Wall clock time and date at job start Tue Mar 31 2020 13:48:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.38279 * 120.12067 * 2 1 4 4 C 1.37929 * 120.35571 * 179.84131 * 3 2 1 5 5 C 1.39291 * 120.23613 * 0.04027 * 4 3 2 6 6 C 1.38883 * 118.87798 * 0.31153 * 5 4 3 7 7 C 1.37737 * 120.78258 * 359.48624 * 6 5 4 8 8 C 1.51645 * 107.03874 * 179.47368 * 6 5 4 9 9 H 1.08999 * 110.93858 * 102.80616 * 8 6 5 10 10 N 1.46499 * 110.93703 * 226.45660 * 8 6 5 11 11 C 1.34776 * 120.00100 * 201.99460 * 10 8 6 12 12 O 1.21603 * 119.99765 * 359.97438 * 11 10 8 13 13 C 1.47431 * 120.00075 * 179.97438 * 11 10 8 14 14 C 1.39227 * 120.28465 * 355.57718 * 13 11 10 15 15 C 1.38213 * 120.09339 * 179.74610 * 14 13 11 16 16 C 1.38829 * 120.67321 * 0.56025 * 15 14 13 17 17 C 1.37596 * 120.57328 * 359.69138 * 16 15 14 18 18 C 1.40700 * 119.87966 * 0.02851 * 17 16 15 19 19 C 1.40893 * 120.32768 * 180.02562 * 18 17 16 20 20 H 1.07998 * 119.99977 * 141.35721 * 19 18 17 21 21 C 1.40269 * 120.00022 * 321.35568 * 19 18 17 22 22 N 1.30632 * 120.00001 * 173.98033 * 21 19 18 23 23 Si 1.86799 * 119.99865 * 353.98060 * 21 19 18 24 24 H 1.48502 * 109.47129 * 89.35962 * 23 21 19 25 25 H 1.48509 * 109.47150 * 209.35767 * 23 21 19 26 26 H 1.48498 * 109.47246 * 329.35611 * 23 21 19 27 27 C 1.54709 * 101.95709 * 344.62760 * 8 6 5 28 28 O 1.36133 * 129.88127 * 180.97015 * 5 4 3 29 29 H 1.08992 * 109.47017 * 90.00064 * 1 2 3 30 30 H 1.09002 * 109.47296 * 210.00463 * 1 2 3 31 31 H 1.09003 * 109.46909 * 330.00070 * 1 2 3 32 32 H 1.08002 * 119.82257 * 359.85455 * 3 2 1 33 33 H 1.08003 * 119.88527 * 180.02562 * 4 3 2 34 34 H 1.08001 * 120.00915 * 180.33481 * 7 6 5 35 35 H 0.97002 * 120.00357 * 21.98474 * 10 8 6 36 36 H 1.08006 * 119.95077 * 0.02562 * 14 13 11 37 37 H 1.08000 * 119.66210 * 180.27281 * 15 14 13 38 38 H 1.08002 * 119.71299 * 179.72279 * 16 15 14 39 39 H 1.07997 * 120.05993 * 180.02562 * 17 16 15 40 40 H 0.97000 * 119.99637 * 180.02562 * 22 21 19 41 41 H 1.08997 * 110.74524 * 143.59598 * 27 8 6 42 42 H 1.08996 * 110.74942 * 266.94273 * 27 8 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2009 1.1961 0.0000 4 6 3.5802 1.2017 0.0033 5 6 4.2866 0.0012 0.0058 6 6 3.5785 -1.1936 -0.0017 7 6 2.2012 -1.1968 -0.0008 8 6 4.5994 -2.3150 -0.0101 9 1 4.6955 -2.7616 0.9795 10 7 4.2539 -3.3299 -1.0085 11 6 4.7386 -4.5821 -0.8921 12 8 5.4631 -4.8693 0.0414 13 6 4.3905 -5.6036 -1.8965 14 6 3.4894 -5.3077 -2.9157 15 6 3.1698 -6.2667 -3.8583 16 6 3.7305 -7.5352 -3.7963 17 6 4.6203 -7.8591 -2.7979 18 6 4.9668 -6.8992 -1.8293 19 6 5.8773 -7.2204 -0.8032 20 1 6.6009 -6.4891 -0.4749 21 6 5.8438 -8.4901 -0.2080 22 7 6.7602 -8.8296 0.6588 23 14 4.4886 -9.6957 -0.6549 24 1 4.9162 -10.5114 -1.8198 25 1 4.2183 -10.5875 0.5014 26 1 3.2542 -8.9465 -1.0015 27 6 5.8940 -1.5669 -0.4073 28 8 5.6294 -0.2214 0.0269 29 1 -0.3633 0.0000 -1.0276 30 1 -0.3634 -0.8899 0.5139 31 1 -0.3633 0.8900 0.5138 32 1 1.6600 2.1309 -0.0024 33 1 4.1145 2.1403 0.0037 34 1 1.6632 -2.1333 -0.0012 35 1 3.6762 -3.1008 -1.7533 36 1 3.0428 -4.3259 -2.9725 37 1 2.4733 -6.0283 -4.6485 38 1 3.4665 -8.2741 -4.5384 39 1 5.0518 -8.8483 -2.7578 40 1 6.7373 -9.7078 1.0700 41 1 6.7553 -1.9803 0.1174 42 1 6.0446 -1.6018 -1.4863 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001362085948.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:48:26 Heat of formation + Delta-G solvation = -17.460414 kcal Electronic energy + Delta-G solvation = -26389.793728 eV Core-core repulsion = 22685.825163 eV Total energy + Delta-G solvation = -3703.968565 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 323.131 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -41.27930 -39.02571 -37.85536 -37.05366 -34.48814 -33.60084 -32.05356 -31.43695 -30.52401 -30.04324 -28.37821 -26.72852 -25.42116 -23.52592 -22.69374 -21.78859 -21.24755 -20.61739 -19.64933 -17.77783 -17.45016 -16.89883 -16.60903 -16.09005 -15.38975 -15.30990 -14.54591 -14.29841 -14.13867 -14.11420 -13.86602 -13.79043 -13.63786 -13.51559 -12.95183 -12.73025 -12.51460 -12.31897 -12.25475 -12.15611 -11.98479 -11.69102 -11.54189 -11.00518 -10.86344 -10.77290 -10.71544 -10.50748 -10.17154 -9.84434 -9.32682 -9.14168 -8.63469 -8.62147 -8.06830 -7.89234 -7.65068 -6.92514 -4.52287 1.13604 1.25105 2.01645 2.54121 3.05785 3.14642 3.20813 3.25079 3.45820 3.85714 3.88421 3.93435 4.32466 4.50000 4.65885 4.76584 4.84848 5.08077 5.17894 5.21868 5.31501 5.34240 5.45257 5.54817 5.66078 5.66945 5.73939 5.77737 5.90841 5.96550 6.03636 6.14290 6.29942 6.32001 6.43189 6.44015 6.51670 6.72999 6.89120 7.04737 7.11809 7.16448 7.31668 7.51565 7.67687 7.94281 8.18176 8.42496 8.56169 8.77644 9.19989 10.05592 Molecular weight = 323.13amu Principal moments of inertia in cm(-1) A = 0.016625 B = 0.003480 C = 0.003209 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1683.855308 B = 8043.707258 C = 8724.086917 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.108 4.108 2 C -0.121 4.121 3 C -0.083 4.083 4 C -0.140 4.140 5 C 0.110 3.890 6 C -0.179 4.179 7 C -0.057 4.057 8 C 0.167 3.833 9 H 0.113 0.887 10 N -0.736 5.736 11 C 0.561 3.439 12 O -0.521 6.521 13 C -0.248 4.248 14 C -0.042 4.042 15 C -0.251 4.251 16 C -0.065 4.065 17 C -0.225 4.225 18 C 0.119 3.881 19 C -0.397 4.397 20 H 0.116 0.884 21 C 0.079 3.921 22 N -0.795 5.795 23 Si 0.908 3.092 24 H -0.268 1.268 25 H -0.289 1.289 26 H -0.243 1.243 27 C 0.040 3.960 28 O -0.304 6.304 29 H 0.068 0.932 30 H 0.066 0.934 31 H 0.064 0.936 32 H 0.129 0.871 33 H 0.128 0.872 34 H 0.126 0.874 35 H 0.396 0.604 36 H 0.095 0.905 37 H 0.097 0.903 38 H 0.097 0.903 39 H 0.106 0.894 40 H 0.287 0.713 41 H 0.115 0.885 42 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.544 14.419 -2.767 17.512 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C -0.121 4.121 3 C -0.101 4.101 4 C -0.158 4.158 5 C 0.064 3.936 6 C -0.180 4.180 7 C -0.075 4.075 8 C 0.061 3.939 9 H 0.131 0.869 10 N -0.391 5.391 11 C 0.355 3.645 12 O -0.397 6.397 13 C -0.253 4.253 14 C -0.061 4.061 15 C -0.270 4.270 16 C -0.083 4.083 17 C -0.244 4.244 18 C 0.114 3.886 19 C -0.424 4.424 20 H 0.133 0.867 21 C -0.141 4.141 22 N -0.419 5.419 23 Si 0.734 3.266 24 H -0.194 1.194 25 H -0.216 1.216 26 H -0.167 1.167 27 C -0.036 4.036 28 O -0.217 6.217 29 H 0.087 0.913 30 H 0.085 0.915 31 H 0.083 0.917 32 H 0.147 0.853 33 H 0.145 0.855 34 H 0.144 0.856 35 H 0.231 0.769 36 H 0.113 0.887 37 H 0.116 0.884 38 H 0.115 0.885 39 H 0.124 0.876 40 H 0.098 0.902 41 H 0.133 0.867 42 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges -8.637 14.165 -1.790 16.687 hybrid contribution -0.772 -0.693 -0.555 1.177 sum -9.410 13.472 -2.345 16.600 Atomic orbital electron populations 1.20698 0.90782 1.02706 1.02244 1.19773 0.96189 0.92607 1.03524 1.20734 0.92712 0.97817 0.98847 1.20211 0.93456 0.95494 1.06672 1.19555 0.83597 0.94258 0.96144 1.20888 0.94774 0.94519 1.07818 1.20238 0.91735 0.98147 0.97420 1.20804 0.90433 0.87119 0.95511 0.86905 1.45997 1.54550 1.10095 1.28496 1.18452 0.79476 0.80835 0.85740 1.90779 1.36361 1.79269 1.33332 1.19375 1.07928 0.97007 1.00996 1.20787 0.94961 0.96863 0.93450 1.20305 1.08554 0.95016 1.03171 1.20760 0.95136 0.95688 0.96764 1.21206 1.05002 1.00180 0.97979 1.17548 0.89325 0.89881 0.91853 1.19965 1.11991 0.97911 1.12510 0.86676 1.26307 0.96106 0.98020 0.93698 1.69545 1.30284 1.21210 1.20858 0.86391 0.83048 0.79583 0.77554 1.19378 1.21632 1.16651 1.24440 0.99518 0.78401 1.01231 1.86861 1.19605 1.33175 1.82075 0.91322 0.91535 0.91667 0.85307 0.85453 0.85561 0.76933 0.88695 0.88442 0.88471 0.87610 0.90234 0.86701 0.89999 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.83 10.02 36.01 0.36 -0.47 16 2 C -0.12 -1.25 5.89 -104.56 -0.62 -1.87 16 3 C -0.08 -0.81 9.68 -39.68 -0.38 -1.20 16 4 C -0.14 -1.58 10.06 -39.30 -0.40 -1.97 16 5 C 0.11 1.51 7.04 -38.95 -0.27 1.24 16 6 C -0.18 -2.46 5.81 -104.10 -0.60 -3.07 16 7 C -0.06 -0.70 9.70 -39.72 -0.39 -1.08 16 8 C 0.17 2.61 3.44 -67.72 -0.23 2.38 16 9 H 0.11 1.96 7.63 -51.93 -0.40 1.56 16 10 N -0.74 -12.33 5.11 -54.67 -0.28 -12.61 16 11 C 0.56 12.20 7.73 -12.52 -0.10 12.11 16 12 O -0.52 -13.27 13.34 5.27 0.07 -13.20 16 13 C -0.25 -5.61 5.92 -104.37 -0.62 -6.23 16 14 C -0.04 -0.80 9.52 -39.22 -0.37 -1.18 16 15 C -0.25 -4.77 10.03 -39.37 -0.39 -5.16 16 16 C -0.06 -1.31 10.01 -39.60 -0.40 -1.71 16 17 C -0.22 -5.18 6.96 -38.89 -0.27 -5.45 16 18 C 0.12 2.97 5.03 -106.54 -0.54 2.44 16 19 C -0.40 -10.90 8.09 -37.81 -0.31 -11.20 16 20 H 0.12 3.48 6.33 -52.49 -0.33 3.15 16 21 C 0.08 2.08 5.50 -17.30 -0.10 1.98 16 22 N -0.80 -21.47 13.92 55.56 0.77 -20.70 16 23 Si 0.91 20.53 24.49 -169.99 -4.16 16.36 16 24 H -0.27 -5.74 6.70 56.52 0.38 -5.36 16 25 H -0.29 -6.34 7.11 56.52 0.40 -5.94 16 26 H -0.24 -5.62 6.70 56.52 0.38 -5.25 16 27 C 0.04 0.59 7.73 38.06 0.29 0.88 16 28 O -0.30 -4.47 11.11 -20.16 -0.22 -4.69 16 29 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 30 H 0.07 0.50 8.09 -51.93 -0.42 0.08 16 31 H 0.06 0.41 8.09 -51.93 -0.42 -0.01 16 32 H 0.13 0.90 8.06 -52.49 -0.42 0.48 16 33 H 0.13 1.20 8.06 -52.48 -0.42 0.78 16 34 H 0.13 1.47 8.06 -52.49 -0.42 1.05 16 35 H 0.40 5.78 6.68 -40.82 -0.27 5.50 16 36 H 0.10 1.48 6.42 -52.48 -0.34 1.15 16 37 H 0.10 1.57 8.06 -52.49 -0.42 1.15 16 38 H 0.10 1.67 8.06 -52.49 -0.42 1.25 16 39 H 0.11 2.41 4.93 -52.49 -0.26 2.15 16 40 H 0.29 6.98 8.29 -40.82 -0.34 6.64 16 41 H 0.11 1.65 8.14 -51.93 -0.42 1.23 16 42 H 0.08 1.14 8.09 -51.93 -0.42 0.72 16 LS Contribution 347.77 15.07 5.24 5.24 Total: -1.00 -29.88 347.77 -8.90 -38.79 By element: Atomic # 1 Polarization: 15.37 SS G_CDS: -5.00 Total: 10.38 kcal Atomic # 6 Polarization: -14.24 SS G_CDS: -5.32 Total: -19.56 kcal Atomic # 7 Polarization: -33.81 SS G_CDS: 0.49 Total: -33.31 kcal Atomic # 8 Polarization: -17.74 SS G_CDS: -0.15 Total: -17.89 kcal Atomic # 14 Polarization: 20.53 SS G_CDS: -4.16 Total: 16.36 kcal Total LS contribution 5.24 Total: 5.24 kcal Total: -29.88 -8.90 -38.79 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001362085948.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.326 kcal (2) G-P(sol) polarization free energy of solvation -29.883 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.557 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.904 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.786 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.460 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds