Wall clock time and date at job start Tue Mar 31 2020 13:48:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.38279 * 120.12067 * 2 1 4 4 C 1.37929 * 120.35571 * 179.84131 * 3 2 1 5 5 C 1.39291 * 120.23613 * 0.04027 * 4 3 2 6 6 C 1.38883 * 118.87798 * 0.31153 * 5 4 3 7 7 C 1.37737 * 120.78258 * 359.48624 * 6 5 4 8 8 C 1.51645 * 107.03874 * 179.47368 * 6 5 4 9 9 H 1.08999 * 110.93858 * 102.80616 * 8 6 5 10 10 N 1.46499 * 110.93703 * 226.45660 * 8 6 5 11 11 C 1.34776 * 120.00100 * 201.99460 * 10 8 6 12 12 O 1.21603 * 119.99765 * 359.97438 * 11 10 8 13 13 C 1.47431 * 120.00075 * 179.97438 * 11 10 8 14 14 C 1.39227 * 120.28465 * 355.57718 * 13 11 10 15 15 C 1.38213 * 120.09339 * 179.74610 * 14 13 11 16 16 C 1.38829 * 120.67321 * 0.56025 * 15 14 13 17 17 C 1.37596 * 120.57328 * 359.69138 * 16 15 14 18 18 C 1.40700 * 119.87966 * 0.02851 * 17 16 15 19 19 C 1.40893 * 120.32768 * 180.02562 * 18 17 16 20 20 H 1.07998 * 119.99977 * 141.35721 * 19 18 17 21 21 C 1.40269 * 120.00022 * 321.35568 * 19 18 17 22 22 N 1.30632 * 120.00001 * 173.98033 * 21 19 18 23 23 Si 1.86799 * 119.99865 * 353.98060 * 21 19 18 24 24 H 1.48502 * 109.47129 * 89.35962 * 23 21 19 25 25 H 1.48509 * 109.47150 * 209.35767 * 23 21 19 26 26 H 1.48498 * 109.47246 * 329.35611 * 23 21 19 27 27 C 1.54709 * 101.95709 * 344.62760 * 8 6 5 28 28 O 1.36133 * 129.88127 * 180.97015 * 5 4 3 29 29 H 1.08992 * 109.47017 * 90.00064 * 1 2 3 30 30 H 1.09002 * 109.47296 * 210.00463 * 1 2 3 31 31 H 1.09003 * 109.46909 * 330.00070 * 1 2 3 32 32 H 1.08002 * 119.82257 * 359.85455 * 3 2 1 33 33 H 1.08003 * 119.88527 * 180.02562 * 4 3 2 34 34 H 1.08001 * 120.00915 * 180.33481 * 7 6 5 35 35 H 0.97002 * 120.00357 * 21.98474 * 10 8 6 36 36 H 1.08006 * 119.95077 * 0.02562 * 14 13 11 37 37 H 1.08000 * 119.66210 * 180.27281 * 15 14 13 38 38 H 1.08002 * 119.71299 * 179.72279 * 16 15 14 39 39 H 1.07997 * 120.05993 * 180.02562 * 17 16 15 40 40 H 0.97000 * 119.99637 * 180.02562 * 22 21 19 41 41 H 1.08997 * 110.74524 * 143.59598 * 27 8 6 42 42 H 1.08996 * 110.74942 * 266.94273 * 27 8 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2009 1.1961 0.0000 4 6 3.5802 1.2017 0.0033 5 6 4.2866 0.0012 0.0058 6 6 3.5785 -1.1936 -0.0017 7 6 2.2012 -1.1968 -0.0008 8 6 4.5994 -2.3150 -0.0101 9 1 4.6955 -2.7616 0.9795 10 7 4.2539 -3.3299 -1.0085 11 6 4.7386 -4.5821 -0.8921 12 8 5.4631 -4.8693 0.0414 13 6 4.3905 -5.6036 -1.8965 14 6 3.4894 -5.3077 -2.9157 15 6 3.1698 -6.2667 -3.8583 16 6 3.7305 -7.5352 -3.7963 17 6 4.6203 -7.8591 -2.7979 18 6 4.9668 -6.8992 -1.8293 19 6 5.8773 -7.2204 -0.8032 20 1 6.6009 -6.4891 -0.4749 21 6 5.8438 -8.4901 -0.2080 22 7 6.7602 -8.8296 0.6588 23 14 4.4886 -9.6957 -0.6549 24 1 4.9162 -10.5114 -1.8198 25 1 4.2183 -10.5875 0.5014 26 1 3.2542 -8.9465 -1.0015 27 6 5.8940 -1.5669 -0.4073 28 8 5.6294 -0.2214 0.0269 29 1 -0.3633 0.0000 -1.0276 30 1 -0.3634 -0.8899 0.5139 31 1 -0.3633 0.8900 0.5138 32 1 1.6600 2.1309 -0.0024 33 1 4.1145 2.1403 0.0037 34 1 1.6632 -2.1333 -0.0012 35 1 3.6762 -3.1008 -1.7533 36 1 3.0428 -4.3259 -2.9725 37 1 2.4733 -6.0283 -4.6485 38 1 3.4665 -8.2741 -4.5384 39 1 5.0518 -8.8483 -2.7578 40 1 6.7373 -9.7078 1.0700 41 1 6.7553 -1.9803 0.1174 42 1 6.0446 -1.6018 -1.4863 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001362085948.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:48:25 Heat of formation + Delta-G solvation = -36.186041 kcal Electronic energy + Delta-G solvation = -26390.605732 eV Core-core repulsion = 22685.825163 eV Total energy + Delta-G solvation = -3704.780570 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 323.131 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -42.38391 -40.69791 -38.88932 -38.66154 -36.05383 -35.38769 -32.89575 -32.78120 -32.31080 -31.42240 -29.63957 -27.55651 -27.19980 -24.80773 -24.05217 -23.22874 -22.42205 -21.93654 -21.26001 -19.50196 -18.78233 -18.22153 -17.87498 -17.37510 -17.04707 -16.41709 -16.06613 -15.83028 -15.62365 -15.52919 -15.16229 -15.03134 -14.60159 -14.52962 -14.50008 -14.16078 -14.01151 -13.85157 -13.50607 -13.23586 -13.11774 -12.90602 -12.70636 -12.57449 -12.53382 -12.22530 -12.01423 -11.80758 -11.73585 -11.61733 -11.10678 -10.51095 -10.25588 -9.89783 -9.56076 -9.42839 -9.04501 -8.81485 -6.49149 0.20308 0.29960 0.33925 0.81818 1.23341 1.36170 1.45301 2.04163 2.09853 2.17700 2.33635 2.69717 2.74765 3.22548 3.41777 3.53916 3.83475 3.94018 4.04752 4.16310 4.21105 4.32023 4.39681 4.40244 4.41564 4.54650 4.60593 4.71897 4.76423 4.82455 4.92360 4.98733 5.06823 5.15289 5.29268 5.30762 5.33842 5.42271 5.45251 5.61152 5.65303 5.66534 5.83866 5.93041 6.12956 6.23763 6.43950 6.60225 6.75913 6.82694 7.51768 8.24087 Molecular weight = 323.13amu Principal moments of inertia in cm(-1) A = 0.016625 B = 0.003480 C = 0.003209 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1683.855308 B = 8043.707258 C = 8724.086917 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.107 4.107 2 C -0.114 4.114 3 C -0.074 4.074 4 C -0.138 4.138 5 C 0.083 3.917 6 C -0.191 4.191 7 C -0.069 4.069 8 C 0.165 3.835 9 H 0.084 0.916 10 N -0.711 5.711 11 C 0.558 3.442 12 O -0.569 6.569 13 C -0.263 4.263 14 C -0.040 4.040 15 C -0.226 4.226 16 C -0.060 4.060 17 C -0.246 4.246 18 C 0.103 3.897 19 C -0.444 4.444 20 H 0.063 0.937 21 C 0.034 3.966 22 N -0.854 5.854 23 Si 0.968 3.032 24 H -0.246 1.246 25 H -0.283 1.283 26 H -0.249 1.249 27 C 0.045 3.955 28 O -0.314 6.314 29 H 0.081 0.919 30 H 0.066 0.934 31 H 0.084 0.916 32 H 0.166 0.834 33 H 0.147 0.853 34 H 0.128 0.872 35 H 0.410 0.590 36 H 0.138 0.862 37 H 0.146 0.854 38 H 0.138 0.862 39 H 0.104 0.896 40 H 0.292 0.708 41 H 0.105 0.895 42 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.129 16.565 -5.950 22.571 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C -0.114 4.114 3 C -0.092 4.092 4 C -0.156 4.156 5 C 0.037 3.963 6 C -0.192 4.192 7 C -0.087 4.087 8 C 0.060 3.940 9 H 0.102 0.898 10 N -0.367 5.367 11 C 0.351 3.649 12 O -0.449 6.449 13 C -0.267 4.267 14 C -0.059 4.059 15 C -0.244 4.244 16 C -0.079 4.079 17 C -0.265 4.265 18 C 0.099 3.901 19 C -0.473 4.473 20 H 0.081 0.919 21 C -0.179 4.179 22 N -0.482 5.482 23 Si 0.790 3.210 24 H -0.171 1.171 25 H -0.209 1.209 26 H -0.173 1.173 27 C -0.031 4.031 28 O -0.228 6.228 29 H 0.100 0.900 30 H 0.085 0.915 31 H 0.103 0.897 32 H 0.184 0.816 33 H 0.165 0.835 34 H 0.146 0.854 35 H 0.248 0.752 36 H 0.156 0.844 37 H 0.163 0.837 38 H 0.156 0.844 39 H 0.121 0.879 40 H 0.102 0.898 41 H 0.124 0.876 42 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges -13.251 16.358 -5.012 21.640 hybrid contribution 0.417 -1.007 0.229 1.114 sum -12.834 15.351 -4.783 20.573 Atomic orbital electron populations 1.20775 0.88510 1.03732 1.03345 1.20156 0.97781 0.91966 1.01536 1.21186 0.92101 0.99159 0.96742 1.20587 0.94281 0.95276 1.05502 1.19883 0.82970 0.95284 0.98118 1.20723 0.95232 0.93337 1.09937 1.20409 0.90999 0.99333 0.97957 1.20752 0.92290 0.87257 0.93739 0.89788 1.45668 1.53426 1.08731 1.28851 1.18589 0.79033 0.82171 0.85099 1.90783 1.38459 1.80454 1.35167 1.19757 1.08451 0.96398 1.02120 1.21223 0.93473 0.99196 0.91973 1.20964 1.06873 0.93768 1.02825 1.21276 0.93314 0.97262 0.96012 1.21310 1.06557 0.99893 0.98694 1.17794 0.89038 0.91737 0.91542 1.19724 1.14054 0.97966 1.15564 0.91861 1.27048 0.98121 0.99331 0.93367 1.69613 1.32768 1.22254 1.23514 0.85498 0.79751 0.77590 0.78137 1.17098 1.20944 1.17252 1.24281 0.98665 0.78719 1.01431 1.86830 1.20777 1.32569 1.82604 0.90031 0.91542 0.89732 0.81629 0.83550 0.85392 0.75232 0.84426 0.83658 0.84422 0.87851 0.89765 0.87648 0.89267 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.20 10.02 71.24 0.71 -0.48 16 2 C -0.11 -1.97 5.89 -19.83 -0.12 -2.09 16 3 C -0.07 -1.16 9.68 22.21 0.21 -0.94 16 4 C -0.14 -2.76 10.06 22.45 0.23 -2.53 16 5 C 0.08 2.21 7.04 22.68 0.16 2.37 16 6 C -0.19 -5.19 5.81 -19.53 -0.11 -5.31 16 7 C -0.07 -1.55 9.70 22.18 0.22 -1.34 16 8 C 0.17 5.40 3.44 45.13 0.16 5.56 16 9 H 0.08 3.21 7.63 -2.39 -0.02 3.19 16 10 N -0.71 -24.10 5.11 -445.14 -2.28 -26.37 16 11 C 0.56 25.32 7.73 86.66 0.67 25.99 16 12 O -0.57 -31.68 13.34 -4.04 -0.05 -31.74 16 13 C -0.26 -11.87 5.92 -19.70 -0.12 -11.99 16 14 C -0.04 -1.39 9.52 22.50 0.21 -1.17 16 15 C -0.23 -7.23 10.03 22.41 0.22 -7.00 16 16 C -0.06 -2.16 10.01 22.26 0.22 -1.94 16 17 C -0.25 -11.02 6.96 22.72 0.16 -10.86 16 18 C 0.10 5.30 5.03 -21.11 -0.11 5.19 16 19 C -0.44 -26.47 8.09 23.41 0.19 -26.28 16 20 H 0.06 4.31 6.33 -2.91 -0.02 4.29 16 21 C 0.03 1.95 5.50 85.37 0.47 2.42 16 22 N -0.85 -50.23 13.92 21.88 0.30 -49.93 16 23 Si 0.97 43.68 24.49 68.60 1.68 45.36 16 24 H -0.25 -10.09 6.70 99.48 0.67 -9.42 16 25 H -0.28 -12.20 7.11 99.48 0.71 -11.49 16 26 H -0.25 -11.23 6.70 99.48 0.67 -10.56 16 27 C 0.05 1.39 7.73 72.56 0.56 1.95 16 28 O -0.31 -9.43 11.11 -95.06 -1.06 -10.48 16 29 H 0.08 0.76 8.14 -2.39 -0.02 0.74 16 30 H 0.07 0.77 8.09 -2.39 -0.02 0.75 16 31 H 0.08 0.65 8.09 -2.39 -0.02 0.64 16 32 H 0.17 1.39 8.06 -2.91 -0.02 1.36 16 33 H 0.15 2.31 8.06 -2.91 -0.02 2.29 16 34 H 0.13 2.77 8.06 -2.91 -0.02 2.75 16 35 H 0.41 11.25 6.68 -92.71 -0.62 10.63 16 36 H 0.14 3.56 6.42 -2.91 -0.02 3.54 16 37 H 0.15 3.44 8.06 -2.91 -0.02 3.42 16 38 H 0.14 3.87 8.06 -2.91 -0.02 3.84 16 39 H 0.10 4.63 4.93 -2.91 -0.01 4.61 16 40 H 0.29 15.38 8.29 -92.71 -0.77 14.61 16 41 H 0.11 3.37 8.14 -2.39 -0.02 3.35 16 42 H 0.09 2.56 8.09 -2.39 -0.02 2.54 16 Total: -1.00 -73.46 347.77 2.91 -70.55 By element: Atomic # 1 Polarization: 30.70 SS G_CDS: 0.37 Total: 31.07 kcal Atomic # 6 Polarization: -32.40 SS G_CDS: 3.94 Total: -28.46 kcal Atomic # 7 Polarization: -74.33 SS G_CDS: -1.97 Total: -76.30 kcal Atomic # 8 Polarization: -41.11 SS G_CDS: -1.11 Total: -42.22 kcal Atomic # 14 Polarization: 43.68 SS G_CDS: 1.68 Total: 45.36 kcal Total: -73.46 2.91 -70.55 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001362085948.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.363 kcal (2) G-P(sol) polarization free energy of solvation -73.458 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.095 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.909 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.549 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.186 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds