Wall clock time and date at job start Tue Mar 31 2020 13:31:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31557 * 1 3 3 Si 1.86809 * 119.99860 * 2 1 4 4 H 1.48494 * 109.46967 * 270.00223 * 3 2 1 5 5 H 1.48499 * 109.47045 * 30.00159 * 3 2 1 6 6 H 1.48501 * 109.46792 * 150.00282 * 3 2 1 7 7 C 1.38653 * 120.00183 * 180.02562 * 2 1 3 8 8 H 1.07999 * 120.00153 * 0.02562 * 7 2 1 9 9 O 1.34832 * 119.99776 * 179.97438 * 7 2 1 10 10 C 1.35757 * 116.99936 * 174.96630 * 9 7 2 11 11 C 1.38957 * 120.02735 * 5.32205 * 10 9 7 12 12 C 1.38134 * 120.06922 * 180.02562 * 11 10 9 13 13 C 1.38188 * 120.14357 * 359.97438 * 12 11 10 14 14 C 1.38945 * 120.06424 * 0.02562 * 13 12 11 15 15 N 1.39851 * 120.03606 * 179.97438 * 14 13 12 16 16 C 1.34775 * 119.99686 * 144.89772 * 15 14 13 17 17 O 1.21558 * 120.00092 * 4.52790 * 16 15 14 18 18 C 1.47812 * 119.99987 * 184.52312 * 16 15 14 19 19 C 1.39602 * 120.14357 * 359.72529 * 18 16 15 20 20 C 1.37954 * 119.84818 * 179.74735 * 19 18 16 21 21 C 1.38363 * 120.14787 * 0.54873 * 20 19 18 22 22 C 1.50696 * 119.85254 * 179.72190 * 21 20 19 23 23 C 1.52996 * 117.49946 * 8.72768 * 22 21 20 24 24 C 1.53007 * 117.49905 * 300.06920 * 22 21 20 25 25 C 1.38362 * 120.29452 * 359.70393 * 21 20 19 26 26 C 1.37953 * 120.14995 * 0.02562 * 25 21 20 27 27 C 1.38727 * 120.03298 * 185.35307 * 10 9 7 28 28 H 0.96993 * 120.00181 * 359.97438 * 1 2 3 29 29 H 1.07999 * 119.96807 * 0.05164 * 11 10 9 30 30 H 1.07995 * 119.92665 * 179.97438 * 12 11 10 31 31 H 1.08006 * 119.96788 * 179.97438 * 13 12 11 32 32 H 0.96998 * 120.00152 * 324.89958 * 15 14 13 33 33 H 1.07998 * 120.07315 * 0.02562 * 19 18 16 34 34 H 1.08003 * 119.92522 * 180.25161 * 20 19 18 35 35 H 1.08998 * 115.54892 * 154.39775 * 22 21 20 36 36 H 1.09004 * 117.50204 * 359.97438 * 23 22 21 37 37 H 1.09003 * 117.50116 * 145.01766 * 23 22 21 38 38 H 1.09002 * 117.49359 * 214.98119 * 24 22 21 39 39 H 1.09000 * 117.49965 * 359.97438 * 24 22 21 40 40 H 1.08004 * 119.92634 * 180.02562 * 25 21 20 41 41 H 1.07999 * 120.07783 * 179.97438 * 26 25 21 42 42 H 1.07995 * 120.07212 * 0.25184 * 27 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3156 0.0000 0.0000 3 14 2.2496 1.6178 0.0000 4 1 2.4970 2.0465 -1.4000 5 1 1.4470 2.6527 0.7001 6 1 3.5472 1.4402 0.7000 7 6 2.0089 -1.2007 -0.0005 8 1 1.4689 -2.1361 -0.0014 9 8 3.3572 -1.2007 -0.0011 10 6 3.9736 -2.4056 0.1046 11 6 3.2221 -3.5743 0.0955 12 6 3.8484 -4.8008 0.2035 13 6 5.2236 -4.8698 0.3202 14 6 5.9807 -3.7048 0.3299 15 7 7.3724 -3.7754 0.4487 16 6 8.1500 -2.8871 -0.2015 17 8 7.6413 -1.9754 -0.8242 18 6 9.6213 -3.0215 -0.1574 19 6 10.2088 -4.0640 0.5615 20 6 11.5825 -4.1868 0.5943 21 6 12.3779 -3.2729 -0.0740 22 6 13.8780 -3.4097 -0.0286 23 6 14.4527 -4.6834 0.5944 24 6 14.5513 -3.3525 1.3442 25 6 11.8022 -2.2343 -0.7840 26 6 10.4297 -2.1032 -0.8296 27 6 5.3543 -2.4712 0.2223 28 1 -0.4850 0.8400 0.0004 29 1 2.1472 -3.5238 0.0036 30 1 3.2620 -5.7076 0.1966 31 1 5.7103 -5.8303 0.4049 32 1 7.7779 -4.4635 0.9989 33 1 9.5891 -4.7754 1.0871 34 1 12.0381 -4.9952 1.1467 35 1 14.4154 -2.9748 -0.8713 36 1 13.7458 -5.4224 0.9719 37 1 15.3684 -5.0864 0.1618 38 1 15.5319 -2.8804 1.4044 39 1 13.9094 -3.2156 2.2144 40 1 12.4288 -1.5246 -1.3038 41 1 9.9815 -1.2918 -1.3839 42 1 5.9402 -1.5640 0.2341 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001354523521.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:31:39 Heat of formation + Delta-G solvation = 23.932522 kcal Electronic energy + Delta-G solvation = -25106.488696 eV Core-core repulsion = 21404.315063 eV Total energy + Delta-G solvation = -3702.173633 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 323.131 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -40.69918 -39.62149 -38.68784 -37.05430 -36.49430 -34.28533 -32.34904 -31.56483 -31.06298 -29.60102 -28.52786 -25.34866 -24.95566 -23.31692 -22.65210 -22.58536 -21.51301 -20.89156 -20.08904 -18.47397 -17.94001 -17.29930 -16.82508 -15.78980 -15.44179 -15.27229 -15.24563 -15.09396 -14.76377 -14.38771 -14.11937 -13.78899 -13.71507 -13.62516 -13.17688 -13.07624 -12.74959 -12.37724 -12.26303 -12.04483 -11.78810 -11.67856 -11.41291 -11.21749 -11.08855 -10.99263 -10.81756 -10.79846 -10.22488 -9.90403 -9.72643 -9.31143 -9.26450 -8.93523 -8.83691 -7.80987 -7.30629 -6.38309 -4.04754 0.52121 1.05881 1.97809 2.23934 2.74060 3.10293 3.27469 3.31173 3.38046 3.47442 3.72415 4.05811 4.28994 4.33828 4.41730 4.45386 4.53579 4.58349 4.60806 4.82253 4.98377 5.00991 5.14680 5.15407 5.21597 5.32470 5.46830 5.57125 5.60088 5.60228 5.69542 5.72224 5.97644 6.06100 6.06794 6.13056 6.20003 6.28682 6.50897 6.54546 6.80595 6.93740 7.12127 7.33455 7.58296 7.59070 7.83348 8.05655 8.23548 8.97199 9.60451 10.69021 Molecular weight = 323.13amu Principal moments of inertia in cm(-1) A = 0.021246 B = 0.002427 C = 0.002221 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1317.559558 B =11531.957491 C =12605.679278 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.879 5.879 2 C 0.064 3.936 3 Si 0.904 3.096 4 H -0.273 1.273 5 H -0.283 1.283 6 H -0.259 1.259 7 C -0.388 4.388 8 H 0.108 0.892 9 O -0.213 6.213 10 C 0.173 3.827 11 C -0.231 4.231 12 C -0.060 4.060 13 C -0.226 4.226 14 C 0.172 3.828 15 N -0.664 5.664 16 C 0.551 3.449 17 O -0.508 6.508 18 C -0.133 4.133 19 C -0.082 4.082 20 C -0.130 4.130 21 C -0.029 4.029 22 C -0.124 4.124 23 C -0.176 4.176 24 C -0.167 4.167 25 C -0.121 4.121 26 C -0.054 4.054 27 C -0.186 4.186 28 H 0.279 0.721 29 H 0.135 0.865 30 H 0.115 0.885 31 H 0.110 0.890 32 H 0.405 0.595 33 H 0.127 0.873 34 H 0.129 0.871 35 H 0.115 0.885 36 H 0.100 0.900 37 H 0.099 0.901 38 H 0.099 0.901 39 H 0.098 0.902 40 H 0.130 0.870 41 H 0.140 0.860 42 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 27.548 -10.629 2.538 29.637 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.517 5.517 2 C -0.139 4.139 3 Si 0.729 3.271 4 H -0.198 1.198 5 H -0.208 1.208 6 H -0.183 1.183 7 C -0.464 4.464 8 H 0.125 0.875 9 O -0.118 6.118 10 C 0.120 3.880 11 C -0.251 4.251 12 C -0.079 4.079 13 C -0.247 4.247 14 C 0.079 3.921 15 N -0.309 5.309 16 C 0.339 3.661 17 O -0.383 6.383 18 C -0.136 4.136 19 C -0.100 4.100 20 C -0.148 4.148 21 C -0.030 4.030 22 C -0.142 4.142 23 C -0.213 4.213 24 C -0.204 4.204 25 C -0.139 4.139 26 C -0.072 4.072 27 C -0.208 4.208 28 H 0.089 0.911 29 H 0.152 0.848 30 H 0.133 0.867 31 H 0.128 0.872 32 H 0.241 0.759 33 H 0.145 0.855 34 H 0.147 0.853 35 H 0.133 0.867 36 H 0.118 0.882 37 H 0.117 0.883 38 H 0.117 0.883 39 H 0.116 0.884 40 H 0.148 0.852 41 H 0.157 0.843 42 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges 27.093 -9.588 2.055 28.813 hybrid contribution 0.299 0.212 0.224 0.430 sum 27.392 -9.375 2.280 29.041 Atomic orbital electron populations 1.69644 1.05529 1.28479 1.48058 1.24458 0.95025 0.98837 0.95618 0.86194 0.80371 0.81389 0.79106 1.19807 1.20830 1.18254 1.20787 0.76847 0.96663 1.52079 0.87510 1.83590 1.22591 1.25588 1.80011 1.18873 0.91093 0.85611 0.92463 1.21312 1.01304 0.91827 1.10614 1.20557 0.93369 0.96885 0.97070 1.20345 0.94181 0.95525 1.14693 1.17145 0.80829 0.93484 1.00602 1.43253 1.05133 1.33562 1.48959 1.18367 0.86500 0.82127 0.79130 1.90846 1.74650 1.31347 1.41419 1.19941 0.92658 0.98492 1.02503 1.21283 0.95119 0.96556 0.97088 1.20951 0.93091 0.99772 1.00979 1.19345 0.93366 0.94429 0.95819 1.21105 0.91515 1.03471 0.98093 1.23102 1.03065 0.91110 1.03988 1.23060 1.02098 1.00663 0.94603 1.20946 0.94459 0.98257 1.00278 1.21316 0.92881 0.97370 0.95679 1.20174 0.92073 0.97315 1.11190 0.91070 0.84779 0.86683 0.87153 0.75869 0.85482 0.85331 0.86659 0.88185 0.88280 0.88281 0.88383 0.85215 0.84261 0.84826 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -25.78 13.96 55.48 0.77 -25.01 16 2 C 0.06 1.84 5.49 -17.52 -0.10 1.74 16 3 Si 0.90 22.53 28.62 -169.99 -4.86 17.66 16 4 H -0.27 -6.71 7.11 56.52 0.40 -6.31 16 5 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 6 H -0.26 -6.55 7.11 56.52 0.40 -6.15 16 7 C -0.39 -11.22 9.95 30.89 0.31 -10.91 16 8 H 0.11 3.11 5.43 -52.49 -0.29 2.83 16 9 O -0.21 -5.91 8.58 0.02 0.00 -5.91 16 10 C 0.17 4.22 6.64 -39.13 -0.26 3.96 16 11 C -0.23 -5.08 9.17 -39.35 -0.36 -5.44 16 12 C -0.06 -1.08 10.03 -39.64 -0.40 -1.48 16 13 C -0.23 -3.77 9.96 -39.34 -0.39 -4.16 16 14 C 0.17 3.14 6.29 -83.74 -0.53 2.61 16 15 N -0.66 -9.51 5.28 -10.74 -0.06 -9.57 16 16 C 0.55 8.60 7.61 -12.35 -0.09 8.50 16 17 O -0.51 -10.14 13.79 5.31 0.07 -10.06 16 18 C -0.13 -1.59 5.87 -104.97 -0.62 -2.21 16 19 C -0.08 -0.73 9.54 -39.18 -0.37 -1.11 16 20 C -0.13 -1.02 9.28 -39.64 -0.37 -1.39 16 21 C -0.03 -0.24 5.62 -104.53 -0.59 -0.83 16 22 C -0.12 -0.77 6.03 -91.77 -0.55 -1.32 16 23 C -0.18 -0.88 9.86 -26.70 -0.26 -1.14 16 24 C -0.17 -0.88 10.16 -26.69 -0.27 -1.15 16 25 C -0.12 -1.09 9.72 -39.64 -0.39 -1.48 16 26 C -0.05 -0.61 9.60 -39.18 -0.38 -0.98 16 27 C -0.19 -4.13 8.63 -39.20 -0.34 -4.47 16 28 H 0.28 7.57 8.31 -40.82 -0.34 7.23 16 29 H 0.13 3.06 5.63 -52.49 -0.30 2.76 16 30 H 0.12 1.71 8.06 -52.49 -0.42 1.28 16 31 H 0.11 1.45 8.06 -52.48 -0.42 1.03 16 32 H 0.41 4.10 6.87 -40.82 -0.28 3.82 16 33 H 0.13 0.83 6.41 -52.49 -0.34 0.49 16 34 H 0.13 0.73 6.00 -52.48 -0.32 0.42 16 35 H 0.12 0.61 8.14 -51.93 -0.42 0.19 16 36 H 0.10 0.46 6.17 -51.93 -0.32 0.14 16 37 H 0.10 0.40 8.14 -51.93 -0.42 -0.03 16 38 H 0.10 0.42 8.14 -51.93 -0.42 0.00 16 39 H 0.10 0.55 8.14 -51.93 -0.42 0.13 16 40 H 0.13 0.90 8.06 -52.48 -0.42 0.47 16 41 H 0.14 1.65 7.65 -52.49 -0.40 1.25 16 42 H 0.13 3.13 6.24 -52.49 -0.33 2.80 16 LS Contribution 356.46 15.07 5.37 5.37 Total: -1.00 -33.44 356.46 -9.31 -42.75 By element: Atomic # 1 Polarization: 10.68 SS G_CDS: -4.66 Total: 6.03 kcal Atomic # 6 Polarization: -15.30 SS G_CDS: -5.95 Total: -21.26 kcal Atomic # 7 Polarization: -35.30 SS G_CDS: 0.72 Total: -34.58 kcal Atomic # 8 Polarization: -16.05 SS G_CDS: 0.07 Total: -15.97 kcal Atomic # 14 Polarization: 22.53 SS G_CDS: -4.86 Total: 17.66 kcal Total LS contribution 5.37 Total: 5.37 kcal Total: -33.44 -9.31 -42.75 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001354523521.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 66.680 kcal (2) G-P(sol) polarization free energy of solvation -33.437 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 33.243 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.311 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.747 kcal (6) G-S(sol) free energy of system = (1) + (5) 23.933 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds