Wall clock time and date at job start Tue Mar 31 2020 14:19:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.38088 * 120.02671 * 2 1 4 4 C 1.38495 * 120.04930 * 180.25569 * 3 2 1 5 5 F 1.35108 * 119.94715 * 179.76511 * 4 3 2 6 6 C 1.38546 * 120.10820 * 359.73715 * 4 3 2 7 7 C 1.38043 * 120.04895 * 359.97438 * 6 4 3 8 8 C 1.38943 * 120.02830 * 179.72033 * 2 1 3 9 9 N 1.39839 * 120.04605 * 0.02562 * 8 2 1 10 10 C 1.37122 * 120.00266 * 89.72745 * 9 8 2 11 11 H 1.08001 * 120.00366 * 185.59223 * 10 9 8 12 12 C 1.38885 * 119.99823 * 5.58855 * 10 9 8 13 13 N 1.31428 * 119.99884 * 354.02287 * 12 10 9 14 14 Si 1.86802 * 120.00109 * 174.02697 * 12 10 9 15 15 H 1.48504 * 109.47006 * 0.02562 * 14 12 10 16 16 H 1.48505 * 109.46870 * 119.99908 * 14 12 10 17 17 H 1.48493 * 109.47200 * 240.00229 * 14 12 10 18 18 C 1.34778 * 119.99893 * 269.72184 * 9 8 2 19 19 O 1.21279 * 120.00030 * 5.39114 * 18 9 8 20 20 C 1.50703 * 119.99840 * 185.39139 * 18 9 8 21 21 O 1.42904 * 109.47151 * 174.94178 * 20 18 9 22 22 C 1.42894 * 113.99853 * 179.97438 * 21 20 18 23 23 H 1.08996 * 110.91492 * 32.12949 * 22 21 20 24 24 C 1.55451 * 110.92084 * 155.75368 * 22 21 20 25 25 C 1.54953 * 100.99034 * 152.22692 * 24 22 21 26 26 O 1.43647 * 105.13221 * 323.60166 * 25 24 22 27 27 C 1.43236 * 109.97410 * 24.43017 * 26 25 24 28 28 H 1.08999 * 109.47204 * 270.27911 * 1 2 3 29 29 H 1.09001 * 109.47039 * 30.28132 * 1 2 3 30 30 H 1.09003 * 109.47241 * 150.27760 * 1 2 3 31 31 H 1.07998 * 119.97499 * 359.97438 * 3 2 1 32 32 H 1.08000 * 119.97476 * 180.02562 * 6 4 3 33 33 H 1.07997 * 120.02361 * 180.02562 * 7 6 4 34 34 H 0.97002 * 120.00116 * 184.99621 * 13 12 10 35 35 H 1.09000 * 109.47231 * 54.93772 * 20 18 9 36 36 H 1.09002 * 109.46871 * 294.93557 * 20 18 9 37 37 H 1.08998 * 111.06400 * 34.30543 * 24 22 21 38 38 H 1.09008 * 111.18461 * 270.19293 * 24 22 21 39 39 H 1.08999 * 110.30809 * 204.69015 * 25 24 22 40 40 H 1.08997 * 110.30979 * 82.51765 * 25 24 22 41 41 H 1.08993 * 109.83345 * 117.79592 * 27 26 25 42 42 H 1.08994 * 109.83076 * 238.68421 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1980 1.1956 0.0000 4 6 3.5829 1.1961 -0.0053 5 9 4.2569 2.3671 -0.0101 6 6 4.2784 -0.0021 -0.0052 7 6 3.5920 -1.1998 0.0008 8 6 2.2023 -1.2029 0.0059 9 7 1.5047 -2.4149 0.0112 10 6 1.1582 -3.0118 -1.1736 11 1 0.5423 -3.8990 -1.1715 12 6 1.5992 -2.4755 -2.3764 13 7 2.2484 -1.3328 -2.3876 14 14 1.2695 -3.3781 -3.9783 15 1 0.5256 -4.6320 -3.6958 16 1 0.4605 -2.5146 -4.8756 17 1 2.5597 -3.7051 -4.6368 18 6 1.1730 -2.9963 1.1811 19 8 1.3920 -2.4226 2.2269 20 6 0.5299 -4.3592 1.1894 21 8 0.3832 -4.8084 2.5381 22 6 -0.2204 -6.0980 2.6587 23 1 0.0391 -6.7300 1.8095 24 6 0.1839 -6.7771 3.9973 25 6 -1.0434 -7.6890 4.2484 26 8 -2.1733 -6.9335 3.7836 27 6 -1.7525 -5.9760 2.8050 28 1 -0.3633 0.0050 1.0276 29 1 -0.3633 0.8875 -0.5182 30 1 -0.3634 -0.8925 -0.5095 31 1 1.6580 2.1309 -0.0004 32 1 5.3584 0.0008 -0.0090 33 1 4.1345 -2.1336 0.0013 34 1 2.4928 -0.9220 -3.2317 35 1 1.1573 -5.0604 0.6391 36 1 -0.4508 -4.3011 0.7172 37 1 0.2950 -6.0401 4.7926 38 1 1.0937 -7.3661 3.8811 39 1 -1.1438 -7.9038 5.3123 40 1 -0.9487 -8.6154 3.6818 41 1 -2.2330 -6.1877 1.8499 42 1 -2.0135 -4.9706 3.1353 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001331655980.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:19:48 Heat of formation + Delta-G solvation = -140.926343 kcal Electronic energy + Delta-G solvation = -27872.461794 eV Core-core repulsion = 23732.370119 eV Total energy + Delta-G solvation = -4140.091675 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 323.137 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -49.68595 -41.40693 -40.56147 -39.16542 -37.79913 -36.52896 -33.60122 -33.35780 -32.47199 -30.91797 -29.83636 -28.51771 -27.69011 -26.57626 -23.72083 -23.30812 -22.53435 -22.44383 -21.16258 -19.69593 -18.44755 -18.07726 -17.94013 -17.48257 -17.23665 -16.74675 -16.50984 -16.37640 -16.28750 -16.06754 -15.71857 -15.10860 -14.85500 -14.78148 -14.26387 -14.24240 -14.16163 -14.04669 -13.72461 -13.52112 -13.22863 -13.16648 -12.95402 -12.76933 -12.58602 -12.47173 -12.40908 -12.24555 -12.02589 -11.97856 -11.68526 -11.28300 -10.66452 -10.51978 -10.45159 -9.99729 -9.56392 -9.33664 -7.93494 -5.94891 0.55092 0.60384 1.41852 1.51571 1.61793 1.86514 2.05425 2.38012 2.89878 2.93407 3.19605 3.23010 3.45940 3.50300 3.88680 3.97204 3.99003 4.07516 4.11898 4.21425 4.32858 4.35832 4.38897 4.42765 4.64593 4.67649 4.74037 4.76261 4.80978 4.82166 4.93682 4.94546 5.05616 5.07149 5.32955 5.38964 5.41624 5.53598 5.71628 5.92416 5.94416 6.10479 6.17475 6.55241 7.09411 7.45590 7.87490 8.73989 Molecular weight = 323.14amu Principal moments of inertia in cm(-1) A = 0.013371 B = 0.003959 C = 0.003349 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2093.531438 B = 7071.066469 C = 8358.218112 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.094 4.094 2 C -0.064 4.064 3 C -0.151 4.151 4 C 0.059 3.941 5 F -0.152 7.152 6 C -0.150 4.150 7 C -0.087 4.087 8 C 0.234 3.766 9 N -0.419 5.419 10 C -0.360 4.360 11 H 0.125 0.875 12 C 0.003 3.997 13 N -0.871 5.871 14 Si 0.988 3.012 15 H -0.251 1.251 16 H -0.286 1.286 17 H -0.287 1.287 18 C 0.453 3.547 19 O -0.616 6.616 20 C 0.072 3.928 21 O -0.375 6.375 22 C 0.046 3.954 23 H 0.102 0.898 24 C -0.151 4.151 25 C 0.052 3.948 26 O -0.402 6.402 27 C 0.028 3.972 28 H 0.058 0.942 29 H 0.075 0.925 30 H 0.061 0.939 31 H 0.141 0.859 32 H 0.141 0.859 33 H 0.108 0.892 34 H 0.269 0.731 35 H 0.093 0.907 36 H 0.089 0.911 37 H 0.073 0.927 38 H 0.109 0.891 39 H 0.103 0.897 40 H 0.085 0.915 41 H 0.087 0.913 42 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.379 -8.373 2.647 9.410 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.065 4.065 3 C -0.170 4.170 4 C 0.040 3.960 5 F -0.131 7.131 6 C -0.169 4.169 7 C -0.107 4.107 8 C 0.143 3.857 9 N -0.136 5.136 10 C -0.485 4.485 11 H 0.142 0.858 12 C -0.201 4.201 13 N -0.508 5.508 14 Si 0.812 3.188 15 H -0.175 1.175 16 H -0.212 1.212 17 H -0.214 1.214 18 C 0.244 3.756 19 O -0.502 6.502 20 C -0.006 4.006 21 O -0.294 6.294 22 C -0.012 4.012 23 H 0.120 0.880 24 C -0.188 4.188 25 C -0.024 4.024 26 O -0.322 6.322 27 C -0.049 4.049 28 H 0.076 0.924 29 H 0.094 0.906 30 H 0.080 0.920 31 H 0.159 0.841 32 H 0.159 0.841 33 H 0.126 0.874 34 H 0.080 0.920 35 H 0.111 0.889 36 H 0.107 0.893 37 H 0.092 0.908 38 H 0.127 0.873 39 H 0.121 0.879 40 H 0.103 0.897 41 H 0.105 0.895 42 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -3.270 -7.893 3.219 9.130 hybrid contribution 0.382 0.175 -1.395 1.457 sum -2.888 -7.718 1.824 8.440 Atomic orbital electron populations 1.20534 0.90679 1.02855 1.01009 1.19763 0.96681 0.91688 0.98392 1.20771 0.92203 0.98599 1.05474 1.17494 0.90250 0.80790 1.07471 1.91394 1.80595 1.46416 1.94701 1.20789 1.00391 0.90672 1.05096 1.20732 0.93499 0.97048 0.99414 1.17078 0.90251 0.85395 0.92998 1.41459 1.48738 1.17640 1.05801 1.20185 1.33426 1.12885 0.81977 0.85799 1.26005 0.95222 0.96611 1.02234 1.70020 1.36988 1.16446 1.27339 0.84921 0.77573 0.78752 0.77511 1.17482 1.21194 1.21371 1.20423 0.83578 0.88922 0.82678 1.90578 1.60099 1.66762 1.32755 1.22050 1.01285 0.93237 0.84071 1.88027 1.81411 1.34291 1.25651 1.23971 0.92005 0.84777 1.00463 0.87982 1.23363 1.00430 0.99059 0.95993 1.23548 0.83002 0.94281 1.01573 1.88379 1.33234 1.51629 1.58916 1.23658 0.94979 0.93203 0.93033 0.92367 0.90635 0.92041 0.84128 0.84113 0.87401 0.91971 0.88886 0.89304 0.90827 0.87291 0.87851 0.89708 0.89499 0.91981 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -3.78 9.77 71.24 0.70 -3.09 16 2 C -0.06 -2.84 5.18 -19.73 -0.10 -2.95 16 3 C -0.15 -6.24 9.67 22.30 0.22 -6.02 16 4 C 0.06 2.44 7.30 22.40 0.16 2.60 16 5 F -0.15 -5.83 17.27 44.97 0.78 -5.06 16 6 C -0.15 -6.21 10.02 22.30 0.22 -5.99 16 7 C -0.09 -4.00 8.88 22.40 0.20 -3.80 16 8 C 0.23 11.13 2.22 38.21 0.08 11.21 16 9 N -0.42 -19.42 1.79 -458.87 -0.82 -20.24 16 10 C -0.36 -15.80 8.67 84.02 0.73 -15.07 16 11 H 0.12 4.81 6.38 -2.91 -0.02 4.80 16 12 C 0.00 0.15 5.44 84.91 0.46 0.62 16 13 N -0.87 -41.52 9.35 21.65 0.20 -41.32 16 14 Si 0.99 35.69 29.56 68.60 2.03 37.72 16 15 H -0.25 -8.29 7.11 99.48 0.71 -7.59 16 16 H -0.29 -10.57 7.11 99.48 0.71 -9.86 16 17 H -0.29 -10.73 7.11 99.48 0.71 -10.02 16 18 C 0.45 20.81 7.66 87.66 0.67 21.49 16 19 O -0.62 -32.93 16.49 15.96 0.26 -32.66 16 20 C 0.07 2.56 4.69 71.24 0.33 2.89 16 21 O -0.38 -13.20 9.62 -129.99 -1.25 -14.45 16 22 C 0.05 1.15 3.45 31.91 0.11 1.26 16 23 H 0.10 2.05 7.90 -2.39 -0.02 2.03 16 24 C -0.15 -3.16 6.89 32.11 0.22 -2.94 16 25 C 0.05 0.92 7.78 72.65 0.57 1.49 16 26 O -0.40 -10.09 11.36 -148.98 -1.69 -11.78 16 27 C 0.03 0.71 7.57 72.45 0.55 1.26 16 28 H 0.06 2.29 8.14 -2.39 -0.02 2.27 16 29 H 0.07 2.62 8.09 -2.39 -0.02 2.60 16 30 H 0.06 2.64 6.91 -2.39 -0.02 2.62 16 31 H 0.14 4.97 8.06 -2.91 -0.02 4.95 16 32 H 0.14 4.97 8.06 -2.91 -0.02 4.94 16 33 H 0.11 4.88 8.06 -2.91 -0.02 4.86 16 34 H 0.27 12.58 8.32 -92.71 -0.77 11.81 16 35 H 0.09 2.90 7.92 -2.39 -0.02 2.89 16 36 H 0.09 2.77 7.87 -2.39 -0.02 2.76 16 37 H 0.07 1.80 8.14 -2.39 -0.02 1.78 16 38 H 0.11 1.80 8.14 -2.38 -0.02 1.78 16 39 H 0.10 1.51 8.14 -2.39 -0.02 1.49 16 40 H 0.08 1.15 8.14 -2.39 -0.02 1.13 16 41 H 0.09 1.85 8.14 -2.39 -0.02 1.83 16 42 H 0.06 1.78 8.05 -2.39 -0.02 1.76 16 Total: -1.00 -61.65 356.41 5.66 -55.98 By element: Atomic # 1 Polarization: 27.80 SS G_CDS: 1.03 Total: 28.83 kcal Atomic # 6 Polarization: -2.15 SS G_CDS: 5.12 Total: 2.97 kcal Atomic # 7 Polarization: -60.94 SS G_CDS: -0.62 Total: -61.56 kcal Atomic # 8 Polarization: -56.21 SS G_CDS: -2.68 Total: -58.89 kcal Atomic # 9 Polarization: -5.83 SS G_CDS: 0.78 Total: -5.06 kcal Atomic # 14 Polarization: 35.69 SS G_CDS: 2.03 Total: 37.72 kcal Total: -61.65 5.66 -55.98 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001331655980.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -84.942 kcal (2) G-P(sol) polarization free energy of solvation -61.645 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -146.587 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.661 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.984 kcal (6) G-S(sol) free energy of system = (1) + (5) -140.926 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds