Wall clock time and date at job start Tue Mar 31 2020 14:14:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.38258 * 120.00083 * 2 1 4 4 C 1.38216 * 120.00364 * 180.02562 * 3 2 1 5 5 C 1.38254 * 119.99725 * 359.97438 * 4 3 2 6 6 C 1.38218 * 120.00084 * 359.97438 * 5 4 3 7 7 S 1.76197 * 119.99963 * 179.97438 * 6 5 4 8 8 O 1.42102 * 106.40330 * 1.55474 * 7 6 5 9 9 O 1.42098 * 106.40140 * 228.63114 * 7 6 5 10 10 N 1.65599 * 107.21790 * 115.08986 * 7 6 5 11 11 C 1.46501 * 120.00004 * 291.60706 * 10 7 6 12 12 C 1.50707 * 110.01717 * 59.65724 * 11 10 7 13 13 H 1.07993 * 119.99710 * 244.57521 * 12 11 10 14 14 C 1.37873 * 120.00261 * 64.57106 * 12 11 10 15 15 N 1.31519 * 120.00015 * 358.04065 * 14 12 11 16 16 Si 1.86792 * 120.00249 * 177.76802 * 14 12 11 17 17 H 1.48507 * 109.47023 * 5.29281 * 16 14 12 18 18 H 1.48501 * 109.47621 * 125.29205 * 16 14 12 19 19 H 1.48501 * 109.47228 * 245.29415 * 16 14 12 20 20 C 1.54271 * 110.07227 * 181.07137 * 11 10 7 21 21 C 1.54882 * 104.19738 * 95.69896 * 20 11 10 22 22 C 1.54896 * 102.74900 * 37.93881 * 21 20 11 23 23 C 1.53874 * 110.03325 * 298.26335 * 11 10 7 24 24 C 1.38213 * 120.00347 * 180.27473 * 2 1 3 25 25 C 1.50705 * 119.99756 * 359.97438 * 24 2 1 26 26 H 1.08999 * 109.47027 * 95.22662 * 1 2 3 27 27 H 1.09003 * 109.47172 * 215.22635 * 1 2 3 28 28 H 1.09003 * 109.47482 * 335.23102 * 1 2 3 29 29 H 1.08004 * 119.99837 * 0.02562 * 3 2 1 30 30 H 1.08002 * 119.99851 * 179.97438 * 4 3 2 31 31 H 1.07998 * 120.00044 * 179.97438 * 5 4 3 32 32 H 0.96996 * 120.00326 * 111.60404 * 10 7 6 33 33 H 0.97002 * 120.00369 * 184.56596 * 15 14 12 34 34 H 1.08999 * 110.48722 * 214.38074 * 20 11 10 35 35 H 1.09003 * 110.48599 * 337.01404 * 20 11 10 36 36 H 1.09006 * 110.75824 * 279.62929 * 21 20 11 37 37 H 1.08998 * 110.91981 * 156.32744 * 21 20 11 38 38 H 1.08994 * 110.48642 * 203.38054 * 22 21 20 39 39 H 1.09006 * 110.48240 * 80.73813 * 22 21 20 40 40 H 1.08999 * 110.03206 * 359.94937 * 23 11 10 41 41 H 1.09002 * 110.03153 * 121.38444 * 23 11 10 42 42 H 1.08993 * 109.47323 * 275.15410 * 25 24 2 43 43 H 1.09002 * 109.47110 * 35.15454 * 25 24 2 44 44 H 1.09000 * 109.46930 * 155.14834 * 25 24 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1983 1.1973 0.0000 4 6 3.5804 1.1974 -0.0005 5 6 4.2717 0.0001 -0.0005 6 6 3.5806 -1.1969 0.0005 7 16 4.4617 -2.7228 -0.0001 8 8 5.8424 -2.3890 0.0352 9 8 3.8809 -3.5210 -1.0223 10 7 4.1276 -3.4824 1.4329 11 6 4.6317 -2.9269 2.6913 12 6 4.0991 -1.5311 2.8892 13 1 4.7775 -0.6909 2.9009 14 6 2.7457 -1.3267 3.0551 15 7 1.9155 -2.3453 3.0023 16 14 2.0920 0.3959 3.3625 17 1 3.2044 1.3739 3.2555 18 1 1.0511 0.7179 2.3535 19 1 1.5009 0.4656 4.7231 20 6 4.2112 -3.8254 3.8728 21 6 5.4347 -4.7464 4.1040 22 6 6.6310 -3.7945 3.8549 23 6 6.1703 -2.9073 2.6799 24 6 2.1981 -1.1969 -0.0057 25 6 1.4446 -2.5021 -0.0114 26 1 -0.3633 -0.0936 -1.0234 27 1 -0.3634 -0.8395 0.5928 28 1 -0.3634 0.9331 0.4306 29 1 1.6582 2.1327 0.0004 30 1 4.1204 2.1328 -0.0010 31 1 5.3517 0.0001 -0.0014 32 1 3.5980 -4.2950 1.4392 33 1 0.9586 -2.1943 3.0526 34 1 4.0145 -3.2225 4.7594 35 1 3.3335 -4.4157 3.6096 36 1 5.4400 -5.5687 3.3884 37 1 5.4490 -5.1254 5.1258 38 1 7.5193 -4.3624 3.5786 39 1 6.8252 -3.1866 4.7386 40 1 6.5419 -3.3119 1.7385 41 1 6.5317 -1.8882 2.8175 42 1 1.1834 -2.7752 1.0109 43 1 0.5350 -2.3939 -0.6023 44 1 2.0704 -3.2809 -0.4471 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001261004543.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:14:41 Heat of formation + Delta-G solvation = -68.989137 kcal Electronic energy + Delta-G solvation = -28354.741074 eV Core-core repulsion = 24783.982006 eV Total energy + Delta-G solvation = -3570.759067 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 323.134 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -40.41233 -39.36455 -38.02016 -36.68239 -34.71134 -34.11744 -33.23095 -33.05510 -29.30731 -28.90704 -28.30371 -27.13766 -25.61860 -23.66239 -21.75940 -21.33686 -20.82970 -20.00882 -18.70749 -17.96184 -17.85159 -17.07338 -16.63210 -16.50253 -16.13989 -15.66994 -15.48529 -15.24562 -14.84061 -14.72943 -13.86658 -13.80032 -13.69975 -13.58065 -13.43330 -13.28466 -13.16508 -13.01434 -12.95468 -12.90946 -12.66945 -12.41767 -12.34210 -12.29937 -11.88491 -11.80295 -11.58043 -11.46066 -11.43275 -11.18123 -11.03054 -10.89409 -10.40296 -9.80744 -9.61983 -9.29541 -8.00044 -6.09468 -0.11843 0.19750 0.56053 1.40921 1.51383 1.55229 2.41271 2.52984 2.70173 3.12836 3.35376 3.72538 3.98453 4.02800 4.12020 4.18026 4.28287 4.34074 4.36958 4.44660 4.67265 4.73651 4.80056 4.92161 4.95925 4.99141 5.02752 5.11548 5.14154 5.20920 5.26131 5.28334 5.35625 5.38275 5.41447 5.51656 5.53836 5.59129 5.66690 5.69357 5.81106 5.90093 6.10592 6.16490 6.53038 6.81732 6.96306 7.61068 9.01377 Molecular weight = 323.13amu Principal moments of inertia in cm(-1) A = 0.014288 B = 0.008250 C = 0.006868 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1959.260523 B = 3393.270231 C = 4076.033702 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.107 4.107 2 C -0.123 4.123 3 C -0.086 4.086 4 C -0.159 4.159 5 C -0.036 4.036 6 C -0.633 4.633 7 S 2.704 3.296 8 O -0.997 6.997 9 O -1.011 7.011 10 N -1.071 6.071 11 C 0.297 3.703 12 C -0.541 4.541 13 H 0.040 0.960 14 C 0.091 3.909 15 N -0.857 5.857 16 Si 0.879 3.121 17 H -0.288 1.288 18 H -0.235 1.235 19 H -0.308 1.308 20 C -0.075 4.075 21 C -0.126 4.126 22 C -0.116 4.116 23 C -0.141 4.141 24 C 0.032 3.968 25 C -0.174 4.174 26 H 0.084 0.916 27 H 0.065 0.935 28 H 0.070 0.930 29 H 0.142 0.858 30 H 0.143 0.857 31 H 0.129 0.871 32 H 0.404 0.596 33 H 0.263 0.737 34 H 0.045 0.955 35 H 0.060 0.940 36 H 0.064 0.936 37 H 0.069 0.931 38 H 0.067 0.933 39 H 0.060 0.940 40 H 0.063 0.937 41 H 0.045 0.955 42 H 0.113 0.887 43 H 0.081 0.919 44 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.834 1.135 -2.457 3.270 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C -0.124 4.124 3 C -0.104 4.104 4 C -0.177 4.177 5 C -0.055 4.055 6 C -0.722 4.722 7 S 2.798 3.202 8 O -0.988 6.988 9 O -1.002 7.002 10 N -0.830 5.830 11 C 0.212 3.788 12 C -0.581 4.581 13 H 0.059 0.941 14 C -0.116 4.116 15 N -0.493 5.493 16 Si 0.707 3.293 17 H -0.214 1.214 18 H -0.159 1.159 19 H -0.237 1.237 20 C -0.116 4.116 21 C -0.164 4.164 22 C -0.154 4.154 23 C -0.180 4.180 24 C 0.030 3.970 25 C -0.230 4.230 26 H 0.103 0.897 27 H 0.084 0.916 28 H 0.089 0.911 29 H 0.160 0.840 30 H 0.161 0.839 31 H 0.146 0.854 32 H 0.238 0.762 33 H 0.073 0.927 34 H 0.063 0.937 35 H 0.079 0.921 36 H 0.083 0.917 37 H 0.087 0.913 38 H 0.085 0.915 39 H 0.079 0.921 40 H 0.081 0.919 41 H 0.063 0.937 42 H 0.131 0.869 43 H 0.100 0.900 44 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -1.370 0.909 -3.094 3.504 hybrid contribution -0.952 1.567 0.695 1.961 sum -2.321 2.476 -2.399 4.156 Atomic orbital electron populations 1.20812 0.89705 1.02981 1.02878 1.20027 0.97320 0.92608 1.02466 1.21441 0.94472 0.98116 0.96362 1.21322 0.94807 0.98209 1.03389 1.20818 0.99825 0.91788 0.93102 1.30350 1.05892 1.19689 1.16258 1.00965 0.73114 0.73536 0.72557 1.93438 1.32679 1.85260 1.87400 1.93415 1.79226 1.69305 1.58217 1.55641 1.68836 1.37253 1.21311 1.18365 0.87994 0.91703 0.80750 1.21527 0.92576 0.92436 1.51558 0.94131 1.24881 0.96930 0.96757 0.92998 1.69935 1.02658 1.29499 1.47237 0.86854 0.80013 0.84937 0.77467 1.21362 1.15866 1.23680 1.22151 0.96283 0.96017 0.97103 1.22607 0.95328 0.97536 1.00908 1.22299 0.97908 0.97436 0.97749 1.22884 0.97129 0.99184 0.98807 1.19309 0.91174 0.96111 0.90392 1.21758 1.01213 0.94088 1.05932 0.89745 0.91572 0.91147 0.83991 0.83874 0.85351 0.76173 0.92706 0.93661 0.92097 0.91741 0.91266 0.91466 0.92131 0.91889 0.93657 0.86909 0.89992 0.90426 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -2.99 8.46 71.23 0.60 -2.39 16 2 C -0.12 -4.28 3.73 -19.87 -0.07 -4.35 16 3 C -0.09 -2.81 7.90 22.27 0.18 -2.64 16 4 C -0.16 -5.44 9.93 22.27 0.22 -5.22 16 5 C -0.04 -1.41 9.25 22.27 0.21 -1.21 16 6 C -0.63 -26.23 3.72 22.27 0.08 -26.15 16 7 S 2.70 115.67 4.87 -56.49 -0.28 115.39 16 8 O -1.00 -45.67 13.82 -128.00 -1.77 -47.44 16 9 O -1.01 -45.13 15.38 -128.00 -1.97 -47.10 16 10 N -1.07 -43.77 4.91 -152.28 -0.75 -44.51 16 11 C 0.30 12.57 0.61 3.59 0.00 12.57 16 12 C -0.54 -25.35 5.72 25.60 0.15 -25.21 16 13 H 0.04 2.06 7.34 -2.91 -0.02 2.04 16 14 C 0.09 4.14 3.46 84.65 0.29 4.43 16 15 N -0.86 -37.94 9.42 21.45 0.20 -37.73 16 16 Si 0.88 38.32 26.62 68.60 1.83 40.14 16 17 H -0.29 -13.26 7.11 99.48 0.71 -12.56 16 18 H -0.24 -9.26 5.06 99.48 0.50 -8.75 16 19 H -0.31 -14.17 7.11 99.48 0.71 -13.46 16 20 C -0.08 -2.97 4.82 31.67 0.15 -2.81 16 21 C -0.13 -4.11 6.91 31.88 0.22 -3.89 16 22 C -0.12 -3.92 6.83 31.67 0.22 -3.70 16 23 C -0.14 -5.77 5.24 31.32 0.16 -5.60 16 24 C 0.03 1.22 4.34 -19.86 -0.09 1.14 16 25 C -0.17 -6.38 8.52 71.24 0.61 -5.78 16 26 H 0.08 1.98 8.14 -2.39 -0.02 1.96 16 27 H 0.07 1.89 7.11 -2.39 -0.02 1.87 16 28 H 0.07 1.77 8.05 -2.39 -0.02 1.75 16 29 H 0.14 3.73 8.06 -2.91 -0.02 3.71 16 30 H 0.14 4.02 8.06 -2.91 -0.02 3.99 16 31 H 0.13 4.97 7.33 -2.91 -0.02 4.95 16 32 H 0.40 15.42 8.37 -96.75 -0.81 14.61 16 33 H 0.26 11.34 8.08 -92.71 -0.75 10.59 16 34 H 0.04 1.94 7.83 -2.39 -0.02 1.92 16 35 H 0.06 2.44 7.41 -2.39 -0.02 2.43 16 36 H 0.06 1.97 8.14 -2.38 -0.02 1.95 16 37 H 0.07 1.98 8.14 -2.39 -0.02 1.96 16 38 H 0.07 2.00 8.14 -2.39 -0.02 1.98 16 39 H 0.06 1.97 8.14 -2.38 -0.02 1.95 16 40 H 0.06 2.67 5.84 -2.39 -0.01 2.65 16 41 H 0.04 1.96 7.38 -2.39 -0.02 1.94 16 42 H 0.11 4.33 5.47 -2.39 -0.01 4.31 16 43 H 0.08 2.55 7.09 -2.39 -0.02 2.54 16 44 H 0.08 3.03 4.67 -2.39 -0.01 3.01 16 Total: -1.00 -54.94 332.55 0.22 -54.71 By element: Atomic # 1 Polarization: 37.32 SS G_CDS: 0.03 Total: 37.34 kcal Atomic # 6 Polarization: -73.73 SS G_CDS: 2.93 Total: -70.80 kcal Atomic # 7 Polarization: -81.70 SS G_CDS: -0.55 Total: -82.25 kcal Atomic # 8 Polarization: -90.80 SS G_CDS: -3.74 Total: -94.54 kcal Atomic # 14 Polarization: 38.32 SS G_CDS: 1.83 Total: 40.14 kcal Atomic # 16 Polarization: 115.67 SS G_CDS: -0.28 Total: 115.39 kcal Total: -54.94 0.22 -54.71 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001261004543.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -14.276 kcal (2) G-P(sol) polarization free energy of solvation -54.936 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -69.211 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.222 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -54.714 kcal (6) G-S(sol) free energy of system = (1) + (5) -68.989 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds