Wall clock time and date at job start Tue Mar 31 2020 14:19:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.38089 * 120.02539 * 2 1 4 4 C 1.38501 * 120.04804 * 180.29777 * 3 2 1 5 5 F 1.35105 * 119.94434 * 179.69962 * 4 3 2 6 6 C 1.38533 * 120.10929 * 359.67711 * 4 3 2 7 7 C 1.38041 * 120.04966 * 0.02562 * 6 4 3 8 8 C 1.38937 * 120.03055 * 179.67455 * 2 1 3 9 9 N 1.39841 * 120.04743 * 0.02562 * 8 2 1 10 10 C 1.37120 * 120.00610 * 95.46778 * 9 8 2 11 11 H 1.08004 * 119.99292 * 45.26527 * 10 9 8 12 12 C 1.38878 * 120.00746 * 225.26662 * 10 9 8 13 13 N 1.31425 * 120.00540 * 204.80955 * 12 10 9 14 14 Si 1.86807 * 119.99449 * 24.80482 * 12 10 9 15 15 H 1.48503 * 109.47097 * 91.08323 * 14 12 10 16 16 H 1.48497 * 109.46754 * 211.07920 * 14 12 10 17 17 H 1.48499 * 109.47091 * 331.08218 * 14 12 10 18 18 C 1.34780 * 119.99681 * 275.47067 * 9 8 2 19 19 O 1.21278 * 119.99966 * 5.22282 * 18 9 8 20 20 C 1.50699 * 120.00149 * 185.22565 * 18 9 8 21 21 O 1.42895 * 109.47057 * 174.32289 * 20 18 9 22 22 C 1.42909 * 113.99705 * 180.02562 * 21 20 18 23 23 H 1.08998 * 110.56333 * 328.77106 * 22 21 20 24 24 C 1.54509 * 110.50959 * 206.09631 * 22 21 20 25 25 C 1.54477 * 104.06374 * 241.35671 * 24 22 21 26 26 O 1.44425 * 104.80374 * 23.97906 * 25 24 22 27 27 C 1.44427 * 105.27280 * 319.48848 * 26 25 24 28 28 H 1.09007 * 109.46789 * 272.95249 * 1 2 3 29 29 H 1.08995 * 109.47036 * 32.95362 * 1 2 3 30 30 H 1.08993 * 109.46951 * 152.95489 * 1 2 3 31 31 H 1.08001 * 119.97853 * 359.97438 * 3 2 1 32 32 H 1.08001 * 119.97849 * 180.02562 * 6 4 3 33 33 H 1.08002 * 120.02846 * 180.02562 * 7 6 4 34 34 H 0.97002 * 120.00020 * 179.97438 * 13 12 10 35 35 H 1.08999 * 109.46668 * 54.32467 * 20 18 9 36 36 H 1.08997 * 109.46980 * 294.32572 * 20 18 9 37 37 H 1.09002 * 110.50975 * 0.02562 * 24 22 21 38 38 H 1.09002 * 110.51021 * 122.57340 * 24 22 21 39 39 H 1.08996 * 110.37197 * 142.81028 * 25 24 22 40 40 H 1.09001 * 110.37155 * 265.03644 * 25 24 22 41 41 H 1.09001 * 110.37217 * 281.68005 * 27 26 25 42 42 H 1.09003 * 110.37054 * 159.34329 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1980 1.1956 0.0000 4 6 3.5830 1.1961 -0.0062 5 9 4.2569 2.3671 -0.0124 6 6 4.2784 -0.0020 -0.0057 7 6 3.5920 -1.1996 0.0005 8 6 2.2023 -1.2028 0.0068 9 7 1.5048 -2.4148 0.0132 10 6 1.2612 -3.0720 -1.1654 11 1 2.0503 -3.1837 -1.8943 12 6 0.0001 -3.5940 -1.4218 13 7 -0.1375 -4.6009 -2.2551 14 14 -1.5008 -2.8649 -0.5820 15 1 -2.0706 -1.7895 -1.4329 16 1 -2.5188 -3.9267 -0.3785 17 1 -1.1062 -2.2988 0.7330 18 6 1.0717 -2.9370 1.1778 19 8 1.2029 -2.3117 2.2087 20 6 0.4247 -4.2978 1.1992 21 8 0.1744 -4.6851 2.5517 22 6 -0.4406 -5.9682 2.6845 23 1 -1.0828 -6.1754 1.8286 24 6 -1.2483 -6.0479 3.9992 25 6 -0.5682 -7.1878 4.7892 26 8 0.7745 -7.2527 4.2612 27 6 0.6320 -7.0695 2.8357 28 1 -0.3633 0.0529 1.0264 29 1 -0.3633 0.8623 -0.5590 30 1 -0.3633 -0.9152 -0.4672 31 1 1.6580 2.1309 -0.0004 32 1 5.3584 0.0009 -0.0102 33 1 4.1346 -2.1335 0.0013 34 1 -1.0184 -4.9657 -2.4339 35 1 1.0894 -5.0235 0.7305 36 1 -0.5170 -4.2610 0.6515 37 1 -1.1789 -5.1084 4.5476 38 1 -2.2904 -6.2921 3.7930 39 1 -0.5466 -6.9519 5.8531 40 1 -1.0898 -8.1300 4.6208 41 1 0.2956 -7.9939 2.3662 42 1 1.5757 -6.7426 2.3990 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001331655978.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:19:45 Heat of formation + Delta-G solvation = -128.658489 kcal Electronic energy + Delta-G solvation = -28261.840738 eV Core-core repulsion = 24122.281038 eV Total energy + Delta-G solvation = -4139.559701 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 323.137 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -49.88491 -41.79270 -40.65999 -39.47652 -37.83530 -36.75283 -34.30767 -33.77185 -32.54063 -31.07205 -29.82276 -28.88431 -28.00765 -26.59524 -24.03928 -23.65122 -22.87506 -22.25033 -21.56637 -19.66380 -18.72569 -18.39653 -18.07860 -17.78501 -17.47612 -17.35369 -16.73985 -16.58569 -16.33693 -16.11972 -15.77521 -15.43683 -15.22024 -15.04555 -14.75325 -14.56362 -14.33708 -14.28325 -13.88722 -13.79265 -13.52400 -13.41050 -13.08486 -12.91558 -12.85761 -12.70801 -12.46109 -12.24036 -12.09914 -11.80365 -11.69582 -11.26386 -11.05535 -10.74424 -10.45840 -9.97628 -9.89611 -9.46651 -8.69849 -6.38275 0.09254 0.21569 1.04573 1.18441 1.25369 1.62892 1.88793 2.01639 2.54263 2.71450 2.93869 2.96976 3.20244 3.51160 3.71971 3.78518 3.80035 3.86760 3.99862 4.02135 4.10961 4.15992 4.28015 4.34588 4.40528 4.44057 4.49604 4.55254 4.56328 4.67288 4.77275 4.79604 4.86049 5.01818 5.02116 5.09274 5.16108 5.45177 5.56197 5.62399 5.68751 5.95063 6.09198 6.30961 6.76810 7.11461 7.60631 8.42260 Molecular weight = 323.14amu Principal moments of inertia in cm(-1) A = 0.014905 B = 0.004340 C = 0.003834 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1878.090982 B = 6450.799879 C = 7300.706888 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.119 4.119 2 C -0.069 4.069 3 C -0.144 4.144 4 C 0.088 3.912 5 F -0.138 7.138 6 C -0.141 4.141 7 C -0.095 4.095 8 C 0.121 3.879 9 N -0.434 5.434 10 C -0.354 4.354 11 H 0.087 0.913 12 C 0.057 3.943 13 N -0.862 5.862 14 Si 0.884 3.116 15 H -0.266 1.266 16 H -0.269 1.269 17 H -0.266 1.266 18 C 0.493 3.507 19 O -0.587 6.587 20 C 0.071 3.929 21 O -0.376 6.376 22 C 0.034 3.966 23 H 0.087 0.913 24 C -0.151 4.151 25 C 0.045 3.955 26 O -0.397 6.397 27 C 0.026 3.974 28 H 0.066 0.934 29 H 0.098 0.902 30 H 0.049 0.951 31 H 0.161 0.839 32 H 0.166 0.834 33 H 0.137 0.863 34 H 0.287 0.713 35 H 0.089 0.911 36 H 0.058 0.942 37 H 0.074 0.926 38 H 0.114 0.886 39 H 0.106 0.894 40 H 0.089 0.911 41 H 0.097 0.903 42 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.827 -0.232 5.039 5.365 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C -0.071 4.071 3 C -0.163 4.163 4 C 0.068 3.932 5 F -0.117 7.117 6 C -0.160 4.160 7 C -0.115 4.115 8 C 0.032 3.968 9 N -0.155 5.155 10 C -0.480 4.480 11 H 0.105 0.895 12 C -0.151 4.151 13 N -0.496 5.496 14 Si 0.711 3.289 15 H -0.193 1.193 16 H -0.195 1.195 17 H -0.192 1.192 18 C 0.284 3.716 19 O -0.470 6.470 20 C -0.008 4.008 21 O -0.295 6.295 22 C -0.024 4.024 23 H 0.105 0.895 24 C -0.189 4.189 25 C -0.031 4.031 26 O -0.316 6.316 27 C -0.051 4.051 28 H 0.085 0.915 29 H 0.117 0.883 30 H 0.067 0.933 31 H 0.179 0.821 32 H 0.183 0.817 33 H 0.155 0.845 34 H 0.098 0.902 35 H 0.106 0.894 36 H 0.076 0.924 37 H 0.093 0.907 38 H 0.133 0.867 39 H 0.124 0.876 40 H 0.107 0.893 41 H 0.115 0.885 42 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges -1.606 0.029 5.707 5.929 hybrid contribution -0.921 0.266 -0.518 1.089 sum -2.527 0.295 5.189 5.779 Atomic orbital electron populations 1.21004 0.91131 1.03135 1.02231 1.20073 0.96800 0.92059 0.98133 1.21015 0.92488 0.98759 1.04010 1.17648 0.90047 0.81369 1.04087 1.91476 1.80261 1.45821 1.94129 1.21159 1.01899 0.89779 1.03204 1.21270 0.92544 0.99093 0.98565 1.18211 0.91856 0.86290 1.00469 1.41128 1.51687 1.17214 1.05457 1.18819 0.97662 1.34734 0.96746 0.89485 1.25784 0.98886 0.94562 0.95911 1.69782 1.26072 1.19313 1.34475 0.86964 0.81751 0.79905 0.80318 1.19261 1.19521 1.19150 1.20392 0.80748 0.87605 0.82850 1.90559 1.59962 1.62927 1.33536 1.22205 0.99500 0.95151 0.83910 1.88019 1.81373 1.35603 1.24512 1.23954 0.94697 0.83343 1.00403 0.89463 1.23131 1.00614 1.00958 0.94156 1.23630 0.82060 0.97888 0.99498 1.89110 1.28288 1.93921 1.20299 1.24013 1.00030 0.98102 0.82954 0.91508 0.88292 0.93267 0.82143 0.81656 0.84530 0.90202 0.89352 0.92421 0.90706 0.86733 0.87607 0.89289 0.88463 0.89863 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -4.52 9.18 71.24 0.65 -3.87 16 2 C -0.07 -2.71 5.90 -19.73 -0.12 -2.83 16 3 C -0.14 -4.64 9.69 22.30 0.22 -4.43 16 4 C 0.09 2.73 7.30 22.40 0.16 2.89 16 5 F -0.14 -3.97 17.27 44.97 0.78 -3.19 16 6 C -0.14 -4.36 10.02 22.29 0.22 -4.14 16 7 C -0.10 -3.56 9.97 22.40 0.22 -3.34 16 8 C 0.12 5.26 4.40 38.21 0.17 5.42 16 9 N -0.43 -20.68 1.38 -458.88 -0.64 -21.31 16 10 C -0.35 -17.62 9.18 84.02 0.77 -16.85 16 11 H 0.09 4.62 8.06 -2.91 -0.02 4.60 16 12 C 0.06 2.76 4.15 84.91 0.35 3.11 16 13 N -0.86 -42.92 13.96 21.65 0.30 -42.62 16 14 Si 0.88 39.09 20.68 68.60 1.42 40.50 16 15 H -0.27 -11.42 7.11 99.48 0.71 -10.71 16 16 H -0.27 -11.19 7.11 99.48 0.71 -10.48 16 17 H -0.27 -12.51 5.00 99.48 0.50 -12.01 16 18 C 0.49 24.48 5.17 87.66 0.45 24.93 16 19 O -0.59 -32.01 16.49 15.95 0.26 -31.75 16 20 C 0.07 3.18 4.23 71.24 0.30 3.48 16 21 O -0.38 -15.94 9.52 -130.00 -1.24 -17.18 16 22 C 0.03 1.07 3.58 31.61 0.11 1.18 16 23 H 0.09 2.52 7.87 -2.39 -0.02 2.50 16 24 C -0.15 -3.75 6.90 31.61 0.22 -3.53 16 25 C 0.05 0.99 7.63 72.48 0.55 1.54 16 26 O -0.40 -12.03 11.65 -148.98 -1.74 -13.77 16 27 C 0.03 0.75 7.38 72.48 0.53 1.28 16 28 H 0.07 2.58 8.14 -2.38 -0.02 2.56 16 29 H 0.10 2.98 8.10 -2.39 -0.02 2.96 16 30 H 0.05 2.10 2.20 -2.39 -0.01 2.09 16 31 H 0.16 4.13 8.06 -2.91 -0.02 4.11 16 32 H 0.17 3.92 8.06 -2.91 -0.02 3.89 16 33 H 0.14 4.85 8.06 -2.91 -0.02 4.83 16 34 H 0.29 13.20 8.31 -92.71 -0.77 12.43 16 35 H 0.09 3.85 8.02 -2.39 -0.02 3.84 16 36 H 0.06 2.58 2.89 -2.39 -0.01 2.58 16 37 H 0.07 2.12 8.00 -2.39 -0.02 2.10 16 38 H 0.11 2.10 8.14 -2.39 -0.02 2.08 16 39 H 0.11 1.98 8.14 -2.39 -0.02 1.96 16 40 H 0.09 1.42 8.14 -2.39 -0.02 1.40 16 41 H 0.10 2.19 8.14 -2.39 -0.02 2.17 16 42 H 0.08 2.65 8.09 -2.39 -0.02 2.63 16 Total: -1.00 -63.76 341.23 4.82 -58.94 By element: Atomic # 1 Polarization: 24.68 SS G_CDS: 0.84 Total: 25.52 kcal Atomic # 6 Polarization: 0.03 SS G_CDS: 4.83 Total: 4.86 kcal Atomic # 7 Polarization: -63.60 SS G_CDS: -0.33 Total: -63.93 kcal Atomic # 8 Polarization: -59.98 SS G_CDS: -2.71 Total: -62.69 kcal Atomic # 9 Polarization: -3.97 SS G_CDS: 0.78 Total: -3.19 kcal Atomic # 14 Polarization: 39.09 SS G_CDS: 1.42 Total: 40.50 kcal Total: -63.76 4.82 -58.94 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001331655978.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -69.719 kcal (2) G-P(sol) polarization free energy of solvation -63.761 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -133.481 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.822 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.939 kcal (6) G-S(sol) free energy of system = (1) + (5) -128.658 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds