 37 H 0.05 0.75 8.14 -51.93 -0.42 0.33 16 38 H 0.05 0.75 8.14 -51.93 -0.42 0.32 16 39 H 0.05 0.94 8.14 -51.93 -0.42 0.52 16 40 H 0.07 1.51 5.84 -51.93 -0.30 1.21 16 41 H 0.06 1.31 7.38 -51.93 -0.38 0.92 16 42 H 0.12 2.37 5.47 -51.93 -0.28 2.09 16 43 H 0.06 0.98 7.09 -51.93 -0.37 0.61 16 44 H 0.09 1.76 4.67 -51.93 -0.24 1.52 16 LS Contribution 332.55 15.07 5.01 5.01 Total: -1.00 -26.04 332.55 -9.99 -36.03 By element: Atomic # 1 Polarization: 19.06 SS G_CDS: -6.42 Total: 12.64 kcal Atomic # 6 Polarization: -36.16 SS G_CDS: -2.39 Total: -38.54 kcal Atomic # 7 Polarization: -41.16 SS G_CDS: 0.52 Total: -40.64 kcal Atomic # 8 Polarization: -44.08 SS G_CDS: -1.67 Total: -45.75 kcal Atomic # 14 Polarization: 19.21 SS G_CDS: -4.53 Total: 14.69 kcal Atomic # 16 Polarization: 57.09 SS G_CDS: -0.52 Total: 56.57 kcal Total LS contribution 5.01 Total: 5.01 kcal Total: -26.04 -9.99 -36.03 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001261004543.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -18.235 kcal (2) G-P(sol) polarization free energy of solvation -26.037 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.272 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.991 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.027 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.262 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds