Wall clock time and date at job start Tue Mar 31 2020 14:19:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.38089 * 120.02539 * 2 1 4 4 C 1.38501 * 120.04804 * 180.29777 * 3 2 1 5 5 F 1.35105 * 119.94434 * 179.69962 * 4 3 2 6 6 C 1.38533 * 120.10929 * 359.67711 * 4 3 2 7 7 C 1.38041 * 120.04966 * 0.02562 * 6 4 3 8 8 C 1.38937 * 120.03055 * 179.67455 * 2 1 3 9 9 N 1.39841 * 120.04743 * 0.02562 * 8 2 1 10 10 C 1.37120 * 120.00610 * 95.46778 * 9 8 2 11 11 H 1.08004 * 119.99292 * 45.26527 * 10 9 8 12 12 C 1.38878 * 120.00746 * 225.26662 * 10 9 8 13 13 N 1.31425 * 120.00540 * 204.80955 * 12 10 9 14 14 Si 1.86807 * 119.99449 * 24.80482 * 12 10 9 15 15 H 1.48503 * 109.47097 * 91.08323 * 14 12 10 16 16 H 1.48497 * 109.46754 * 211.07920 * 14 12 10 17 17 H 1.48499 * 109.47091 * 331.08218 * 14 12 10 18 18 C 1.34780 * 119.99681 * 275.47067 * 9 8 2 19 19 O 1.21278 * 119.99966 * 5.22282 * 18 9 8 20 20 C 1.50699 * 120.00149 * 185.22565 * 18 9 8 21 21 O 1.42895 * 109.47057 * 174.32289 * 20 18 9 22 22 C 1.42909 * 113.99705 * 180.02562 * 21 20 18 23 23 H 1.08998 * 110.56333 * 328.77106 * 22 21 20 24 24 C 1.54509 * 110.50959 * 206.09631 * 22 21 20 25 25 C 1.54477 * 104.06374 * 241.35671 * 24 22 21 26 26 O 1.44425 * 104.80374 * 23.97906 * 25 24 22 27 27 C 1.44427 * 105.27280 * 319.48848 * 26 25 24 28 28 H 1.09007 * 109.46789 * 272.95249 * 1 2 3 29 29 H 1.08995 * 109.47036 * 32.95362 * 1 2 3 30 30 H 1.08993 * 109.46951 * 152.95489 * 1 2 3 31 31 H 1.08001 * 119.97853 * 359.97438 * 3 2 1 32 32 H 1.08001 * 119.97849 * 180.02562 * 6 4 3 33 33 H 1.08002 * 120.02846 * 180.02562 * 7 6 4 34 34 H 0.97002 * 120.00020 * 179.97438 * 13 12 10 35 35 H 1.08999 * 109.46668 * 54.32467 * 20 18 9 36 36 H 1.08997 * 109.46980 * 294.32572 * 20 18 9 37 37 H 1.09002 * 110.50975 * 0.02562 * 24 22 21 38 38 H 1.09002 * 110.51021 * 122.57340 * 24 22 21 39 39 H 1.08996 * 110.37197 * 142.81028 * 25 24 22 40 40 H 1.09001 * 110.37155 * 265.03644 * 25 24 22 41 41 H 1.09001 * 110.37217 * 281.68005 * 27 26 25 42 42 H 1.09003 * 110.37054 * 159.34329 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1980 1.1956 0.0000 4 6 3.5830 1.1961 -0.0062 5 9 4.2569 2.3671 -0.0124 6 6 4.2784 -0.0020 -0.0057 7 6 3.5920 -1.1996 0.0005 8 6 2.2023 -1.2028 0.0068 9 7 1.5048 -2.4148 0.0132 10 6 1.2612 -3.0720 -1.1654 11 1 2.0503 -3.1837 -1.8943 12 6 0.0001 -3.5940 -1.4218 13 7 -0.1375 -4.6009 -2.2551 14 14 -1.5008 -2.8649 -0.5820 15 1 -2.0706 -1.7895 -1.4329 16 1 -2.5188 -3.9267 -0.3785 17 1 -1.1062 -2.2988 0.7330 18 6 1.0717 -2.9370 1.1778 19 8 1.2029 -2.3117 2.2087 20 6 0.4247 -4.2978 1.1992 21 8 0.1744 -4.6851 2.5517 22 6 -0.4406 -5.9682 2.6845 23 1 -1.0828 -6.1754 1.8286 24 6 -1.2483 -6.0479 3.9992 25 6 -0.5682 -7.1878 4.7892 26 8 0.7745 -7.2527 4.2612 27 6 0.6320 -7.0695 2.8357 28 1 -0.3633 0.0529 1.0264 29 1 -0.3633 0.8623 -0.5590 30 1 -0.3633 -0.9152 -0.4672 31 1 1.6580 2.1309 -0.0004 32 1 5.3584 0.0009 -0.0102 33 1 4.1346 -2.1335 0.0013 34 1 -1.0184 -4.9657 -2.4339 35 1 1.0894 -5.0235 0.7305 36 1 -0.5170 -4.2610 0.6515 37 1 -1.1789 -5.1084 4.5476 38 1 -2.2904 -6.2921 3.7930 39 1 -0.5466 -6.9519 5.8531 40 1 -1.0898 -8.1300 4.6208 41 1 0.2956 -7.9939 2.3662 42 1 1.5757 -6.7426 2.3990 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001331655978.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:19:46 Heat of formation + Delta-G solvation = -111.238817 kcal Electronic energy + Delta-G solvation = -28261.085364 eV Core-core repulsion = 24122.281038 eV Total energy + Delta-G solvation = -4138.804327 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 323.137 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -48.57043 -40.12862 -39.43619 -37.94777 -36.36580 -34.91378 -32.54607 -32.27686 -31.33773 -29.55473 -28.65759 -27.36896 -26.43221 -24.78702 -22.88192 -22.24371 -21.39979 -21.05101 -19.84664 -17.93918 -17.15482 -16.95536 -16.57766 -16.44943 -16.07695 -15.85903 -15.42617 -15.26678 -14.84854 -14.67988 -14.15991 -13.95857 -13.67876 -13.44080 -13.18404 -13.00227 -12.92293 -12.84660 -12.43492 -12.39241 -12.08344 -11.87999 -11.78560 -11.50463 -11.38175 -11.25384 -11.05103 -10.76636 -10.69245 -10.48045 -9.99140 -9.81923 -9.41650 -9.07602 -8.87467 -8.54385 -8.11761 -7.96854 -6.79963 -4.46916 1.54605 1.61966 2.84359 2.98137 3.06451 3.43093 3.50998 3.82169 3.98909 4.00318 4.46493 4.57819 4.59370 4.67124 4.90427 5.07319 5.10016 5.11285 5.15076 5.44084 5.47239 5.49954 5.63848 5.69830 5.70539 5.74097 5.79346 5.91330 5.92351 5.97037 6.04826 6.08110 6.11497 6.21871 6.44482 6.52974 6.60650 6.76379 6.99890 7.12075 7.33406 7.45961 7.68879 8.22070 8.65273 8.96488 9.43035 10.28496 Molecular weight = 323.14amu Principal moments of inertia in cm(-1) A = 0.014905 B = 0.004340 C = 0.003834 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1878.090982 B = 6450.799879 C = 7300.706888 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.118 4.118 2 C -0.050 4.050 3 C -0.151 4.151 4 C 0.083 3.917 5 F -0.148 7.148 6 C -0.153 4.153 7 C -0.085 4.085 8 C 0.165 3.835 9 N -0.440 5.440 10 C -0.351 4.351 11 H 0.108 0.892 12 C 0.074 3.926 13 N -0.840 5.840 14 Si 0.843 3.157 15 H -0.271 1.271 16 H -0.281 1.281 17 H -0.249 1.249 18 C 0.503 3.497 19 O -0.555 6.555 20 C 0.061 3.939 21 O -0.353 6.353 22 C 0.052 3.948 23 H 0.077 0.923 24 C -0.154 4.154 25 C 0.047 3.953 26 O -0.370 6.370 27 C 0.024 3.976 28 H 0.073 0.927 29 H 0.066 0.934 30 H 0.072 0.928 31 H 0.131 0.869 32 H 0.132 0.868 33 H 0.134 0.866 34 H 0.280 0.720 35 H 0.089 0.911 36 H 0.061 0.939 37 H 0.092 0.908 38 H 0.084 0.916 39 H 0.092 0.908 40 H 0.058 0.942 41 H 0.067 0.933 42 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.316 -0.650 4.746 4.968 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C -0.052 4.052 3 C -0.170 4.170 4 C 0.064 3.936 5 F -0.127 7.127 6 C -0.173 4.173 7 C -0.104 4.104 8 C 0.075 3.925 9 N -0.162 5.162 10 C -0.476 4.476 11 H 0.125 0.875 12 C -0.135 4.135 13 N -0.473 5.473 14 Si 0.670 3.330 15 H -0.197 1.197 16 H -0.208 1.208 17 H -0.174 1.174 18 C 0.293 3.707 19 O -0.435 6.435 20 C -0.018 4.018 21 O -0.271 6.271 22 C -0.007 4.007 23 H 0.095 0.905 24 C -0.192 4.192 25 C -0.030 4.030 26 O -0.288 6.288 27 C -0.053 4.053 28 H 0.092 0.908 29 H 0.085 0.915 30 H 0.091 0.909 31 H 0.149 0.851 32 H 0.150 0.850 33 H 0.151 0.849 34 H 0.091 0.909 35 H 0.107 0.893 36 H 0.079 0.921 37 H 0.110 0.890 38 H 0.102 0.898 39 H 0.110 0.890 40 H 0.077 0.923 41 H 0.085 0.915 42 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges -1.092 -0.383 5.437 5.559 hybrid contribution -1.169 0.361 -0.432 1.298 sum -2.262 -0.023 5.005 5.493 Atomic orbital electron populations 1.21002 0.91149 1.02926 1.02371 1.19947 0.96420 0.91686 0.97119 1.20775 0.92094 0.98590 1.05537 1.17585 0.90013 0.80989 1.04993 1.91445 1.80505 1.46386 1.94314 1.20874 1.00281 0.90883 1.05229 1.21155 0.93332 0.97783 0.98130 1.17797 0.90663 0.86412 0.97662 1.41190 1.52250 1.16601 1.06189 1.18994 0.97870 1.33973 0.96786 0.87469 1.25537 0.97665 0.94757 0.95564 1.69754 1.25141 1.18864 1.33544 0.87615 0.83508 0.80171 0.81755 1.19748 1.20798 1.17350 1.19964 0.80717 0.86956 0.83040 1.90606 1.58341 1.61929 1.32627 1.22412 1.00013 0.96309 0.83042 1.88039 1.80660 1.32981 1.25401 1.23509 0.93859 0.84911 0.98408 0.90542 1.23060 0.99182 1.01129 0.95807 1.23379 0.83589 0.96998 0.99055 1.89144 1.25937 1.93788 1.19973 1.24007 1.01123 0.97325 0.82856 0.90825 0.91550 0.90905 0.85089 0.84989 0.84853 0.90938 0.89279 0.92131 0.88963 0.89774 0.88998 0.92349 0.91468 0.88129 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.28 9.18 36.01 0.33 -1.95 16 2 C -0.05 -1.00 5.90 -104.42 -0.62 -1.61 16 3 C -0.15 -2.59 9.69 -39.54 -0.38 -2.98 16 4 C 0.08 1.40 7.30 -39.38 -0.29 1.11 16 5 F -0.15 -2.36 17.27 2.25 0.04 -2.32 16 6 C -0.15 -2.52 10.02 -39.54 -0.40 -2.91 16 7 C -0.08 -1.59 9.97 -39.38 -0.39 -1.98 16 8 C 0.16 3.53 4.40 -83.67 -0.37 3.16 16 9 N -0.44 -10.22 1.38 -58.97 -0.08 -10.30 16 10 C -0.35 -8.51 9.18 -14.95 -0.14 -8.65 16 11 H 0.11 2.74 8.06 -52.48 -0.42 2.32 16 12 C 0.07 1.78 4.15 -17.49 -0.07 1.71 16 13 N -0.84 -20.84 13.96 55.49 0.77 -20.06 16 14 Si 0.84 18.86 20.68 -169.99 -3.52 15.34 16 15 H -0.27 -5.98 7.11 56.52 0.40 -5.58 16 16 H -0.28 -6.10 7.11 56.52 0.40 -5.69 16 17 H -0.25 -5.79 5.00 56.52 0.28 -5.50 16 18 C 0.50 12.14 5.17 -10.98 -0.06 12.08 16 19 O -0.56 -14.67 16.49 -14.29 -0.24 -14.90 16 20 C 0.06 1.33 4.23 36.01 0.15 1.48 16 21 O -0.35 -7.33 9.52 -55.08 -0.52 -7.85 16 22 C 0.05 0.84 3.58 -25.16 -0.09 0.75 16 23 H 0.08 1.14 7.87 -51.93 -0.41 0.74 16 24 C -0.15 -2.03 6.90 -25.16 -0.17 -2.21 16 25 C 0.05 0.56 7.63 37.93 0.29 0.85 16 26 O -0.37 -5.79 11.65 -35.23 -0.41 -6.20 16 27 C 0.02 0.35 7.38 37.93 0.28 0.63 16 28 H 0.07 1.42 8.14 -51.92 -0.42 0.99 16 29 H 0.07 1.06 8.10 -51.93 -0.42 0.64 16 30 H 0.07 1.56 2.20 -51.93 -0.11 1.45 16 31 H 0.13 1.90 8.06 -52.49 -0.42 1.48 16 32 H 0.13 1.77 8.06 -52.49 -0.42 1.35 16 33 H 0.13 2.33 8.06 -52.49 -0.42 1.91 16 34 H 0.28 6.48 8.31 -40.82 -0.34 6.14 16 35 H 0.09 1.87 8.02 -51.93 -0.42 1.46 16 36 H 0.06 1.34 2.89 -51.93 -0.15 1.19 16 37 H 0.09 1.33 8.00 -51.93 -0.42 0.91 16 38 H 0.08 0.89 8.14 -51.93 -0.42 0.47 16 39 H 0.09 0.96 8.14 -51.93 -0.42 0.54 16 40 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 41 H 0.07 0.82 8.14 -51.93 -0.42 0.40 16 42 H 0.10 1.56 8.09 -51.93 -0.42 1.14 16 LS Contribution 341.23 15.07 5.14 5.14 Total: -1.00 -29.05 341.23 -6.14 -35.19 By element: Atomic # 1 Polarization: 11.87 SS G_CDS: -5.40 Total: 6.47 kcal Atomic # 6 Polarization: 1.41 SS G_CDS: -1.92 Total: -0.51 kcal Atomic # 7 Polarization: -31.06 SS G_CDS: 0.69 Total: -30.37 kcal Atomic # 8 Polarization: -27.78 SS G_CDS: -1.17 Total: -28.95 kcal Atomic # 9 Polarization: -2.36 SS G_CDS: 0.04 Total: -2.32 kcal Atomic # 14 Polarization: 18.86 SS G_CDS: -3.52 Total: 15.34 kcal Total LS contribution 5.14 Total: 5.14 kcal Total: -29.05 -6.14 -35.19 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001331655978.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -76.049 kcal (2) G-P(sol) polarization free energy of solvation -29.053 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -105.102 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.137 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.190 kcal (6) G-S(sol) free energy of system = (1) + (5) -111.239 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds