Wall clock time and date at job start Tue Mar 31 2020 13:40:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86793 * 119.99804 * 2 1 4 4 H 1.48505 * 109.47430 * 270.00249 * 3 2 1 5 5 H 1.48499 * 109.47249 * 30.00341 * 3 2 1 6 6 H 1.48498 * 109.47168 * 150.00112 * 3 2 1 7 7 C 1.37874 * 120.00130 * 180.02562 * 2 1 3 8 8 H 1.07990 * 120.00205 * 180.02562 * 7 2 1 9 9 C 1.50702 * 120.00030 * 359.97438 * 7 2 1 10 10 N 1.46496 * 109.47157 * 180.02562 * 9 7 2 11 11 C 1.34541 * 125.20575 * 124.98053 * 10 9 7 12 12 C 1.37822 * 107.87992 * 179.71819 * 11 10 9 13 13 C 1.47298 * 126.78219 * 180.25080 * 12 11 10 14 14 N 1.29830 * 120.00406 * 180.19797 * 13 12 11 15 15 N 1.40104 * 120.00154 * 180.02562 * 14 13 12 16 16 C 1.36266 * 127.09566 * 314.68548 * 15 14 13 17 17 N 1.30627 * 107.21443 * 179.89610 * 16 15 14 18 18 N 1.28552 * 109.87998 * 0.38248 * 17 16 15 19 19 C 1.30631 * 109.87817 * 359.75806 * 18 17 16 20 20 C 1.46552 * 106.44154 * 0.42390 * 12 11 10 21 21 C 1.48223 * 126.48680 * 179.83320 * 20 12 11 22 22 C 1.39830 * 120.91471 * 144.71024 * 21 20 12 23 23 C 1.37947 * 119.01816 * 179.97438 * 22 21 20 24 24 N 1.31944 * 120.88484 * 0.02562 * 23 22 21 25 25 C 1.31936 * 122.01965 * 359.97438 * 24 23 22 26 26 C 1.37952 * 120.88704 * 359.97438 * 25 24 23 27 27 N 1.31487 * 107.03513 * 359.56851 * 20 12 11 28 28 H 0.97003 * 120.00311 * 359.97438 * 1 2 3 29 29 H 1.09004 * 109.47284 * 60.00514 * 9 7 2 30 30 H 1.08998 * 109.47098 * 300.00214 * 9 7 2 31 31 H 1.08006 * 126.05888 * 0.02562 * 11 10 9 32 32 H 1.08006 * 119.99773 * 0.20506 * 13 12 11 33 33 H 1.08009 * 126.39528 * 0.03868 * 16 15 14 34 34 H 1.07996 * 126.39014 * 180.02562 * 19 18 17 35 35 H 1.08004 * 120.49202 * 359.95823 * 22 21 20 36 36 H 1.07996 * 119.56232 * 180.02562 * 23 22 21 37 37 H 1.07994 * 119.55882 * 179.97438 * 25 24 23 38 38 H 1.07997 * 120.48999 * 179.97438 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4965 2.0465 -1.4001 5 1 1.4465 2.6526 0.7001 6 1 3.5466 1.4402 0.7000 7 6 2.0045 -1.1940 -0.0005 8 1 3.0845 -1.1940 -0.0001 9 6 1.2511 -2.4991 -0.0005 10 7 2.2031 -3.6126 -0.0005 11 6 2.2281 -4.6117 0.9002 12 6 3.2579 -5.4622 0.5602 13 6 3.6524 -6.6949 1.2634 14 7 4.6525 -7.3991 0.8281 15 7 5.0273 -8.5718 1.4967 16 6 5.1669 -8.7424 2.8414 17 7 5.5262 -9.9827 3.0385 18 7 5.6276 -10.5928 1.9115 19 6 5.3334 -9.7755 0.9359 20 6 3.8857 -4.8958 -0.6368 21 6 5.0432 -5.4560 -1.3739 22 6 5.1286 -5.3492 -2.7655 23 6 6.2236 -5.8842 -3.4118 24 7 7.1805 -6.4898 -2.7347 25 6 7.1387 -6.6121 -1.4217 26 6 6.0803 -6.1049 -0.6966 27 7 3.2243 -3.7996 -0.9365 28 1 -0.4851 0.8400 0.0004 29 1 0.6241 -2.5568 -0.8904 30 1 0.6248 -2.5571 0.8896 31 1 1.5567 -4.7293 1.7380 32 1 3.1095 -7.0131 2.1413 33 1 5.0076 -7.9927 3.6025 34 1 5.3324 -10.0101 -0.1183 35 1 4.3486 -4.8554 -3.3262 36 1 6.2987 -5.8063 -4.4863 37 1 7.9437 -7.1159 -0.9076 38 1 6.0524 -6.2089 0.3780 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001320982021.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:40:38 Heat of formation + Delta-G solvation = 232.429897 kcal Electronic energy + Delta-G solvation = -25457.713902 eV Core-core repulsion = 21725.626552 eV Total energy + Delta-G solvation = -3732.087350 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 323.119 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -43.86330 -42.08848 -40.72879 -38.00783 -35.87279 -34.57410 -33.55015 -32.45893 -32.07308 -31.56729 -30.89653 -28.91940 -25.85602 -25.59961 -24.39655 -23.92661 -23.14364 -22.67973 -21.51619 -20.75198 -19.10578 -18.68132 -18.24482 -17.23547 -17.08056 -17.01006 -16.55147 -16.35324 -16.26680 -15.94765 -15.61957 -15.21796 -14.85029 -14.69393 -14.54925 -14.23666 -13.99487 -13.65315 -13.43577 -13.04697 -13.00821 -12.77044 -12.58710 -12.31009 -12.10895 -11.81397 -11.68087 -11.41182 -11.19910 -10.79575 -10.72070 -10.47846 -10.41748 -10.07799 -9.92457 -9.22240 -8.38017 -6.50240 -0.28116 0.11533 0.26034 0.89106 1.04390 1.26603 1.36510 1.40139 1.48068 1.62657 1.83810 1.98460 2.32022 2.93545 2.97093 3.11042 3.32363 3.58182 3.60568 3.64045 3.78910 4.03992 4.15447 4.17838 4.22642 4.31060 4.37855 4.47457 4.63243 4.72928 4.82462 4.88717 4.94385 5.01744 5.06494 5.25655 5.37545 5.44616 5.54028 5.76602 5.76936 5.99745 6.57146 6.69352 6.76181 7.03599 7.20392 7.65906 8.69843 Molecular weight = 323.12amu Principal moments of inertia in cm(-1) A = 0.013808 B = 0.003322 C = 0.002839 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2027.338690 B = 8426.602666 C = 9861.253832 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.916 5.916 2 C 0.026 3.974 3 Si 0.961 3.039 4 H -0.278 1.278 5 H -0.274 1.274 6 H -0.272 1.272 7 C -0.549 4.549 8 H 0.053 0.947 9 C 0.265 3.735 10 N -0.333 5.333 11 C 0.135 3.865 12 C -0.254 4.254 13 C 0.256 3.744 14 N -0.299 5.299 15 N -0.340 5.340 16 C 0.136 3.864 17 N -0.331 5.331 18 N -0.335 5.335 19 C 0.188 3.812 20 C 0.121 3.879 21 C 0.016 3.984 22 C -0.153 4.153 23 C 0.089 3.911 24 N -0.497 5.497 25 C 0.087 3.913 26 C -0.106 4.106 27 N -0.303 5.303 28 H 0.273 0.727 29 H 0.029 0.971 30 H 0.074 0.926 31 H 0.233 0.767 32 H 0.171 0.829 33 H 0.251 0.749 34 H 0.238 0.762 35 H 0.133 0.867 36 H 0.180 0.820 37 H 0.172 0.828 38 H 0.153 0.847 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.546 -11.783 2.081 13.188 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.554 5.554 2 C -0.175 4.175 3 Si 0.787 3.213 4 H -0.203 1.203 5 H -0.199 1.199 6 H -0.197 1.197 7 C -0.587 4.587 8 H 0.071 0.929 9 C 0.147 3.853 10 N -0.108 5.108 11 C -0.020 4.020 12 C -0.270 4.270 13 C 0.053 3.947 14 N -0.105 5.105 15 N -0.115 5.115 16 C -0.153 4.153 17 N -0.171 5.171 18 N -0.174 5.174 19 C -0.101 4.101 20 C -0.048 4.048 21 C 0.006 3.994 22 C -0.174 4.174 23 C -0.067 4.067 24 N -0.207 5.207 25 C -0.069 4.069 26 C -0.127 4.127 27 N -0.123 5.123 28 H 0.082 0.918 29 H 0.047 0.953 30 H 0.092 0.908 31 H 0.249 0.751 32 H 0.188 0.812 33 H 0.266 0.734 34 H 0.254 0.746 35 H 0.151 0.849 36 H 0.197 0.803 37 H 0.189 0.811 38 H 0.170 0.830 Dipole moment (debyes) X Y Z Total from point charges 6.952 -12.304 0.925 14.162 hybrid contribution -1.512 2.084 0.717 2.673 sum 5.440 -10.220 1.642 11.693 Atomic orbital electron populations 1.69952 1.06973 1.28797 1.49689 1.25571 0.95694 1.02303 0.93961 0.85493 0.78586 0.78902 0.78367 1.20331 1.19880 1.19710 1.21344 0.93388 0.90933 1.53048 0.92912 1.19559 0.85516 0.80985 0.99269 1.49137 1.23211 1.19847 1.18650 1.23755 0.97282 0.86196 0.94745 1.19387 1.04931 1.00713 1.01941 1.24309 0.87401 0.88810 0.94208 1.76323 1.18579 0.95401 1.20192 1.48033 1.48393 1.09279 1.05812 1.27618 1.03547 0.98255 0.85843 1.74155 1.19413 1.04536 1.18979 1.74291 1.21188 1.26608 0.95353 1.26958 1.00819 0.79730 1.02551 1.22171 0.95229 0.92547 0.94840 1.18172 0.91731 0.96746 0.92761 1.22337 1.00538 1.00527 0.94028 1.22951 0.88776 0.93599 1.01403 1.67659 1.28075 1.15031 1.09940 1.22890 0.97447 0.97093 0.89505 1.22403 0.92437 0.95426 1.02470 1.77500 1.01833 1.18140 1.14799 0.91805 0.95345 0.90835 0.75080 0.81192 0.73356 0.74558 0.84916 0.80291 0.81089 0.82986 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -47.22 13.29 21.45 0.28 -46.93 16 2 C 0.03 1.30 5.46 84.65 0.46 1.77 16 3 Si 0.96 40.34 29.54 68.60 2.03 42.37 16 4 H -0.28 -11.65 7.11 99.48 0.71 -10.95 16 5 H -0.27 -11.02 7.11 99.48 0.71 -10.32 16 6 H -0.27 -11.36 7.11 99.48 0.71 -10.65 16 7 C -0.55 -27.24 9.21 25.60 0.24 -27.01 16 8 H 0.05 2.76 7.81 -2.92 -0.02 2.73 16 9 C 0.26 11.27 6.21 85.63 0.53 11.80 16 10 N -0.33 -11.92 3.63 -350.00 -1.27 -13.19 16 11 C 0.13 3.27 11.40 84.18 0.96 4.23 16 12 C -0.25 -5.99 6.27 -18.82 -0.12 -6.11 16 13 C 0.26 4.16 10.60 87.37 0.93 5.09 16 14 N -0.30 -5.64 6.58 -52.27 -0.34 -5.99 16 15 N -0.34 -6.48 3.67 -200.58 -0.74 -7.22 16 16 C 0.14 2.52 12.41 179.83 2.23 4.75 16 17 N -0.33 -8.63 12.20 -59.45 -0.73 -9.35 16 18 N -0.33 -8.97 12.20 -59.45 -0.73 -9.69 16 19 C 0.19 3.93 13.05 179.83 2.35 6.28 16 20 C 0.12 3.75 6.98 44.02 0.31 4.06 16 21 C 0.02 0.45 5.73 -19.85 -0.11 0.34 16 22 C -0.15 -4.11 9.88 22.59 0.22 -3.89 16 23 C 0.09 2.11 11.17 84.61 0.95 3.06 16 24 N -0.50 -12.57 10.35 -196.16 -2.03 -14.60 16 25 C 0.09 2.01 11.17 84.61 0.95 2.95 16 26 C -0.11 -2.56 7.69 22.59 0.17 -2.39 16 27 N -0.30 -11.59 12.30 -44.55 -0.55 -12.14 16 28 H 0.27 13.32 8.31 -92.71 -0.77 12.55 16 29 H 0.03 1.34 8.14 -2.39 -0.02 1.32 16 30 H 0.07 2.93 8.05 -2.39 -0.02 2.91 16 31 H 0.23 3.12 8.06 -2.91 -0.02 3.10 16 32 H 0.17 1.37 7.88 -2.91 -0.02 1.35 16 33 H 0.25 2.39 8.06 -2.91 -0.02 2.37 16 34 H 0.24 3.61 8.06 -2.91 -0.02 3.58 16 35 H 0.13 3.60 8.06 -2.91 -0.02 3.57 16 36 H 0.18 3.16 8.06 -2.91 -0.02 3.13 16 37 H 0.17 3.12 8.06 -2.91 -0.02 3.10 16 38 H 0.15 3.48 5.63 -2.91 -0.02 3.46 16 Total: -1.00 -67.65 346.47 7.10 -60.56 By element: Atomic # 1 Polarization: 10.15 SS G_CDS: 1.11 Total: 11.26 kcal Atomic # 6 Polarization: -5.13 SS G_CDS: 10.06 Total: 4.93 kcal Atomic # 7 Polarization: -113.02 SS G_CDS: -6.09 Total: -119.12 kcal Atomic # 14 Polarization: 40.34 SS G_CDS: 2.03 Total: 42.37 kcal Total: -67.65 7.10 -60.56 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001320982021.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 292.988 kcal (2) G-P(sol) polarization free energy of solvation -67.655 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 225.333 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.097 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.558 kcal (6) G-S(sol) free energy of system = (1) + (5) 232.430 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds