Wall clock time and date at job start Tue Mar 31 2020 13:30:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31520 * 1 3 3 Si 1.86799 * 119.99514 * 2 1 4 4 H 1.48501 * 109.46737 * 180.02562 * 3 2 1 5 5 H 1.48509 * 109.46870 * 299.99418 * 3 2 1 6 6 H 1.48492 * 109.47269 * 59.99783 * 3 2 1 7 7 C 1.37871 * 120.00231 * 179.97438 * 2 1 3 8 8 H 1.07999 * 120.00293 * 179.97438 * 7 2 1 9 9 C 1.50701 * 120.00047 * 0.02562 * 7 2 1 10 10 C 1.53004 * 109.46951 * 179.97438 * 9 7 2 11 11 O 1.42906 * 109.47006 * 180.02562 * 10 9 7 12 12 C 1.35900 * 117.00091 * 180.02562 * 11 10 9 13 13 C 1.38803 * 120.01720 * 0.02562 * 12 11 10 14 14 C 1.38171 * 120.08295 * 179.97438 * 13 12 11 15 15 C 1.38172 * 120.12564 * 359.77188 * 14 13 12 16 16 C 1.38894 * 120.03486 * 0.50719 * 15 14 13 17 17 N 1.39918 * 120.04101 * 179.74176 * 16 15 14 18 18 C 1.34775 * 120.00108 * 326.51453 * 17 16 15 19 19 O 1.21295 * 119.99692 * 354.72421 * 18 17 16 20 20 C 1.50695 * 120.00288 * 174.72739 * 18 17 16 21 21 F 1.39901 * 111.01847 * 307.23086 * 20 18 17 22 22 C 1.55568 * 111.22794 * 182.92572 * 20 18 17 23 23 C 1.54386 * 102.27368 * 207.98439 * 22 20 18 24 24 O 1.43232 * 107.58865 * 21.35211 * 23 22 20 25 25 C 1.43642 * 109.97348 * 1.71793 * 24 23 22 26 26 C 1.38582 * 120.01778 * 179.97438 * 12 11 10 27 27 H 0.96990 * 120.00604 * 0.02562 * 1 2 3 28 28 H 1.09005 * 109.47286 * 59.99773 * 9 7 2 29 29 H 1.09004 * 109.47296 * 299.99752 * 9 7 2 30 30 H 1.08992 * 109.47160 * 60.00099 * 10 9 7 31 31 H 1.08996 * 109.46898 * 299.99245 * 10 9 7 32 32 H 1.07995 * 119.96199 * 359.97438 * 13 12 11 33 33 H 1.07999 * 119.93859 * 180.02562 * 14 13 12 34 34 H 1.07994 * 119.98038 * 180.25051 * 15 14 13 35 35 H 0.97001 * 120.00136 * 146.50997 * 17 16 15 36 36 H 1.08997 * 110.83670 * 89.78229 * 22 20 18 37 37 H 1.08997 * 111.00880 * 326.26126 * 22 20 18 38 38 H 1.08998 * 109.82493 * 261.83866 * 23 22 20 39 39 H 1.09003 * 109.82483 * 140.86923 * 23 22 20 40 40 H 1.09000 * 110.31376 * 94.48365 * 25 24 23 41 41 H 1.08999 * 110.30653 * 216.55697 * 25 24 23 42 42 H 1.07997 * 120.06761 * 0.04216 * 26 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.7091 1.3465 -0.0006 5 1 1.8903 2.3964 -1.2127 6 1 1.8902 2.3965 1.2124 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1940 0.0001 9 6 1.2512 -2.4991 0.0005 10 6 2.2455 -3.6620 0.0005 11 8 1.5311 -4.8996 -0.0001 12 6 2.2713 -6.0394 0.0004 13 6 3.6574 -5.9671 0.0019 14 6 4.4113 -7.1250 0.0029 15 6 3.7882 -8.3582 0.0072 16 6 2.4015 -8.4365 -0.0002 17 7 1.7704 -9.6852 -0.0014 18 6 2.3387 -10.7269 -0.6404 19 8 3.3468 -10.5605 -1.2941 20 6 1.7218 -12.0983 -0.5428 21 9 1.5230 -12.4653 0.7925 22 6 2.5799 -13.1567 -1.2936 23 6 1.5234 -14.2057 -1.7024 24 8 0.2450 -13.5600 -1.6898 25 6 0.3987 -12.1739 -1.3457 26 6 1.6426 -7.2744 0.0004 27 1 -0.4850 0.8399 -0.0004 28 1 0.6248 -2.5571 -0.8897 29 1 0.6242 -2.5567 0.8903 30 1 2.8721 -3.6042 0.8905 31 1 2.8720 -3.6042 -0.8895 32 1 4.1473 -5.0046 0.0024 33 1 5.4897 -7.0660 0.0046 34 1 4.3798 -9.2617 0.0120 35 1 0.9239 -9.8013 0.4577 36 1 3.3244 -13.5946 -0.6287 37 1 3.0554 -12.7220 -2.1727 38 1 1.5278 -15.0314 -0.9909 39 1 1.7401 -14.5777 -2.7038 40 1 0.4681 -11.5656 -2.2474 41 1 -0.4371 -11.8422 -0.7296 42 1 0.5642 -7.3325 -0.0007 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001261217135.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:30:10 Heat of formation + Delta-G solvation = -140.081434 kcal Electronic energy + Delta-G solvation = -26215.464095 eV Core-core repulsion = 22075.409058 eV Total energy + Delta-G solvation = -4140.055037 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 323.137 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -48.54952 -41.00063 -39.75156 -39.06620 -37.25834 -34.92943 -33.40694 -32.51244 -31.01032 -30.46429 -29.54048 -28.83461 -25.28918 -24.58161 -23.25952 -22.76644 -22.14481 -20.86105 -20.41259 -18.84094 -18.31279 -17.59713 -16.58108 -16.45817 -16.18313 -16.02452 -15.71164 -15.61623 -15.47744 -15.34817 -15.04657 -14.74799 -14.47925 -14.25028 -13.67231 -13.60675 -13.10097 -12.88672 -12.84401 -12.36081 -12.28532 -12.21391 -11.97883 -11.83282 -11.59218 -11.43058 -10.98968 -10.83214 -10.62396 -10.49268 -10.25802 -10.18400 -9.88188 -9.69954 -9.32387 -8.52139 -8.45505 -7.89494 -6.13663 -4.18401 1.08558 1.55273 1.96521 2.25929 3.01608 3.24506 3.26734 3.31801 3.35240 3.59561 3.77904 3.84212 3.98440 4.07118 4.29908 4.38477 4.51052 4.89077 4.90509 5.00322 5.14015 5.16711 5.21929 5.22969 5.25626 5.33478 5.38060 5.53557 5.62496 5.97102 5.98534 6.11423 6.18272 6.20576 6.44782 6.51245 6.64724 6.79743 6.92720 7.43893 7.47438 7.59469 7.76006 7.98339 8.19802 8.87383 9.46239 10.97907 Molecular weight = 323.14amu Principal moments of inertia in cm(-1) A = 0.033071 B = 0.001975 C = 0.001910 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 846.465333 B =14172.960081 C =14659.648346 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.889 5.889 2 C 0.060 3.940 3 Si 0.899 3.101 4 H -0.272 1.272 5 H -0.282 1.282 6 H -0.282 1.282 7 C -0.526 4.526 8 H 0.059 0.941 9 C 0.025 3.975 10 C 0.065 3.935 11 O -0.313 6.313 12 C 0.165 3.835 13 C -0.219 4.219 14 C -0.061 4.061 15 C -0.168 4.168 16 C 0.171 3.829 17 N -0.657 5.657 18 C 0.512 3.488 19 O -0.493 6.493 20 C 0.067 3.933 21 F -0.175 7.175 22 C -0.159 4.159 23 C 0.049 3.951 24 O -0.369 6.369 25 C 0.042 3.958 26 C -0.184 4.184 27 H 0.263 0.737 28 H 0.028 0.972 29 H 0.028 0.972 30 H 0.052 0.948 31 H 0.052 0.948 32 H 0.134 0.866 33 H 0.127 0.873 34 H 0.129 0.871 35 H 0.415 0.585 36 H 0.103 0.897 37 H 0.113 0.887 38 H 0.080 0.920 39 H 0.082 0.918 40 H 0.089 0.911 41 H 0.108 0.892 42 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.196 -27.695 -0.993 28.029 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.527 5.527 2 C -0.142 4.142 3 Si 0.726 3.274 4 H -0.196 1.196 5 H -0.208 1.208 6 H -0.208 1.208 7 C -0.565 4.565 8 H 0.077 0.923 9 C -0.012 4.012 10 C -0.009 4.009 11 O -0.226 6.226 12 C 0.117 3.883 13 C -0.238 4.238 14 C -0.079 4.079 15 C -0.188 4.188 16 C 0.078 3.922 17 N -0.302 5.302 18 C 0.296 3.704 19 O -0.365 6.365 20 C 0.044 3.956 21 F -0.155 7.155 22 C -0.197 4.197 23 C -0.027 4.027 24 O -0.288 6.288 25 C -0.036 4.036 26 C -0.205 4.205 27 H 0.073 0.927 28 H 0.046 0.954 29 H 0.046 0.954 30 H 0.071 0.929 31 H 0.071 0.929 32 H 0.152 0.848 33 H 0.145 0.855 34 H 0.147 0.853 35 H 0.251 0.749 36 H 0.121 0.879 37 H 0.131 0.869 38 H 0.098 0.902 39 H 0.100 0.900 40 H 0.107 0.893 41 H 0.126 0.874 42 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges 4.356 -27.583 -1.474 27.963 hybrid contribution 0.397 1.068 0.470 1.232 sum 4.752 -26.515 -1.004 26.956 Atomic orbital electron populations 1.69980 1.06101 1.26911 1.49736 1.24996 0.94919 0.99432 0.94891 0.86425 0.79984 0.83213 0.77731 1.19624 1.20832 1.20825 1.21001 0.93105 0.90158 1.52187 0.92267 1.19140 0.94180 0.89005 0.98910 1.23380 0.97143 0.80554 0.99856 1.86172 1.36544 1.13164 1.86752 1.18806 0.89917 0.87118 0.92476 1.21439 0.93090 1.00056 1.09238 1.20784 0.99686 0.91199 0.96279 1.20856 0.92483 0.98620 1.06855 1.17247 0.91706 0.83120 1.00136 1.43377 1.25623 1.08248 1.52918 1.20309 0.84942 0.85400 0.79762 1.90791 1.23266 1.83996 1.38487 1.22812 0.99085 0.93411 0.80250 1.92964 1.95960 1.92486 1.34103 1.23672 0.98764 0.94705 1.02542 1.23263 0.81618 0.95379 1.02442 1.88481 1.28518 1.20639 1.91168 1.23968 0.95182 0.85301 0.99118 1.19976 1.00149 0.88833 1.11510 0.92732 0.95372 0.95354 0.92926 0.92946 0.84837 0.85535 0.85290 0.74881 0.87858 0.86876 0.90190 0.90003 0.89327 0.87351 0.84871 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.16 13.29 55.43 0.74 -25.42 16 2 C 0.06 1.68 5.46 -17.82 -0.10 1.58 16 3 Si 0.90 21.06 29.54 -169.99 -5.02 16.03 16 4 H -0.27 -6.19 7.11 56.52 0.40 -5.79 16 5 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 6 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 7 C -0.53 -14.46 9.11 -34.44 -0.31 -14.77 16 8 H 0.06 1.55 7.74 -52.49 -0.41 1.15 16 9 C 0.02 0.64 5.34 -27.88 -0.15 0.49 16 10 C 0.06 1.34 4.68 37.16 0.17 1.52 16 11 O -0.31 -6.20 10.13 -19.43 -0.20 -6.39 16 12 C 0.16 2.75 6.68 -39.25 -0.26 2.49 16 13 C -0.22 -3.32 9.04 -39.40 -0.36 -3.67 16 14 C -0.06 -0.80 10.03 -39.63 -0.40 -1.20 16 15 C -0.17 -2.25 8.65 -39.36 -0.34 -2.59 16 16 C 0.17 2.20 6.27 -83.72 -0.53 1.67 16 17 N -0.66 -6.44 5.34 -9.88 -0.05 -6.49 16 18 C 0.51 5.15 6.67 -10.99 -0.07 5.08 16 19 O -0.49 -6.32 13.40 5.54 0.07 -6.24 16 20 C 0.07 0.52 1.52 -89.38 -0.14 0.38 16 21 F -0.17 -1.52 17.03 2.25 0.04 -1.48 16 22 C -0.16 -1.04 6.03 -24.64 -0.15 -1.18 16 23 C 0.05 0.30 7.80 37.88 0.30 0.59 16 24 O -0.37 -3.08 11.36 -35.23 -0.40 -3.48 16 25 C 0.04 0.29 7.05 38.18 0.27 0.56 16 26 C -0.18 -2.61 9.90 -39.25 -0.39 -3.00 16 27 H 0.26 7.25 8.31 -40.82 -0.34 6.91 16 28 H 0.03 0.77 8.14 -51.93 -0.42 0.34 16 29 H 0.03 0.77 8.14 -51.93 -0.42 0.35 16 30 H 0.05 1.03 7.66 -51.93 -0.40 0.64 16 31 H 0.05 1.04 7.66 -51.93 -0.40 0.64 16 32 H 0.13 1.97 6.29 -52.49 -0.33 1.64 16 33 H 0.13 1.35 8.06 -52.49 -0.42 0.93 16 34 H 0.13 1.69 6.42 -52.49 -0.34 1.35 16 35 H 0.41 2.88 8.82 -40.82 -0.36 2.52 16 36 H 0.10 0.58 8.14 -51.93 -0.42 0.16 16 37 H 0.11 0.77 7.33 -51.93 -0.38 0.39 16 38 H 0.08 0.41 8.14 -51.93 -0.42 -0.02 16 39 H 0.08 0.38 8.14 -51.93 -0.42 -0.05 16 40 H 0.09 0.56 8.02 -51.93 -0.42 0.14 16 41 H 0.11 0.57 8.14 -51.93 -0.42 0.15 16 42 H 0.13 1.67 8.06 -52.49 -0.42 1.25 16 LS Contribution 358.86 15.07 5.41 5.41 Total: -1.00 -32.31 358.86 -7.41 -39.71 By element: Atomic # 1 Polarization: 5.95 SS G_CDS: -5.54 Total: 0.41 kcal Atomic # 6 Polarization: -9.61 SS G_CDS: -2.45 Total: -12.06 kcal Atomic # 7 Polarization: -32.60 SS G_CDS: 0.68 Total: -31.91 kcal Atomic # 8 Polarization: -15.59 SS G_CDS: -0.52 Total: -16.11 kcal Atomic # 9 Polarization: -1.52 SS G_CDS: 0.04 Total: -1.48 kcal Atomic # 14 Polarization: 21.06 SS G_CDS: -5.02 Total: 16.03 kcal Total LS contribution 5.41 Total: 5.41 kcal Total: -32.31 -7.41 -39.71 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001261217135.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -100.367 kcal (2) G-P(sol) polarization free energy of solvation -32.308 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -132.675 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.407 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.715 kcal (6) G-S(sol) free energy of system = (1) + (5) -140.081 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds