Wall clock time and date at job start Tue Mar 31 2020 14:19:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.38088 * 120.02671 * 2 1 4 4 C 1.38495 * 120.04930 * 180.25569 * 3 2 1 5 5 F 1.35108 * 119.94715 * 179.76511 * 4 3 2 6 6 C 1.38546 * 120.10820 * 359.73715 * 4 3 2 7 7 C 1.38043 * 120.04895 * 359.97438 * 6 4 3 8 8 C 1.38943 * 120.02830 * 179.72033 * 2 1 3 9 9 N 1.39839 * 120.04605 * 0.02562 * 8 2 1 10 10 C 1.37122 * 120.00266 * 89.72745 * 9 8 2 11 11 H 1.08001 * 120.00366 * 185.59223 * 10 9 8 12 12 C 1.38885 * 119.99823 * 5.58855 * 10 9 8 13 13 N 1.31428 * 119.99884 * 354.02287 * 12 10 9 14 14 Si 1.86802 * 120.00109 * 174.02697 * 12 10 9 15 15 H 1.48504 * 109.47006 * 0.02562 * 14 12 10 16 16 H 1.48505 * 109.46870 * 119.99908 * 14 12 10 17 17 H 1.48493 * 109.47200 * 240.00229 * 14 12 10 18 18 C 1.34778 * 119.99893 * 269.72184 * 9 8 2 19 19 O 1.21279 * 120.00030 * 5.39114 * 18 9 8 20 20 C 1.50703 * 119.99840 * 185.39139 * 18 9 8 21 21 O 1.42904 * 109.47151 * 174.94178 * 20 18 9 22 22 C 1.42894 * 113.99853 * 179.97438 * 21 20 18 23 23 H 1.08996 * 110.91492 * 32.12949 * 22 21 20 24 24 C 1.55451 * 110.92084 * 155.75368 * 22 21 20 25 25 C 1.54953 * 100.99034 * 152.22692 * 24 22 21 26 26 O 1.43647 * 105.13221 * 323.60166 * 25 24 22 27 27 C 1.43236 * 109.97410 * 24.43017 * 26 25 24 28 28 H 1.08999 * 109.47204 * 270.27911 * 1 2 3 29 29 H 1.09001 * 109.47039 * 30.28132 * 1 2 3 30 30 H 1.09003 * 109.47241 * 150.27760 * 1 2 3 31 31 H 1.07998 * 119.97499 * 359.97438 * 3 2 1 32 32 H 1.08000 * 119.97476 * 180.02562 * 6 4 3 33 33 H 1.07997 * 120.02361 * 180.02562 * 7 6 4 34 34 H 0.97002 * 120.00116 * 184.99621 * 13 12 10 35 35 H 1.09000 * 109.47231 * 54.93772 * 20 18 9 36 36 H 1.09002 * 109.46871 * 294.93557 * 20 18 9 37 37 H 1.08998 * 111.06400 * 34.30543 * 24 22 21 38 38 H 1.09008 * 111.18461 * 270.19293 * 24 22 21 39 39 H 1.08999 * 110.30809 * 204.69015 * 25 24 22 40 40 H 1.08997 * 110.30979 * 82.51765 * 25 24 22 41 41 H 1.08993 * 109.83345 * 117.79592 * 27 26 25 42 42 H 1.08994 * 109.83076 * 238.68421 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1980 1.1956 0.0000 4 6 3.5829 1.1961 -0.0053 5 9 4.2569 2.3671 -0.0101 6 6 4.2784 -0.0021 -0.0052 7 6 3.5920 -1.1998 0.0008 8 6 2.2023 -1.2029 0.0059 9 7 1.5047 -2.4149 0.0112 10 6 1.1582 -3.0118 -1.1736 11 1 0.5423 -3.8990 -1.1715 12 6 1.5992 -2.4755 -2.3764 13 7 2.2484 -1.3328 -2.3876 14 14 1.2695 -3.3781 -3.9783 15 1 0.5256 -4.6320 -3.6958 16 1 0.4605 -2.5146 -4.8756 17 1 2.5597 -3.7051 -4.6368 18 6 1.1730 -2.9963 1.1811 19 8 1.3920 -2.4226 2.2269 20 6 0.5299 -4.3592 1.1894 21 8 0.3832 -4.8084 2.5381 22 6 -0.2204 -6.0980 2.6587 23 1 0.0391 -6.7300 1.8095 24 6 0.1839 -6.7771 3.9973 25 6 -1.0434 -7.6890 4.2484 26 8 -2.1733 -6.9335 3.7836 27 6 -1.7525 -5.9760 2.8050 28 1 -0.3633 0.0050 1.0276 29 1 -0.3633 0.8875 -0.5182 30 1 -0.3634 -0.8925 -0.5095 31 1 1.6580 2.1309 -0.0004 32 1 5.3584 0.0008 -0.0090 33 1 4.1345 -2.1336 0.0013 34 1 2.4928 -0.9220 -3.2317 35 1 1.1573 -5.0604 0.6391 36 1 -0.4508 -4.3011 0.7172 37 1 0.2950 -6.0401 4.7926 38 1 1.0937 -7.3661 3.8811 39 1 -1.1438 -7.9038 5.3123 40 1 -0.9487 -8.6154 3.6818 41 1 -2.2330 -6.1877 1.8499 42 1 -2.0135 -4.9706 3.1353 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001331655980.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:19:49 Heat of formation + Delta-G solvation = -126.615292 kcal Electronic energy + Delta-G solvation = -27871.841220 eV Core-core repulsion = 23732.370119 eV Total energy + Delta-G solvation = -4139.471101 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 323.137 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -48.06646 -39.82573 -39.42803 -37.62190 -36.42811 -34.77894 -31.89242 -31.67006 -31.45093 -29.39791 -28.75375 -27.02108 -26.06092 -24.87332 -22.60097 -21.87430 -21.46278 -20.83906 -19.45460 -18.08554 -17.17208 -16.87604 -16.32348 -15.94117 -15.82762 -15.32477 -15.04848 -14.96818 -14.75655 -14.71203 -14.39588 -13.59634 -13.37236 -13.27691 -13.14439 -12.62150 -12.58342 -12.47450 -12.29489 -12.19127 -11.94182 -11.60860 -11.49911 -11.43931 -11.31598 -11.12465 -10.81106 -10.73959 -10.57816 -10.48552 -10.31116 -9.63803 -9.58390 -9.39046 -8.69873 -8.23765 -7.87795 -7.65490 -6.22151 -4.18884 2.23374 2.29120 2.96813 3.06854 3.11052 3.37553 3.56810 3.83527 3.97284 4.39100 4.61827 4.63439 4.80995 4.90401 4.92011 5.06359 5.16240 5.28670 5.49139 5.56212 5.62478 5.65198 5.67616 5.71264 5.79962 5.86429 5.89748 5.96733 6.00781 6.24645 6.40108 6.42071 6.60260 6.73979 6.84945 6.99838 7.07005 7.08597 7.22628 7.35015 7.42172 7.62286 7.82882 8.26758 8.83115 9.17070 9.59899 10.46243 Molecular weight = 323.14amu Principal moments of inertia in cm(-1) A = 0.013371 B = 0.003959 C = 0.003349 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2093.531438 B = 7071.066469 C = 8358.218112 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.103 4.103 2 C -0.042 4.042 3 C -0.149 4.149 4 C 0.065 3.935 5 F -0.159 7.159 6 C -0.151 4.151 7 C -0.067 4.067 8 C 0.255 3.745 9 N -0.416 5.416 10 C -0.350 4.350 11 H 0.105 0.895 12 C 0.041 3.959 13 N -0.849 5.849 14 Si 0.925 3.075 15 H -0.269 1.269 16 H -0.279 1.279 17 H -0.279 1.279 18 C 0.468 3.532 19 O -0.572 6.572 20 C 0.061 3.939 21 O -0.347 6.347 22 C 0.055 3.945 23 H 0.078 0.922 24 C -0.152 4.152 25 C 0.052 3.948 26 O -0.382 6.382 27 C 0.026 3.974 28 H 0.057 0.943 29 H 0.052 0.948 30 H 0.077 0.923 31 H 0.117 0.883 32 H 0.117 0.883 33 H 0.113 0.887 34 H 0.274 0.726 35 H 0.075 0.925 36 H 0.071 0.929 37 H 0.091 0.909 38 H 0.088 0.912 39 H 0.088 0.912 40 H 0.061 0.939 41 H 0.071 0.929 42 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.883 -6.950 3.424 8.267 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C -0.044 4.044 3 C -0.169 4.169 4 C 0.046 3.954 5 F -0.138 7.138 6 C -0.171 4.171 7 C -0.087 4.087 8 C 0.164 3.836 9 N -0.135 5.135 10 C -0.476 4.476 11 H 0.123 0.877 12 C -0.165 4.165 13 N -0.486 5.486 14 Si 0.752 3.248 15 H -0.194 1.194 16 H -0.205 1.205 17 H -0.205 1.205 18 C 0.257 3.743 19 O -0.454 6.454 20 C -0.018 4.018 21 O -0.265 6.265 22 C -0.005 4.005 23 H 0.096 0.904 24 C -0.190 4.190 25 C -0.024 4.024 26 O -0.302 6.302 27 C -0.051 4.051 28 H 0.076 0.924 29 H 0.071 0.929 30 H 0.096 0.904 31 H 0.135 0.865 32 H 0.135 0.865 33 H 0.131 0.869 34 H 0.086 0.914 35 H 0.093 0.907 36 H 0.089 0.911 37 H 0.110 0.890 38 H 0.107 0.893 39 H 0.106 0.894 40 H 0.079 0.921 41 H 0.089 0.911 42 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges -2.765 -6.448 3.995 8.074 hybrid contribution 0.197 -0.290 -1.685 1.721 sum -2.568 -6.739 2.310 7.573 Atomic orbital electron populations 1.20605 0.91765 1.02625 1.00942 1.19469 0.95600 0.91479 0.97856 1.20487 0.91916 0.97994 1.06500 1.17413 0.90021 0.80492 1.07452 1.91379 1.80762 1.46937 1.94754 1.20548 0.99095 0.91217 1.06244 1.20636 0.93403 0.96506 0.98139 1.16737 0.89659 0.84617 0.92584 1.41235 1.49260 1.17674 1.05315 1.19738 1.33327 1.12384 0.82153 0.87697 1.25268 0.95456 0.96152 0.99673 1.69867 1.36164 1.15278 1.27242 0.85878 0.78289 0.79305 0.81352 1.19360 1.20513 1.20457 1.19583 0.83836 0.87438 0.83446 1.90624 1.58149 1.65259 1.31394 1.22177 1.00657 0.95682 0.83283 1.88056 1.80710 1.31861 1.25883 1.23658 0.92041 0.86240 0.98515 0.90385 1.23322 0.98857 0.99174 0.97644 1.23330 0.84713 0.94235 1.00156 1.88404 1.31723 1.51332 1.58715 1.23716 0.94932 0.94013 0.92414 0.92404 0.92855 0.90420 0.86500 0.86520 0.86937 0.91358 0.90667 0.91056 0.89011 0.89331 0.89426 0.92063 0.91109 0.89910 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -2.07 9.77 36.01 0.35 -1.72 16 2 C -0.04 -0.94 5.18 -104.42 -0.54 -1.49 16 3 C -0.15 -3.13 9.67 -39.54 -0.38 -3.51 16 4 C 0.07 1.37 7.30 -39.37 -0.29 1.08 16 5 F -0.16 -3.16 17.27 2.25 0.04 -3.12 16 6 C -0.15 -3.15 10.02 -39.54 -0.40 -3.55 16 7 C -0.07 -1.52 8.88 -39.38 -0.35 -1.87 16 8 C 0.26 6.00 2.22 -83.67 -0.19 5.82 16 9 N -0.42 -9.60 1.79 -58.97 -0.11 -9.71 16 10 C -0.35 -7.84 8.67 -14.95 -0.13 -7.97 16 11 H 0.11 2.14 6.38 -52.49 -0.34 1.81 16 12 C 0.04 0.94 5.44 -17.48 -0.10 0.84 16 13 N -0.85 -20.27 9.35 55.49 0.52 -19.75 16 14 Si 0.93 17.87 29.56 -169.99 -5.02 12.85 16 15 H -0.27 -5.00 7.11 56.52 0.40 -4.60 16 16 H -0.28 -5.51 7.11 56.52 0.40 -5.11 16 17 H -0.28 -5.53 7.11 56.52 0.40 -5.13 16 18 C 0.47 10.64 7.66 -10.98 -0.08 10.55 16 19 O -0.57 -14.85 16.49 -14.30 -0.24 -15.08 16 20 C 0.06 1.11 4.69 36.01 0.17 1.28 16 21 O -0.35 -6.18 9.62 -55.09 -0.53 -6.71 16 22 C 0.05 0.73 3.45 -24.70 -0.09 0.64 16 23 H 0.08 0.90 7.90 -51.93 -0.41 0.49 16 24 C -0.15 -1.72 6.89 -24.40 -0.17 -1.88 16 25 C 0.05 0.53 7.78 38.19 0.30 0.83 16 26 O -0.38 -5.10 11.36 -35.23 -0.40 -5.50 16 27 C 0.03 0.34 7.57 37.89 0.29 0.63 16 28 H 0.06 1.13 8.14 -51.93 -0.42 0.71 16 29 H 0.05 0.95 8.09 -51.93 -0.42 0.53 16 30 H 0.08 1.66 6.91 -51.93 -0.36 1.30 16 31 H 0.12 2.15 8.06 -52.49 -0.42 1.73 16 32 H 0.12 2.11 8.06 -52.49 -0.42 1.69 16 33 H 0.11 2.47 8.06 -52.49 -0.42 2.05 16 34 H 0.27 6.40 8.32 -40.82 -0.34 6.07 16 35 H 0.08 1.24 7.92 -51.93 -0.41 0.83 16 36 H 0.07 1.17 7.87 -51.93 -0.41 0.76 16 37 H 0.09 1.13 8.14 -51.93 -0.42 0.71 16 38 H 0.09 0.84 8.14 -51.92 -0.42 0.42 16 39 H 0.09 0.74 8.14 -51.93 -0.42 0.32 16 40 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 41 H 0.07 0.82 8.14 -51.93 -0.42 0.40 16 42 H 0.08 1.18 8.05 -51.93 -0.42 0.76 16 LS Contribution 356.41 15.07 5.37 5.37 Total: -1.00 -28.47 356.41 -7.67 -36.14 By element: Atomic # 1 Polarization: 11.54 SS G_CDS: -5.70 Total: 5.84 kcal Atomic # 6 Polarization: 1.28 SS G_CDS: -1.60 Total: -0.32 kcal Atomic # 7 Polarization: -29.87 SS G_CDS: 0.41 Total: -29.46 kcal Atomic # 8 Polarization: -26.13 SS G_CDS: -1.17 Total: -27.29 kcal Atomic # 9 Polarization: -3.16 SS G_CDS: 0.04 Total: -3.12 kcal Atomic # 14 Polarization: 17.87 SS G_CDS: -5.02 Total: 12.85 kcal Total LS contribution 5.37 Total: 5.37 kcal Total: -28.47 -7.67 -36.14 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001331655980.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -90.476 kcal (2) G-P(sol) polarization free energy of solvation -28.470 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -118.946 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.669 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.139 kcal (6) G-S(sol) free energy of system = (1) + (5) -126.615 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds