Wall clock time and date at job start Tue Mar 31 2020 14:08:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50688 * 1 3 3 O 1.21230 * 120.00259 * 2 1 4 4 C 1.47368 * 120.00310 * 180.02562 * 2 1 3 5 5 C 1.39844 * 120.02358 * 353.65455 * 4 2 1 6 6 C 1.37731 * 119.97720 * 180.02562 * 5 4 2 7 7 C 1.39635 * 120.02316 * 0.02562 * 6 5 4 8 8 C 1.47993 * 119.97442 * 180.02562 * 7 6 5 9 9 O 1.21536 * 120.00063 * 180.02562 * 8 7 6 10 10 N 1.34774 * 120.00103 * 359.97438 * 8 7 6 11 11 C 1.39089 * 120.00317 * 174.00385 * 10 8 7 12 12 C 1.39517 * 119.83623 * 325.67718 * 11 10 8 13 13 C 1.36349 * 120.16728 * 179.69855 * 12 11 10 14 14 C 1.40891 * 119.83161 * 0.28180 * 13 12 11 15 15 C 1.41122 * 120.16113 * 180.02562 * 14 13 12 16 16 H 1.08003 * 120.00099 * 28.10488 * 15 14 13 17 17 C 1.39930 * 119.99837 * 208.10768 * 15 14 13 18 18 N 1.30862 * 119.99597 * 13.67886 * 17 15 14 19 19 Si 1.86798 * 120.00186 * 193.67671 * 17 15 14 20 20 H 1.48507 * 109.46912 * 0.02562 * 19 17 15 21 21 H 1.48495 * 109.46998 * 120.00115 * 19 17 15 22 22 H 1.48495 * 109.47087 * 240.00143 * 19 17 15 23 23 C 1.40891 * 119.67474 * 359.97438 * 14 13 12 24 24 C 1.36348 * 119.83432 * 0.02562 * 23 14 13 25 25 C 1.39589 * 120.05039 * 0.27303 * 7 6 5 26 26 C 1.37772 * 120.02859 * 359.44729 * 25 7 6 27 27 C 1.50697 * 120.01882 * 180.27488 * 26 25 7 28 28 H 1.08999 * 109.47387 * 183.43390 * 1 2 3 29 29 H 1.08998 * 109.47344 * 303.43003 * 1 2 3 30 30 H 1.09005 * 109.47550 * 63.43302 * 1 2 3 31 31 H 1.08000 * 120.01576 * 0.02562 * 5 4 2 32 32 H 1.07993 * 119.99071 * 179.97438 * 6 5 4 33 33 H 0.97003 * 120.00157 * 354.00612 * 10 8 7 34 34 H 1.08001 * 119.91638 * 359.97438 * 12 11 10 35 35 H 1.08006 * 120.08672 * 180.29529 * 13 12 11 36 36 H 0.97005 * 119.99721 * 179.97438 * 18 17 15 37 37 H 1.08009 * 120.07980 * 180.02562 * 23 14 13 38 38 H 1.07998 * 119.91649 * 180.02562 * 24 23 14 39 39 H 1.08001 * 119.98458 * 179.70510 * 25 7 6 40 40 H 1.08996 * 109.46745 * 263.82840 * 27 26 25 41 41 H 1.09004 * 109.46984 * 23.82244 * 27 26 25 42 42 H 1.08995 * 109.47270 * 143.82696 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 8 2.1131 1.0499 0.0000 4 6 2.2438 -1.2762 -0.0006 5 6 1.5516 -2.4840 0.1327 6 6 2.2413 -3.6761 0.1326 7 6 3.6313 -3.6791 0.0000 8 6 4.3713 -4.9607 -0.0006 9 8 5.5812 -4.9638 -0.1155 10 7 3.7036 -6.1244 0.1274 11 6 4.3814 -7.3326 0.0021 12 6 5.4463 -7.4415 -0.8925 13 6 6.1194 -8.6209 -1.0162 14 6 5.7331 -9.7328 -0.2421 15 6 6.4251 -10.9566 -0.3642 16 1 7.4643 -10.9624 -0.6582 17 6 5.7649 -12.1627 -0.1042 18 7 4.4598 -12.1874 -0.0120 19 14 6.7465 -13.7373 0.1111 20 1 8.1943 -13.4424 -0.0384 21 1 6.4929 -14.2977 1.4627 22 1 6.3327 -14.7233 -0.9192 23 6 4.6532 -9.6167 0.6553 24 6 3.9896 -8.4309 0.7683 25 6 4.3240 -2.4738 -0.1269 26 6 3.6356 -1.2804 -0.1328 27 6 4.3831 0.0203 -0.2760 28 1 -0.3634 -1.0258 0.0616 29 1 -0.3634 0.5661 0.8576 30 1 -0.3634 0.4596 -0.9192 31 1 0.4765 -2.4820 0.2357 32 1 1.7070 -4.6089 0.2359 33 1 2.7503 -6.1195 0.3068 34 1 5.7413 -6.5883 -1.4854 35 1 6.9467 -8.7024 -1.7058 36 1 4.0020 -13.0235 0.1678 37 1 4.3517 -10.4648 1.2523 38 1 3.1619 -8.3403 1.4560 39 1 5.3995 -2.4771 -0.2246 40 1 4.5605 0.4478 0.7108 41 1 5.3375 -0.1616 -0.7701 42 1 3.7919 0.7154 -0.8721 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001351279303.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:08:28 Heat of formation + Delta-G solvation = -24.189502 kcal Electronic energy + Delta-G solvation = -25166.584867 eV Core-core repulsion = 21462.324506 eV Total energy + Delta-G solvation = -3704.260361 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 323.131 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -40.73154 -39.74327 -38.20475 -37.13067 -34.62060 -33.40929 -32.87127 -32.27673 -29.80885 -29.64070 -28.93742 -27.15541 -25.68467 -24.12991 -22.17817 -21.70894 -20.96011 -20.41209 -19.42007 -17.79726 -17.36474 -16.84035 -16.59979 -15.75753 -15.50535 -15.21902 -15.10049 -14.72269 -14.39326 -14.21463 -13.98796 -13.65891 -13.47721 -13.08388 -12.87258 -12.65505 -12.56315 -12.50499 -12.21568 -12.17771 -12.12547 -11.81067 -11.53675 -11.32514 -11.18616 -10.95633 -10.59833 -10.16315 -9.86629 -9.78124 -9.51603 -9.31308 -9.21710 -9.03807 -8.81370 -7.61350 -7.02162 -6.79534 -4.35487 0.12084 1.06703 1.87218 2.56809 2.96878 3.03610 3.05893 3.11188 3.22265 3.52787 3.69099 3.79074 3.90501 4.37130 4.48264 4.57332 4.60423 4.82355 4.96472 5.00587 5.02418 5.12309 5.31811 5.40402 5.55177 5.56672 5.63765 5.69086 5.89428 5.94784 6.07727 6.13821 6.25040 6.34642 6.52432 6.68516 6.86032 6.99001 7.12347 7.18482 7.21553 7.53923 7.64069 7.80139 7.98383 8.18355 8.21928 8.52895 8.63980 8.83418 8.92795 10.14881 Molecular weight = 323.13amu Principal moments of inertia in cm(-1) A = 0.038334 B = 0.002138 C = 0.002045 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 730.244267 B =13091.449508 C =13688.272469 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C 0.393 3.607 3 O -0.453 6.453 4 C -0.164 4.164 5 C -0.077 4.077 6 C -0.112 4.112 7 C -0.082 4.082 8 C 0.534 3.466 9 O -0.523 6.523 10 N -0.639 5.639 11 C -0.009 4.009 12 C -0.075 4.075 13 C -0.213 4.213 14 C 0.107 3.893 15 C -0.456 4.456 16 H 0.079 0.921 17 C 0.073 3.927 18 N -0.797 5.797 19 Si 0.910 3.090 20 H -0.260 1.260 21 H -0.272 1.272 22 H -0.274 1.274 23 C -0.149 4.149 24 C -0.111 4.111 25 C -0.080 4.080 26 C -0.031 4.031 27 C -0.122 4.122 28 H 0.084 0.916 29 H 0.093 0.907 30 H 0.095 0.905 31 H 0.139 0.861 32 H 0.134 0.866 33 H 0.395 0.605 34 H 0.101 0.899 35 H 0.096 0.904 36 H 0.280 0.720 37 H 0.122 0.878 38 H 0.091 0.909 39 H 0.143 0.857 40 H 0.077 0.923 41 H 0.064 0.936 42 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.297 17.050 0.982 19.942 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.259 4.259 2 C 0.273 3.727 3 O -0.329 6.329 4 C -0.165 4.165 5 C -0.095 4.095 6 C -0.131 4.131 7 C -0.086 4.086 8 C 0.321 3.679 9 O -0.401 6.401 10 N -0.282 5.282 11 C -0.101 4.101 12 C -0.094 4.094 13 C -0.233 4.233 14 C 0.105 3.895 15 C -0.486 4.486 16 H 0.097 0.903 17 C -0.144 4.144 18 N -0.423 5.423 19 Si 0.735 3.265 20 H -0.184 1.184 21 H -0.197 1.197 22 H -0.200 1.200 23 C -0.169 4.169 24 C -0.132 4.132 25 C -0.099 4.099 26 C -0.031 4.031 27 C -0.178 4.178 28 H 0.103 0.897 29 H 0.112 0.888 30 H 0.114 0.886 31 H 0.157 0.843 32 H 0.152 0.848 33 H 0.229 0.771 34 H 0.119 0.881 35 H 0.115 0.885 36 H 0.091 0.909 37 H 0.139 0.861 38 H 0.109 0.891 39 H 0.161 0.839 40 H 0.095 0.905 41 H 0.083 0.917 42 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges -9.317 17.423 0.912 19.779 hybrid contribution -0.327 -1.049 0.198 1.116 sum -9.644 16.374 1.110 19.036 Atomic orbital electron populations 1.22247 0.93712 1.04952 1.04975 1.22519 0.91622 0.87550 0.71054 1.90496 1.71471 1.34594 1.36366 1.20480 0.94047 0.95022 1.06997 1.21384 1.00130 0.91047 0.96890 1.21308 0.93170 0.98668 0.99940 1.20390 0.93840 0.94238 1.00118 1.18251 0.87348 0.83453 0.78858 1.90777 1.13357 1.86931 1.49028 1.42885 1.11257 1.04660 1.69352 1.17124 1.02270 0.84722 1.05969 1.20236 0.95646 0.96960 0.96607 1.20698 1.04107 0.94315 1.04169 1.17697 0.91066 0.92167 0.88591 1.19605 0.98459 0.90245 1.40295 0.90268 1.25929 0.94870 1.01237 0.92370 1.69820 1.08447 1.28863 1.35157 0.86223 0.81038 0.80595 0.78657 1.18383 1.19727 1.19977 1.20904 0.99223 0.95897 1.00869 1.20229 1.00545 0.93552 0.98834 1.21223 1.01173 0.90020 0.97452 1.20190 0.92461 0.95946 0.94541 1.21103 0.99603 0.93801 1.03295 0.89688 0.88801 0.88644 0.84299 0.84838 0.77052 0.88111 0.88537 0.90917 0.86051 0.89073 0.83920 0.90452 0.91750 0.89110 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -1.02 10.19 36.00 0.37 -0.66 16 2 C 0.39 3.51 7.16 -30.60 -0.22 3.29 16 3 O -0.45 -5.23 14.07 5.60 0.08 -5.15 16 4 C -0.16 -1.62 5.87 -104.99 -0.62 -2.23 16 5 C -0.08 -0.64 9.42 -39.17 -0.37 -1.01 16 6 C -0.11 -1.13 9.52 -39.25 -0.37 -1.51 16 7 C -0.08 -1.11 5.88 -104.87 -0.62 -1.73 16 8 C 0.53 9.38 7.48 -12.26 -0.09 9.29 16 9 O -0.52 -11.23 14.08 5.33 0.08 -11.16 16 10 N -0.64 -11.08 5.24 -10.56 -0.06 -11.14 16 11 C -0.01 -0.19 6.27 -83.61 -0.52 -0.71 16 12 C -0.07 -1.77 8.57 -39.79 -0.34 -2.11 16 13 C -0.21 -5.34 9.74 -39.26 -0.38 -5.73 16 14 C 0.11 2.84 5.55 -106.80 -0.59 2.25 16 15 C -0.46 -11.96 9.04 -37.86 -0.34 -12.30 16 16 H 0.08 2.01 7.88 -52.48 -0.41 1.60 16 17 C 0.07 1.80 5.20 -17.33 -0.09 1.71 16 18 N -0.80 -20.04 10.95 55.55 0.61 -19.43 16 19 Si 0.91 18.38 29.58 -169.99 -5.03 13.35 16 20 H -0.26 -5.23 7.11 56.52 0.40 -4.83 16 21 H -0.27 -5.39 7.11 56.52 0.40 -4.99 16 22 H -0.27 -5.45 7.11 56.52 0.40 -5.05 16 23 C -0.15 -3.76 8.61 -39.26 -0.34 -4.10 16 24 C -0.11 -2.49 9.90 -39.78 -0.39 -2.88 16 25 C -0.08 -1.03 9.20 -39.25 -0.36 -1.39 16 26 C -0.03 -0.35 5.91 -104.21 -0.62 -0.97 16 27 C -0.12 -1.25 8.72 36.00 0.31 -0.93 16 28 H 0.08 0.28 5.62 -51.93 -0.29 -0.01 16 29 H 0.09 0.41 8.14 -51.93 -0.42 -0.02 16 30 H 0.10 0.41 8.14 -51.93 -0.42 -0.02 16 31 H 0.14 0.67 5.95 -52.49 -0.31 0.35 16 32 H 0.13 1.06 6.40 -52.49 -0.34 0.72 16 33 H 0.39 5.29 6.85 -40.82 -0.28 5.01 16 34 H 0.10 2.35 6.49 -52.49 -0.34 2.01 16 35 H 0.10 2.30 8.06 -52.48 -0.42 1.88 16 36 H 0.28 6.37 8.30 -40.82 -0.34 6.03 16 37 H 0.12 3.13 6.27 -52.48 -0.33 2.80 16 38 H 0.09 1.76 8.06 -52.49 -0.42 1.33 16 39 H 0.14 1.90 7.63 -52.49 -0.40 1.50 16 40 H 0.08 0.77 8.14 -51.93 -0.42 0.35 16 41 H 0.06 0.59 8.04 -51.93 -0.42 0.17 16 42 H 0.09 0.97 5.84 -51.93 -0.30 0.67 16 LS Contribution 353.28 15.07 5.32 5.32 Total: -1.00 -31.16 353.28 -9.26 -40.42 By element: Atomic # 1 Polarization: 14.19 SS G_CDS: -4.67 Total: 9.51 kcal Atomic # 6 Polarization: -16.14 SS G_CDS: -5.59 Total: -21.73 kcal Atomic # 7 Polarization: -31.12 SS G_CDS: 0.55 Total: -30.57 kcal Atomic # 8 Polarization: -16.46 SS G_CDS: 0.15 Total: -16.31 kcal Atomic # 14 Polarization: 18.38 SS G_CDS: -5.03 Total: 13.35 kcal Total LS contribution 5.32 Total: 5.32 kcal Total: -31.16 -9.26 -40.42 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001351279303.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.228 kcal (2) G-P(sol) polarization free energy of solvation -31.160 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.933 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.257 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.417 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.190 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds