Wall clock time and date at job start Tue Mar 31 2020 13:31:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31557 * 1 3 3 Si 1.86809 * 119.99860 * 2 1 4 4 H 1.48494 * 109.46967 * 270.00223 * 3 2 1 5 5 H 1.48499 * 109.47045 * 30.00159 * 3 2 1 6 6 H 1.48501 * 109.46792 * 150.00282 * 3 2 1 7 7 C 1.38653 * 120.00183 * 180.02562 * 2 1 3 8 8 H 1.07999 * 120.00153 * 0.02562 * 7 2 1 9 9 O 1.34832 * 119.99776 * 179.97438 * 7 2 1 10 10 C 1.35757 * 116.99936 * 174.96630 * 9 7 2 11 11 C 1.38957 * 120.02735 * 5.32205 * 10 9 7 12 12 C 1.38134 * 120.06922 * 180.02562 * 11 10 9 13 13 C 1.38188 * 120.14357 * 359.97438 * 12 11 10 14 14 C 1.38945 * 120.06424 * 0.02562 * 13 12 11 15 15 N 1.39851 * 120.03606 * 179.97438 * 14 13 12 16 16 C 1.34775 * 119.99686 * 144.89772 * 15 14 13 17 17 O 1.21558 * 120.00092 * 4.52790 * 16 15 14 18 18 C 1.47812 * 119.99987 * 184.52312 * 16 15 14 19 19 C 1.39602 * 120.14357 * 359.72529 * 18 16 15 20 20 C 1.37954 * 119.84818 * 179.74735 * 19 18 16 21 21 C 1.38363 * 120.14787 * 0.54873 * 20 19 18 22 22 C 1.50696 * 119.85254 * 179.72190 * 21 20 19 23 23 C 1.52996 * 117.49946 * 8.72768 * 22 21 20 24 24 C 1.53007 * 117.49905 * 300.06920 * 22 21 20 25 25 C 1.38362 * 120.29452 * 359.70393 * 21 20 19 26 26 C 1.37953 * 120.14995 * 0.02562 * 25 21 20 27 27 C 1.38727 * 120.03298 * 185.35307 * 10 9 7 28 28 H 0.96993 * 120.00181 * 359.97438 * 1 2 3 29 29 H 1.07999 * 119.96807 * 0.05164 * 11 10 9 30 30 H 1.07995 * 119.92665 * 179.97438 * 12 11 10 31 31 H 1.08006 * 119.96788 * 179.97438 * 13 12 11 32 32 H 0.96998 * 120.00152 * 324.89958 * 15 14 13 33 33 H 1.07998 * 120.07315 * 0.02562 * 19 18 16 34 34 H 1.08003 * 119.92522 * 180.25161 * 20 19 18 35 35 H 1.08998 * 115.54892 * 154.39775 * 22 21 20 36 36 H 1.09004 * 117.50204 * 359.97438 * 23 22 21 37 37 H 1.09003 * 117.50116 * 145.01766 * 23 22 21 38 38 H 1.09002 * 117.49359 * 214.98119 * 24 22 21 39 39 H 1.09000 * 117.49965 * 359.97438 * 24 22 21 40 40 H 1.08004 * 119.92634 * 180.02562 * 25 21 20 41 41 H 1.07999 * 120.07783 * 179.97438 * 26 25 21 42 42 H 1.07995 * 120.07212 * 0.25184 * 27 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3156 0.0000 0.0000 3 14 2.2496 1.6178 0.0000 4 1 2.4970 2.0465 -1.4000 5 1 1.4470 2.6527 0.7001 6 1 3.5472 1.4402 0.7000 7 6 2.0089 -1.2007 -0.0005 8 1 1.4689 -2.1361 -0.0014 9 8 3.3572 -1.2007 -0.0011 10 6 3.9736 -2.4056 0.1046 11 6 3.2221 -3.5743 0.0955 12 6 3.8484 -4.8008 0.2035 13 6 5.2236 -4.8698 0.3202 14 6 5.9807 -3.7048 0.3299 15 7 7.3724 -3.7754 0.4487 16 6 8.1500 -2.8871 -0.2015 17 8 7.6413 -1.9754 -0.8242 18 6 9.6213 -3.0215 -0.1574 19 6 10.2088 -4.0640 0.5615 20 6 11.5825 -4.1868 0.5943 21 6 12.3779 -3.2729 -0.0740 22 6 13.8780 -3.4097 -0.0286 23 6 14.4527 -4.6834 0.5944 24 6 14.5513 -3.3525 1.3442 25 6 11.8022 -2.2343 -0.7840 26 6 10.4297 -2.1032 -0.8296 27 6 5.3543 -2.4712 0.2223 28 1 -0.4850 0.8400 0.0004 29 1 2.1472 -3.5238 0.0036 30 1 3.2620 -5.7076 0.1966 31 1 5.7103 -5.8303 0.4049 32 1 7.7779 -4.4635 0.9989 33 1 9.5891 -4.7754 1.0871 34 1 12.0381 -4.9952 1.1467 35 1 14.4154 -2.9748 -0.8713 36 1 13.7458 -5.4224 0.9719 37 1 15.3684 -5.0864 0.1618 38 1 15.5319 -2.8804 1.4044 39 1 13.9094 -3.2156 2.2144 40 1 12.4288 -1.5246 -1.3038 41 1 9.9815 -1.2918 -1.3839 42 1 5.9402 -1.5640 0.2341 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001354523521.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:31:39 Heat of formation + Delta-G solvation = 4.278730 kcal Electronic energy + Delta-G solvation = -25107.340948 eV Core-core repulsion = 21404.315063 eV Total energy + Delta-G solvation = -3703.025885 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 323.131 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -41.87293 -40.79903 -40.06037 -38.36821 -37.42539 -35.71227 -34.46214 -32.43901 -31.82384 -31.22398 -29.98553 -27.27495 -25.99033 -23.99595 -23.92786 -23.08208 -22.95750 -22.05994 -20.99896 -19.95214 -19.67006 -18.80553 -17.59810 -17.11771 -16.92593 -16.56365 -16.34190 -16.10463 -15.97324 -15.70494 -15.50785 -15.40299 -14.97482 -14.48358 -14.36891 -14.28202 -14.24027 -13.84727 -13.68656 -13.31252 -13.00538 -12.76641 -12.53977 -12.50563 -12.30433 -12.07760 -12.03459 -11.62101 -11.54304 -11.37372 -11.23727 -10.92520 -10.87809 -10.01992 -9.66924 -9.41955 -8.96185 -8.52942 -6.24788 -0.32866 0.35705 0.43151 0.61852 1.25965 1.30340 1.47075 1.70231 1.90155 2.24952 2.64773 2.75645 2.96893 3.13458 3.16453 3.48173 3.70319 3.78031 3.92157 4.00992 4.08662 4.14454 4.27600 4.32528 4.35885 4.37123 4.51416 4.59138 4.67766 4.75336 4.82511 4.87962 4.95629 5.05518 5.14941 5.24766 5.29396 5.31716 5.33660 5.38000 5.40826 5.55652 5.65103 5.75742 5.85102 5.88221 6.18289 6.37727 6.81830 7.05026 7.57866 8.58355 Molecular weight = 323.13amu Principal moments of inertia in cm(-1) A = 0.021246 B = 0.002427 C = 0.002221 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1317.559558 B =11531.957491 C =12605.679278 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.917 5.917 2 C 0.014 3.986 3 Si 0.963 3.037 4 H -0.269 1.269 5 H -0.260 1.260 6 H -0.273 1.273 7 C -0.398 4.398 8 H 0.089 0.911 9 O -0.249 6.249 10 C 0.133 3.867 11 C -0.246 4.246 12 C -0.051 4.051 13 C -0.192 4.192 14 C 0.180 3.820 15 N -0.648 5.648 16 C 0.549 3.451 17 O -0.563 6.563 18 C -0.156 4.156 19 C -0.072 4.072 20 C -0.129 4.129 21 C -0.022 4.022 22 C -0.139 4.139 23 C -0.167 4.167 24 C -0.166 4.166 25 C -0.126 4.126 26 C -0.072 4.072 27 C -0.205 4.205 28 H 0.285 0.715 29 H 0.116 0.884 30 H 0.159 0.841 31 H 0.168 0.832 32 H 0.429 0.571 33 H 0.157 0.843 34 H 0.159 0.841 35 H 0.122 0.878 36 H 0.108 0.892 37 H 0.110 0.890 38 H 0.108 0.892 39 H 0.095 0.905 40 H 0.146 0.854 41 H 0.119 0.881 42 H 0.111 0.889 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 31.387 -14.037 3.642 34.575 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.558 5.558 2 C -0.184 4.184 3 Si 0.786 3.214 4 H -0.194 1.194 5 H -0.184 1.184 6 H -0.198 1.198 7 C -0.474 4.474 8 H 0.107 0.893 9 O -0.157 6.157 10 C 0.084 3.916 11 C -0.266 4.266 12 C -0.069 4.069 13 C -0.212 4.212 14 C 0.085 3.915 15 N -0.295 5.295 16 C 0.339 3.661 17 O -0.441 6.441 18 C -0.159 4.159 19 C -0.090 4.090 20 C -0.146 4.146 21 C -0.022 4.022 22 C -0.157 4.157 23 C -0.204 4.204 24 C -0.203 4.203 25 C -0.144 4.144 26 C -0.091 4.091 27 C -0.226 4.226 28 H 0.095 0.905 29 H 0.134 0.866 30 H 0.176 0.824 31 H 0.185 0.815 32 H 0.270 0.730 33 H 0.174 0.826 34 H 0.176 0.824 35 H 0.140 0.860 36 H 0.126 0.874 37 H 0.128 0.872 38 H 0.127 0.873 39 H 0.113 0.887 40 H 0.163 0.837 41 H 0.137 0.863 42 H 0.129 0.871 Dipole moment (debyes) X Y Z Total from point charges 30.983 -13.063 3.189 33.775 hybrid contribution -0.549 0.957 -0.094 1.107 sum 30.433 -12.106 3.095 32.899 Atomic orbital electron populations 1.69704 1.06475 1.29513 1.50117 1.25168 0.95866 1.01708 0.95706 0.85341 0.78617 0.78296 0.79188 1.19381 1.18439 1.19781 1.20774 0.77811 0.96388 1.52426 0.89319 1.83539 1.21629 1.27587 1.82927 1.19375 0.92170 0.85614 0.94472 1.21379 1.00552 0.92976 1.11681 1.21041 0.94496 0.96541 0.94847 1.20951 0.93471 0.96983 1.09836 1.17308 0.82815 0.92582 0.98773 1.43132 1.03382 1.34020 1.48961 1.19027 0.88101 0.81040 0.77895 1.90830 1.75883 1.33601 1.43833 1.19721 0.90125 1.00773 1.05312 1.21554 0.96047 0.95567 0.95820 1.21308 0.92563 1.00200 1.00539 1.19673 0.94766 0.93487 0.94321 1.21170 0.90192 1.05237 0.99116 1.23224 1.03454 0.90741 1.02950 1.23128 1.02331 1.01120 0.93721 1.21115 0.93466 0.99146 1.00679 1.21314 0.94110 0.97315 0.96333 1.20218 0.91164 0.98581 1.12644 0.90499 0.86644 0.82365 0.81454 0.72950 0.82575 0.82383 0.85976 0.87410 0.87159 0.87319 0.88666 0.83666 0.86280 0.87144 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -56.12 13.96 21.61 0.30 -55.81 16 2 C 0.01 0.87 5.49 84.83 0.47 1.33 16 3 Si 0.96 48.66 28.62 68.60 1.96 50.62 16 4 H -0.27 -13.23 7.11 99.48 0.71 -12.52 16 5 H -0.26 -12.01 7.11 99.48 0.71 -11.30 16 6 H -0.27 -14.25 7.11 99.48 0.71 -13.54 16 7 C -0.40 -24.53 9.95 67.92 0.68 -23.85 16 8 H 0.09 5.58 5.43 -2.91 -0.02 5.57 16 9 O -0.25 -14.80 8.58 -22.84 -0.20 -15.00 16 10 C 0.13 6.85 6.64 22.56 0.15 7.00 16 11 C -0.25 -11.05 9.17 22.42 0.21 -10.85 16 12 C -0.05 -1.68 10.03 22.23 0.22 -1.45 16 13 C -0.19 -5.51 9.96 22.43 0.22 -5.29 16 14 C 0.18 6.21 6.29 38.16 0.24 6.45 16 15 N -0.65 -17.02 5.28 -306.17 -1.62 -18.64 16 16 C 0.55 17.02 7.61 86.78 0.66 17.68 16 17 O -0.56 -23.67 13.79 -3.90 -0.05 -23.72 16 18 C -0.16 -3.59 5.87 -20.09 -0.12 -3.71 16 19 C -0.07 -1.04 9.54 22.53 0.21 -0.82 16 20 C -0.13 -1.52 9.28 22.23 0.21 -1.31 16 21 C -0.02 -0.30 5.62 -19.81 -0.11 -0.41 16 22 C -0.14 -1.27 6.03 -11.54 -0.07 -1.34 16 23 C -0.17 -0.99 9.86 30.62 0.30 -0.69 16 24 C -0.17 -1.20 10.16 30.62 0.31 -0.89 16 25 C -0.13 -2.12 9.72 22.23 0.22 -1.90 16 26 C -0.07 -1.64 9.60 22.53 0.22 -1.43 16 27 C -0.20 -9.39 8.63 22.51 0.19 -9.20 16 28 H 0.29 16.00 8.31 -92.71 -0.77 15.23 16 29 H 0.12 5.57 5.63 -2.91 -0.02 5.56 16 30 H 0.16 3.90 8.06 -2.91 -0.02 3.88 16 31 H 0.17 3.06 8.06 -2.91 -0.02 3.04 16 32 H 0.43 6.79 6.87 -92.71 -0.64 6.15 16 33 H 0.16 1.23 6.41 -2.91 -0.02 1.21 16 34 H 0.16 0.95 6.00 -2.91 -0.02 0.93 16 35 H 0.12 0.95 8.14 -2.39 -0.02 0.93 16 36 H 0.11 0.47 6.17 -2.38 -0.01 0.45 16 37 H 0.11 0.44 8.14 -2.39 -0.02 0.42 16 38 H 0.11 0.58 8.14 -2.39 -0.02 0.56 16 39 H 0.09 0.76 8.14 -2.39 -0.02 0.74 16 40 H 0.15 1.86 8.06 -2.91 -0.02 1.84 16 41 H 0.12 3.11 7.65 -2.91 -0.02 3.09 16 42 H 0.11 5.55 6.24 -2.91 -0.02 5.53 16 Total: -1.00 -80.52 356.46 5.05 -75.47 By element: Atomic # 1 Polarization: 17.32 SS G_CDS: 0.44 Total: 17.76 kcal Atomic # 6 Polarization: -34.88 SS G_CDS: 4.21 Total: -30.68 kcal Atomic # 7 Polarization: -73.14 SS G_CDS: -1.31 Total: -74.45 kcal Atomic # 8 Polarization: -38.47 SS G_CDS: -0.25 Total: -38.72 kcal Atomic # 14 Polarization: 48.66 SS G_CDS: 1.96 Total: 50.62 kcal Total: -80.52 5.05 -75.47 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001354523521.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 79.748 kcal (2) G-P(sol) polarization free energy of solvation -80.516 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.768 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.047 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.469 kcal (6) G-S(sol) free energy of system = (1) + (5) 4.279 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds