Wall clock time and date at job start Tue Mar 31 2020 13:40:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86793 * 119.99804 * 2 1 4 4 H 1.48505 * 109.47430 * 270.00249 * 3 2 1 5 5 H 1.48499 * 109.47249 * 30.00341 * 3 2 1 6 6 H 1.48498 * 109.47168 * 150.00112 * 3 2 1 7 7 C 1.37874 * 120.00130 * 180.02562 * 2 1 3 8 8 H 1.07990 * 120.00205 * 180.02562 * 7 2 1 9 9 C 1.50702 * 120.00030 * 359.97438 * 7 2 1 10 10 N 1.46496 * 109.47157 * 180.02562 * 9 7 2 11 11 C 1.34541 * 125.20575 * 124.98053 * 10 9 7 12 12 C 1.37822 * 107.87992 * 179.71819 * 11 10 9 13 13 C 1.47298 * 126.78219 * 180.25080 * 12 11 10 14 14 N 1.29830 * 120.00406 * 180.19797 * 13 12 11 15 15 N 1.40104 * 120.00154 * 180.02562 * 14 13 12 16 16 C 1.36266 * 127.09566 * 314.68548 * 15 14 13 17 17 N 1.30627 * 107.21443 * 179.89610 * 16 15 14 18 18 N 1.28552 * 109.87998 * 0.38248 * 17 16 15 19 19 C 1.30631 * 109.87817 * 359.75806 * 18 17 16 20 20 C 1.46552 * 106.44154 * 0.42390 * 12 11 10 21 21 C 1.48223 * 126.48680 * 179.83320 * 20 12 11 22 22 C 1.39830 * 120.91471 * 144.71024 * 21 20 12 23 23 C 1.37947 * 119.01816 * 179.97438 * 22 21 20 24 24 N 1.31944 * 120.88484 * 0.02562 * 23 22 21 25 25 C 1.31936 * 122.01965 * 359.97438 * 24 23 22 26 26 C 1.37952 * 120.88704 * 359.97438 * 25 24 23 27 27 N 1.31487 * 107.03513 * 359.56851 * 20 12 11 28 28 H 0.97003 * 120.00311 * 359.97438 * 1 2 3 29 29 H 1.09004 * 109.47284 * 60.00514 * 9 7 2 30 30 H 1.08998 * 109.47098 * 300.00214 * 9 7 2 31 31 H 1.08006 * 126.05888 * 0.02562 * 11 10 9 32 32 H 1.08006 * 119.99773 * 0.20506 * 13 12 11 33 33 H 1.08009 * 126.39528 * 0.03868 * 16 15 14 34 34 H 1.07996 * 126.39014 * 180.02562 * 19 18 17 35 35 H 1.08004 * 120.49202 * 359.95823 * 22 21 20 36 36 H 1.07996 * 119.56232 * 180.02562 * 23 22 21 37 37 H 1.07994 * 119.55882 * 179.97438 * 25 24 23 38 38 H 1.07997 * 120.48999 * 179.97438 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4965 2.0465 -1.4001 5 1 1.4465 2.6526 0.7001 6 1 3.5466 1.4402 0.7000 7 6 2.0045 -1.1940 -0.0005 8 1 3.0845 -1.1940 -0.0001 9 6 1.2511 -2.4991 -0.0005 10 7 2.2031 -3.6126 -0.0005 11 6 2.2281 -4.6117 0.9002 12 6 3.2579 -5.4622 0.5602 13 6 3.6524 -6.6949 1.2634 14 7 4.6525 -7.3991 0.8281 15 7 5.0273 -8.5718 1.4967 16 6 5.1669 -8.7424 2.8414 17 7 5.5262 -9.9827 3.0385 18 7 5.6276 -10.5928 1.9115 19 6 5.3334 -9.7755 0.9359 20 6 3.8857 -4.8958 -0.6368 21 6 5.0432 -5.4560 -1.3739 22 6 5.1286 -5.3492 -2.7655 23 6 6.2236 -5.8842 -3.4118 24 7 7.1805 -6.4898 -2.7347 25 6 7.1387 -6.6121 -1.4217 26 6 6.0803 -6.1049 -0.6966 27 7 3.2243 -3.7996 -0.9365 28 1 -0.4851 0.8400 0.0004 29 1 0.6241 -2.5568 -0.8904 30 1 0.6248 -2.5571 0.8896 31 1 1.5567 -4.7293 1.7380 32 1 3.1095 -7.0131 2.1413 33 1 5.0076 -7.9927 3.6025 34 1 5.3324 -10.0101 -0.1183 35 1 4.3486 -4.8554 -3.3262 36 1 6.2987 -5.8063 -4.4863 37 1 7.9437 -7.1159 -0.9076 38 1 6.0524 -6.2089 0.3780 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001320982021.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:40:39 Heat of formation + Delta-G solvation = 247.473359 kcal Electronic energy + Delta-G solvation = -25457.061568 eV Core-core repulsion = 21725.626552 eV Total energy + Delta-G solvation = -3731.435016 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 323.119 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -42.98036 -40.93700 -39.69520 -37.10653 -34.40907 -33.12124 -32.59746 -31.18891 -31.00907 -30.66799 -29.79996 -27.44436 -24.63894 -24.43427 -23.39395 -22.67802 -22.24115 -21.68859 -20.42451 -19.70742 -18.18838 -17.22025 -16.91588 -16.18915 -15.98599 -15.82462 -15.64350 -15.41734 -14.87866 -14.75905 -14.54226 -14.16451 -13.77596 -13.68445 -13.35935 -12.92196 -12.68410 -12.45512 -12.22730 -11.98970 -11.60554 -11.28135 -11.13365 -11.08035 -10.60674 -10.53287 -10.42983 -10.29336 -10.05903 -9.63100 -9.56500 -9.41025 -8.99569 -8.89395 -8.84026 -8.08108 -6.51386 -4.58723 0.64123 1.13539 1.24801 1.76102 1.93024 2.37256 2.73913 2.83756 2.99469 3.08331 3.15593 3.19930 3.93258 4.03470 4.10257 4.18745 4.38855 4.49593 4.52540 4.71074 4.86399 4.98795 5.04173 5.16501 5.18095 5.30201 5.32097 5.49774 5.54902 5.71013 5.85973 5.91328 5.92317 6.13511 6.30131 6.40504 6.59141 6.72654 6.75983 7.19720 7.45593 7.52533 7.54642 7.93127 8.03314 8.47907 8.54484 9.09416 10.57470 Molecular weight = 323.12amu Principal moments of inertia in cm(-1) A = 0.013808 B = 0.003322 C = 0.002839 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2027.338690 B = 8426.602666 C = 9861.253832 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.891 5.891 2 C 0.067 3.933 3 Si 0.910 3.090 4 H -0.275 1.275 5 H -0.282 1.282 6 H -0.271 1.271 7 C -0.539 4.539 8 H 0.071 0.929 9 C 0.249 3.751 10 N -0.304 5.304 11 C 0.123 3.877 12 C -0.261 4.261 13 C 0.246 3.754 14 N -0.293 5.293 15 N -0.339 5.339 16 C 0.122 3.878 17 N -0.292 5.292 18 N -0.301 5.301 19 C 0.184 3.816 20 C 0.126 3.874 21 C 0.034 3.966 22 C -0.143 4.143 23 C 0.087 3.913 24 N -0.484 5.484 25 C 0.087 3.913 26 C -0.111 4.111 27 N -0.248 5.248 28 H 0.271 0.729 29 H 0.055 0.945 30 H 0.063 0.937 31 H 0.187 0.813 32 H 0.129 0.871 33 H 0.215 0.785 34 H 0.218 0.782 35 H 0.137 0.863 36 H 0.155 0.845 37 H 0.151 0.849 38 H 0.147 0.853 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.003 -11.014 0.946 12.134 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.528 5.528 2 C -0.137 4.137 3 Si 0.737 3.263 4 H -0.201 1.201 5 H -0.208 1.208 6 H -0.196 1.196 7 C -0.577 4.577 8 H 0.089 0.911 9 C 0.132 3.868 10 N -0.079 5.079 11 C -0.034 4.034 12 C -0.277 4.277 13 C 0.044 3.956 14 N -0.099 5.099 15 N -0.115 5.115 16 C -0.166 4.166 17 N -0.133 5.133 18 N -0.141 5.141 19 C -0.103 4.103 20 C -0.043 4.043 21 C 0.024 3.976 22 C -0.164 4.164 23 C -0.070 4.070 24 N -0.193 5.193 25 C -0.070 4.070 26 C -0.133 4.133 27 N -0.068 5.068 28 H 0.080 0.920 29 H 0.073 0.927 30 H 0.081 0.919 31 H 0.204 0.796 32 H 0.146 0.854 33 H 0.231 0.769 34 H 0.234 0.766 35 H 0.155 0.845 36 H 0.172 0.828 37 H 0.168 0.832 38 H 0.165 0.835 Dipole moment (debyes) X Y Z Total from point charges 6.392 -11.498 -0.221 13.158 hybrid contribution -1.430 1.958 1.095 2.661 sum 4.962 -9.540 0.874 10.789 Atomic orbital electron populations 1.69893 1.06092 1.28147 1.48662 1.24923 0.95014 0.99707 0.94046 0.86285 0.79651 0.81756 0.78657 1.20097 1.20786 1.19583 1.21145 0.94016 0.88962 1.53624 0.91078 1.20069 0.85493 0.81025 1.00177 1.49546 1.22661 1.18852 1.16805 1.22996 0.97182 0.88180 0.95070 1.19211 1.05645 0.99929 1.02951 1.24229 0.87436 0.90430 0.93531 1.76344 1.18068 0.95428 1.20057 1.48026 1.48297 1.09466 1.05699 1.26959 1.05735 0.98558 0.85364 1.74219 1.17546 1.02950 1.18556 1.74352 1.19720 1.25379 0.94670 1.26559 1.01914 0.79861 1.01980 1.21762 0.95394 0.93145 0.93983 1.17984 0.91397 0.95934 0.92275 1.22256 1.00041 1.00049 0.94020 1.22577 0.89597 0.94589 1.00215 1.67583 1.27760 1.14603 1.09392 1.22535 0.97192 0.97616 0.89657 1.22381 0.92821 0.95780 1.02284 1.77597 1.00296 1.15986 1.12967 0.91960 0.92726 0.91904 0.79602 0.85422 0.76886 0.76587 0.84467 0.82797 0.83186 0.83545 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -22.79 13.29 55.43 0.74 -22.05 16 2 C 0.07 1.67 5.46 -17.82 -0.10 1.57 16 3 Si 0.91 19.59 29.54 -169.99 -5.02 14.57 16 4 H -0.28 -5.95 7.11 56.52 0.40 -5.55 16 5 H -0.28 -5.98 7.11 56.52 0.40 -5.58 16 6 H -0.27 -5.84 7.11 56.52 0.40 -5.44 16 7 C -0.54 -13.14 9.21 -34.44 -0.32 -13.46 16 8 H 0.07 1.81 7.81 -52.49 -0.41 1.40 16 9 C 0.25 5.21 6.21 -5.19 -0.03 5.18 16 10 N -0.30 -5.45 3.63 -61.98 -0.23 -5.68 16 11 C 0.12 1.63 11.40 -16.52 -0.19 1.44 16 12 C -0.26 -3.38 6.27 -103.02 -0.65 -4.03 16 13 C 0.25 2.47 10.60 -14.72 -0.16 2.32 16 14 N -0.29 -3.23 6.58 32.13 0.21 -3.02 16 15 N -0.34 -3.76 3.67 -14.75 -0.05 -3.82 16 16 C 0.12 1.32 12.41 -89.14 -1.11 0.22 16 17 N -0.29 -4.06 12.20 29.86 0.36 -3.70 16 18 N -0.30 -4.23 12.20 29.86 0.36 -3.87 16 19 C 0.18 2.13 13.05 -89.13 -1.16 0.97 16 20 C 0.13 1.98 6.98 -80.56 -0.56 1.42 16 21 C 0.03 0.50 5.73 -104.60 -0.60 -0.10 16 22 C -0.14 -1.92 9.88 -39.09 -0.39 -2.31 16 23 C 0.09 1.08 11.17 -17.61 -0.20 0.88 16 24 N -0.48 -6.51 10.35 -13.35 -0.14 -6.65 16 25 C 0.09 1.08 11.17 -17.61 -0.20 0.89 16 26 C -0.11 -1.44 7.69 -39.09 -0.30 -1.74 16 27 N -0.25 -4.67 12.30 34.57 0.43 -4.24 16 28 H 0.27 6.59 8.31 -40.82 -0.34 6.25 16 29 H 0.05 1.23 8.14 -51.93 -0.42 0.81 16 30 H 0.06 1.26 8.05 -51.93 -0.42 0.84 16 31 H 0.19 1.63 8.06 -52.48 -0.42 1.21 16 32 H 0.13 0.87 7.88 -52.48 -0.41 0.46 16 33 H 0.21 1.50 8.06 -52.48 -0.42 1.08 16 34 H 0.22 1.89 8.06 -52.49 -0.42 1.46 16 35 H 0.14 1.79 8.06 -52.48 -0.42 1.37 16 36 H 0.15 1.48 8.06 -52.49 -0.42 1.05 16 37 H 0.15 1.56 8.06 -52.49 -0.42 1.14 16 38 H 0.15 1.85 5.63 -52.49 -0.30 1.55 16 LS Contribution 346.47 15.07 5.22 5.22 Total: -1.00 -30.25 346.47 -7.69 -37.94 By element: Atomic # 1 Polarization: 5.68 SS G_CDS: -3.63 Total: 2.05 kcal Atomic # 6 Polarization: -0.81 SS G_CDS: -5.95 Total: -6.76 kcal Atomic # 7 Polarization: -54.71 SS G_CDS: 1.68 Total: -53.03 kcal Atomic # 14 Polarization: 19.59 SS G_CDS: -5.02 Total: 14.57 kcal Total LS contribution 5.22 Total: 5.22 kcal Total: -30.25 -7.69 -37.94 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001320982021.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 285.414 kcal (2) G-P(sol) polarization free energy of solvation -30.246 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 255.168 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.695 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.941 kcal (6) G-S(sol) free energy of system = (1) + (5) 247.473 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds