Wall clock time and date at job start Tue Mar 31 2020 14:08:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50688 * 1 3 3 O 1.21230 * 120.00259 * 2 1 4 4 C 1.47368 * 120.00310 * 180.02562 * 2 1 3 5 5 C 1.39844 * 120.02358 * 353.65455 * 4 2 1 6 6 C 1.37731 * 119.97720 * 180.02562 * 5 4 2 7 7 C 1.39635 * 120.02316 * 0.02562 * 6 5 4 8 8 C 1.47993 * 119.97442 * 180.02562 * 7 6 5 9 9 O 1.21536 * 120.00063 * 180.02562 * 8 7 6 10 10 N 1.34774 * 120.00103 * 359.97438 * 8 7 6 11 11 C 1.39089 * 120.00317 * 174.00385 * 10 8 7 12 12 C 1.39517 * 119.83623 * 325.67718 * 11 10 8 13 13 C 1.36349 * 120.16728 * 179.69855 * 12 11 10 14 14 C 1.40891 * 119.83161 * 0.28180 * 13 12 11 15 15 C 1.41122 * 120.16113 * 180.02562 * 14 13 12 16 16 H 1.08003 * 120.00099 * 28.10488 * 15 14 13 17 17 C 1.39930 * 119.99837 * 208.10768 * 15 14 13 18 18 N 1.30862 * 119.99597 * 13.67886 * 17 15 14 19 19 Si 1.86798 * 120.00186 * 193.67671 * 17 15 14 20 20 H 1.48507 * 109.46912 * 0.02562 * 19 17 15 21 21 H 1.48495 * 109.46998 * 120.00115 * 19 17 15 22 22 H 1.48495 * 109.47087 * 240.00143 * 19 17 15 23 23 C 1.40891 * 119.67474 * 359.97438 * 14 13 12 24 24 C 1.36348 * 119.83432 * 0.02562 * 23 14 13 25 25 C 1.39589 * 120.05039 * 0.27303 * 7 6 5 26 26 C 1.37772 * 120.02859 * 359.44729 * 25 7 6 27 27 C 1.50697 * 120.01882 * 180.27488 * 26 25 7 28 28 H 1.08999 * 109.47387 * 183.43390 * 1 2 3 29 29 H 1.08998 * 109.47344 * 303.43003 * 1 2 3 30 30 H 1.09005 * 109.47550 * 63.43302 * 1 2 3 31 31 H 1.08000 * 120.01576 * 0.02562 * 5 4 2 32 32 H 1.07993 * 119.99071 * 179.97438 * 6 5 4 33 33 H 0.97003 * 120.00157 * 354.00612 * 10 8 7 34 34 H 1.08001 * 119.91638 * 359.97438 * 12 11 10 35 35 H 1.08006 * 120.08672 * 180.29529 * 13 12 11 36 36 H 0.97005 * 119.99721 * 179.97438 * 18 17 15 37 37 H 1.08009 * 120.07980 * 180.02562 * 23 14 13 38 38 H 1.07998 * 119.91649 * 180.02562 * 24 23 14 39 39 H 1.08001 * 119.98458 * 179.70510 * 25 7 6 40 40 H 1.08996 * 109.46745 * 263.82840 * 27 26 25 41 41 H 1.09004 * 109.46984 * 23.82244 * 27 26 25 42 42 H 1.08995 * 109.47270 * 143.82696 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 8 2.1131 1.0499 0.0000 4 6 2.2438 -1.2762 -0.0006 5 6 1.5516 -2.4840 0.1327 6 6 2.2413 -3.6761 0.1326 7 6 3.6313 -3.6791 0.0000 8 6 4.3713 -4.9607 -0.0006 9 8 5.5812 -4.9638 -0.1155 10 7 3.7036 -6.1244 0.1274 11 6 4.3814 -7.3326 0.0021 12 6 5.4463 -7.4415 -0.8925 13 6 6.1194 -8.6209 -1.0162 14 6 5.7331 -9.7328 -0.2421 15 6 6.4251 -10.9566 -0.3642 16 1 7.4643 -10.9624 -0.6582 17 6 5.7649 -12.1627 -0.1042 18 7 4.4598 -12.1874 -0.0120 19 14 6.7465 -13.7373 0.1111 20 1 8.1943 -13.4424 -0.0384 21 1 6.4929 -14.2977 1.4627 22 1 6.3327 -14.7233 -0.9192 23 6 4.6532 -9.6167 0.6553 24 6 3.9896 -8.4309 0.7683 25 6 4.3240 -2.4738 -0.1269 26 6 3.6356 -1.2804 -0.1328 27 6 4.3831 0.0203 -0.2760 28 1 -0.3634 -1.0258 0.0616 29 1 -0.3634 0.5661 0.8576 30 1 -0.3634 0.4596 -0.9192 31 1 0.4765 -2.4820 0.2357 32 1 1.7070 -4.6089 0.2359 33 1 2.7503 -6.1195 0.3068 34 1 5.7413 -6.5883 -1.4854 35 1 6.9467 -8.7024 -1.7058 36 1 4.0020 -13.0235 0.1678 37 1 4.3517 -10.4648 1.2523 38 1 3.1619 -8.3403 1.4560 39 1 5.3995 -2.4771 -0.2246 40 1 4.5605 0.4478 0.7108 41 1 5.3375 -0.1616 -0.7701 42 1 3.7919 0.7154 -0.8721 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001351279303.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:08:27 Heat of formation + Delta-G solvation = -41.075599 kcal Electronic energy + Delta-G solvation = -25167.317103 eV Core-core repulsion = 21462.324506 eV Total energy + Delta-G solvation = -3704.992597 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 323.131 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -41.76693 -40.92822 -39.42025 -38.62450 -36.29387 -34.93465 -33.87444 -33.22776 -31.51348 -30.85546 -30.29761 -28.01871 -27.17385 -25.45724 -23.49947 -22.92199 -22.62978 -21.56668 -20.59753 -19.31416 -18.97402 -18.00589 -17.65752 -17.08672 -16.69428 -16.36177 -16.18056 -15.96623 -15.70990 -15.37638 -15.15621 -14.91081 -14.53729 -14.40214 -14.25289 -14.01628 -13.71461 -13.64164 -13.40629 -13.24752 -13.01323 -12.94722 -12.82077 -12.79889 -12.69182 -12.40376 -12.09073 -11.89874 -11.58572 -11.25264 -11.02771 -10.59606 -10.48588 -10.14568 -9.87240 -9.50951 -8.85820 -8.62637 -6.29822 -0.77021 0.24852 0.74372 1.09676 1.14929 1.40054 1.47843 1.54489 1.96126 2.17161 2.22437 2.68516 2.80336 3.02963 3.60256 3.63885 3.71075 3.73497 4.07328 4.13746 4.27162 4.36024 4.41365 4.45332 4.63289 4.66423 4.69773 4.73794 4.88924 4.91678 5.03695 5.06783 5.11466 5.15328 5.16540 5.24708 5.29845 5.38846 5.44692 5.63780 5.70104 5.85404 5.99037 6.07293 6.34053 6.52539 6.60957 6.64800 6.91434 6.95486 7.26482 8.34135 Molecular weight = 323.13amu Principal moments of inertia in cm(-1) A = 0.038334 B = 0.002138 C = 0.002045 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 730.244267 B =13091.449508 C =13688.272469 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C 0.393 3.607 3 O -0.485 6.485 4 C -0.164 4.164 5 C -0.058 4.058 6 C -0.102 4.102 7 C -0.104 4.104 8 C 0.536 3.464 9 O -0.571 6.571 10 N -0.631 5.631 11 C 0.008 3.992 12 C -0.087 4.087 13 C -0.232 4.232 14 C 0.077 3.923 15 C -0.496 4.496 16 H 0.072 0.928 17 C 0.035 3.965 18 N -0.824 5.824 19 Si 0.984 3.016 20 H -0.263 1.263 21 H -0.262 1.262 22 H -0.265 1.265 23 C -0.166 4.166 24 C -0.108 4.108 25 C -0.093 4.093 26 C -0.045 4.045 27 C -0.118 4.118 28 H 0.110 0.890 29 H 0.105 0.895 30 H 0.107 0.893 31 H 0.188 0.812 32 H 0.162 0.838 33 H 0.418 0.582 34 H 0.099 0.901 35 H 0.094 0.906 36 H 0.290 0.710 37 H 0.112 0.888 38 H 0.129 0.871 39 H 0.124 0.876 40 H 0.076 0.924 41 H 0.066 0.934 42 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.727 17.712 1.760 22.478 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.252 4.252 2 C 0.274 3.726 3 O -0.363 6.363 4 C -0.165 4.165 5 C -0.075 4.075 6 C -0.121 4.121 7 C -0.107 4.107 8 C 0.326 3.674 9 O -0.451 6.451 10 N -0.276 5.276 11 C -0.086 4.086 12 C -0.107 4.107 13 C -0.252 4.252 14 C 0.074 3.926 15 C -0.525 4.525 16 H 0.090 0.910 17 C -0.179 4.179 18 N -0.450 5.450 19 Si 0.805 3.195 20 H -0.187 1.187 21 H -0.186 1.186 22 H -0.190 1.190 23 C -0.186 4.186 24 C -0.128 4.128 25 C -0.112 4.112 26 C -0.046 4.046 27 C -0.174 4.174 28 H 0.129 0.871 29 H 0.123 0.877 30 H 0.125 0.875 31 H 0.205 0.795 32 H 0.179 0.821 33 H 0.256 0.744 34 H 0.117 0.883 35 H 0.112 0.888 36 H 0.100 0.900 37 H 0.130 0.870 38 H 0.146 0.854 39 H 0.142 0.858 40 H 0.095 0.905 41 H 0.085 0.915 42 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges -12.800 18.112 1.693 22.243 hybrid contribution 0.636 -1.002 -0.053 1.188 sum -12.164 17.109 1.640 21.057 Atomic orbital electron populations 1.22295 0.89949 1.06992 1.05998 1.23074 0.93469 0.86385 0.69657 1.90500 1.72540 1.35478 1.37817 1.20883 0.93483 0.96685 1.05460 1.21852 1.02238 0.89259 0.94168 1.21620 0.91442 1.00747 0.98277 1.20084 0.95289 0.91761 1.03553 1.18903 0.87007 0.84613 0.76880 1.90755 1.15743 1.87735 1.50859 1.42735 1.12281 1.03145 1.69436 1.17171 1.01132 0.86270 1.04007 1.20342 0.96568 0.96349 0.97470 1.20819 1.04736 0.94960 1.04667 1.18011 0.92236 0.92761 0.89592 1.19785 0.98502 0.91447 1.42774 0.91010 1.26716 0.95840 1.03977 0.91410 1.69845 1.09633 1.30286 1.35240 0.85133 0.79079 0.76252 0.79085 1.18673 1.18615 1.18954 1.20921 0.99775 0.96843 1.01102 1.20507 1.00939 0.92474 0.98859 1.21134 1.00601 0.90828 0.98651 1.20309 0.93664 0.95388 0.95220 1.21059 0.99683 0.93459 1.03221 0.87146 0.87683 0.87511 0.79503 0.82082 0.74357 0.88313 0.88786 0.89966 0.87016 0.85361 0.85761 0.90532 0.91527 0.89424 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -1.04 10.19 71.23 0.73 -0.32 16 2 C 0.39 5.81 7.16 28.09 0.20 6.01 16 3 O -0.49 -10.44 14.07 -2.87 -0.04 -10.48 16 4 C -0.16 -2.75 5.87 -20.10 -0.12 -2.87 16 5 C -0.06 -0.68 9.42 22.54 0.21 -0.47 16 6 C -0.10 -1.68 9.52 22.49 0.21 -1.46 16 7 C -0.10 -2.67 5.88 -20.03 -0.12 -2.79 16 8 C 0.54 18.66 7.48 86.83 0.65 19.31 16 9 O -0.57 -25.27 14.08 -3.83 -0.05 -25.33 16 10 N -0.63 -20.87 5.24 -305.59 -1.60 -22.48 16 11 C 0.01 0.33 6.27 38.61 0.24 0.57 16 12 C -0.09 -4.26 8.57 22.14 0.19 -4.07 16 13 C -0.23 -12.21 9.74 22.48 0.22 -11.99 16 14 C 0.08 4.21 5.55 -21.27 -0.12 4.09 16 15 C -0.50 -27.06 9.04 23.39 0.21 -26.85 16 16 H 0.07 3.85 7.88 -2.91 -0.02 3.83 16 17 C 0.04 1.76 5.20 85.25 0.44 2.21 16 18 N -0.82 -41.90 10.95 21.83 0.24 -41.66 16 19 Si 0.98 38.01 29.58 68.60 2.03 40.04 16 20 H -0.26 -10.15 7.11 99.48 0.71 -9.44 16 21 H -0.26 -9.60 7.11 99.48 0.71 -8.89 16 22 H -0.26 -9.75 7.11 99.48 0.71 -9.05 16 23 C -0.17 -8.54 8.61 22.48 0.19 -8.35 16 24 C -0.11 -4.73 9.90 22.14 0.22 -4.51 16 25 C -0.09 -2.43 9.20 22.49 0.21 -2.22 16 26 C -0.05 -1.00 5.91 -19.59 -0.12 -1.11 16 27 C -0.12 -2.44 8.72 71.24 0.62 -1.81 16 28 H 0.11 0.00 5.62 -2.39 -0.01 -0.01 16 29 H 0.10 0.42 8.14 -2.39 -0.02 0.40 16 30 H 0.11 0.42 8.14 -2.38 -0.02 0.40 16 31 H 0.19 0.42 5.95 -2.91 -0.02 0.40 16 32 H 0.16 1.70 6.40 -2.91 -0.02 1.69 16 33 H 0.42 9.81 6.85 -92.71 -0.64 9.17 16 34 H 0.10 4.80 6.49 -2.91 -0.02 4.78 16 35 H 0.09 4.80 8.06 -2.91 -0.02 4.77 16 36 H 0.29 13.16 8.30 -92.70 -0.77 12.39 16 37 H 0.11 5.88 6.27 -2.91 -0.02 5.86 16 38 H 0.13 4.59 8.06 -2.91 -0.02 4.56 16 39 H 0.12 3.58 7.63 -2.91 -0.02 3.56 16 40 H 0.08 1.55 8.14 -2.39 -0.02 1.53 16 41 H 0.07 1.28 8.04 -2.38 -0.02 1.26 16 42 H 0.09 1.87 5.84 -2.39 -0.01 1.85 16 Total: -1.00 -72.56 353.28 5.10 -67.47 By element: Atomic # 1 Polarization: 28.63 SS G_CDS: 0.45 Total: 29.07 kcal Atomic # 6 Polarization: -40.71 SS G_CDS: 4.08 Total: -36.63 kcal Atomic # 7 Polarization: -62.77 SS G_CDS: -1.36 Total: -64.14 kcal Atomic # 8 Polarization: -35.72 SS G_CDS: -0.09 Total: -35.81 kcal Atomic # 14 Polarization: 38.01 SS G_CDS: 2.03 Total: 40.04 kcal Total: -72.56 5.10 -67.47 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001351279303.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.392 kcal (2) G-P(sol) polarization free energy of solvation -72.564 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.172 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.097 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.467 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.076 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds