Wall clock time and date at job start Tue Mar 31 2020 14:08:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50692 * 1 3 3 C 1.37911 * 120.08509 * 2 1 4 4 C 1.38392 * 120.16990 * 179.97438 * 3 2 1 5 5 C 1.38419 * 120.34821 * 0.02562 * 4 3 2 6 6 C 1.37871 * 120.17358 * 359.71854 * 5 4 3 7 7 C 1.39835 * 120.08993 * 179.97438 * 2 1 3 8 8 C 1.47169 * 120.17026 * 0.02811 * 7 2 1 9 9 O 1.21249 * 119.99683 * 354.43861 * 8 7 2 10 10 C 1.50700 * 119.99684 * 174.43691 * 8 7 2 11 11 N 1.46497 * 109.46753 * 180.02562 * 10 8 7 12 12 C 1.34773 * 120.00045 * 180.02562 * 11 10 8 13 13 O 1.21606 * 120.00033 * 0.02562 * 12 11 10 14 14 C 1.47436 * 120.00121 * 179.97438 * 12 11 10 15 15 C 1.39219 * 120.28499 * 353.57297 * 14 12 11 16 16 C 1.38222 * 120.09651 * 180.28089 * 15 14 12 17 17 C 1.38827 * 120.67162 * 359.71028 * 16 15 14 18 18 C 1.37595 * 120.57255 * 0.02562 * 17 16 15 19 19 C 1.40715 * 119.88319 * 359.97438 * 18 17 16 20 20 C 1.40880 * 120.32981 * 180.02562 * 19 18 17 21 21 H 1.08000 * 120.00455 * 145.90106 * 20 19 18 22 22 C 1.40282 * 120.00048 * 325.89657 * 20 19 18 23 23 N 1.30624 * 119.99662 * 338.83643 * 22 20 19 24 24 Si 1.86794 * 119.99802 * 158.83671 * 22 20 19 25 25 H 1.48503 * 109.47032 * 180.02562 * 24 22 20 26 26 H 1.48501 * 109.47207 * 299.99723 * 24 22 20 27 27 H 1.48501 * 109.47575 * 59.99842 * 24 22 20 28 28 H 1.08998 * 109.47561 * 264.81160 * 1 2 3 29 29 H 1.09004 * 109.47252 * 24.81552 * 1 2 3 30 30 H 1.09008 * 109.47117 * 144.81406 * 1 2 3 31 31 H 1.08000 * 119.91414 * 359.97438 * 3 2 1 32 32 H 1.07998 * 119.82298 * 179.97438 * 4 3 2 33 33 H 1.08000 * 119.91324 * 179.97438 * 5 4 3 34 34 H 1.07999 * 120.08892 * 180.28275 * 6 5 4 35 35 H 1.09000 * 109.46815 * 60.00300 * 10 8 7 36 36 H 1.08993 * 109.47273 * 299.99983 * 10 8 7 37 37 H 0.97007 * 120.00460 * 0.02562 * 11 10 8 38 38 H 1.08012 * 119.95181 * 359.97438 * 15 14 12 39 39 H 1.07995 * 119.66860 * 179.73750 * 16 15 14 40 40 H 1.07998 * 119.71398 * 180.02562 * 17 16 15 41 41 H 1.07997 * 120.06228 * 180.02562 * 18 17 16 42 42 H 0.96997 * 120.00318 * 354.10895 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.1982 1.1933 0.0000 4 6 3.5822 1.1954 0.0005 5 6 4.2833 0.0019 0.0005 6 6 3.6066 -1.1993 0.0059 7 6 2.2080 -1.2099 0.0005 8 6 1.4779 -2.4878 0.0005 9 8 0.2697 -2.4956 0.1017 10 6 2.2322 -3.7864 -0.1255 11 7 1.2863 -4.9047 -0.1003 12 6 1.7371 -6.1710 -0.1987 13 8 2.9292 -6.3852 -0.3080 14 6 0.7852 -7.2966 -0.1729 15 6 -0.5636 -7.0695 0.0863 16 6 -1.4517 -8.1284 0.1154 17 6 -1.0151 -9.4254 -0.1180 18 6 0.3109 -9.6806 -0.3822 19 6 1.2354 -8.6204 -0.4175 20 6 2.5952 -8.8710 -0.6877 21 1 3.1782 -8.1486 -1.2396 22 6 3.1920 -10.0588 -0.2396 23 7 2.6566 -10.7270 0.7468 24 14 4.7524 -10.6848 -1.0537 25 1 5.1782 -11.9490 -0.4012 26 1 4.4930 -10.9349 -2.4943 27 1 5.8261 -9.6686 -0.9132 28 1 -0.3634 -0.0929 1.0234 29 1 -0.3634 0.9328 -0.4313 30 1 -0.3634 -0.8400 -0.5922 31 1 1.6582 2.1286 -0.0004 32 1 4.1179 2.1331 0.0001 33 1 5.3633 0.0117 0.0005 34 1 4.1551 -2.1297 0.0105 35 1 2.9312 -3.8825 0.7053 36 1 2.7822 -3.7973 -1.0663 37 1 0.3354 -4.7340 -0.0128 38 1 -0.9159 -6.0651 0.2698 39 1 -2.4958 -7.9448 0.3213 40 1 -1.7224 -10.2411 -0.0919 41 1 0.6414 -10.6928 -0.5629 42 1 1.8970 -10.3599 1.2255 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001363089486.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:08:47 Heat of formation + Delta-G solvation = -31.381438 kcal Electronic energy + Delta-G solvation = -25746.128925 eV Core-core repulsion = 22041.556699 eV Total energy + Delta-G solvation = -3704.572226 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 323.131 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -40.58369 -39.05596 -38.29629 -36.90384 -34.23789 -33.66868 -32.86331 -31.93328 -30.18872 -29.42487 -28.06061 -26.78695 -25.12958 -23.87968 -22.39700 -21.58004 -20.92507 -20.09769 -19.52384 -18.10908 -17.17830 -16.60797 -15.91061 -15.81170 -15.55533 -15.19577 -14.74975 -14.39118 -14.23287 -14.20565 -13.98579 -13.65263 -13.42870 -13.32666 -13.22321 -12.62446 -12.41605 -12.31694 -12.17038 -12.12421 -12.02835 -11.70330 -11.35690 -11.14742 -10.91330 -10.74306 -10.37275 -10.15569 -9.69913 -9.58886 -9.29341 -9.05350 -9.02615 -8.59766 -8.49749 -7.77814 -7.61250 -7.15798 -4.45624 0.39988 1.05458 2.17309 2.24473 2.75241 3.20000 3.30848 3.40378 3.47231 3.52122 4.02757 4.04920 4.08536 4.45759 4.54910 4.62499 4.68949 4.86703 5.01068 5.18944 5.37185 5.41901 5.47817 5.51420 5.54012 5.57067 5.65225 5.91777 5.93617 6.00856 6.05007 6.11808 6.18974 6.28504 6.49805 6.58604 6.73526 6.95302 7.01684 7.28657 7.33593 7.51319 7.59997 7.74069 7.88538 8.08944 8.21177 8.33760 8.73277 8.84761 9.29225 10.03200 Molecular weight = 323.13amu Principal moments of inertia in cm(-1) A = 0.016163 B = 0.003021 C = 0.002576 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1731.964523 B = 9264.820012 C =10865.908082 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C -0.022 4.022 3 C -0.139 4.139 4 C -0.085 4.085 5 C -0.140 4.140 6 C -0.065 4.065 7 C -0.171 4.171 8 C 0.391 3.609 9 O -0.444 6.444 10 C 0.081 3.919 11 N -0.744 5.744 12 C 0.566 3.434 13 O -0.538 6.538 14 C -0.266 4.266 15 C -0.042 4.042 16 C -0.259 4.259 17 C -0.075 4.075 18 C -0.201 4.201 19 C 0.122 3.878 20 C -0.467 4.467 21 H 0.103 0.897 22 C 0.033 3.967 23 N -0.791 5.791 24 Si 1.069 2.931 25 H -0.275 1.275 26 H -0.274 1.274 27 H -0.273 1.273 28 H 0.077 0.923 29 H 0.060 0.940 30 H 0.094 0.906 31 H 0.127 0.873 32 H 0.126 0.874 33 H 0.130 0.870 34 H 0.137 0.863 35 H 0.097 0.903 36 H 0.097 0.903 37 H 0.401 0.599 38 H 0.093 0.907 39 H 0.093 0.907 40 H 0.093 0.907 41 H 0.106 0.894 42 H 0.298 0.702 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.954 19.349 -1.084 19.403 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C -0.023 4.023 3 C -0.157 4.157 4 C -0.103 4.103 5 C -0.158 4.158 6 C -0.084 4.084 7 C -0.172 4.172 8 C 0.269 3.731 9 O -0.319 6.319 10 C -0.044 4.044 11 N -0.402 5.402 12 C 0.361 3.639 13 O -0.416 6.416 14 C -0.271 4.271 15 C -0.061 4.061 16 C -0.279 4.279 17 C -0.094 4.094 18 C -0.220 4.220 19 C 0.117 3.883 20 C -0.494 4.494 21 H 0.121 0.879 22 C -0.189 4.189 23 N -0.413 5.413 24 Si 0.892 3.108 25 H -0.199 1.199 26 H -0.200 1.200 27 H -0.198 1.198 28 H 0.095 0.905 29 H 0.079 0.921 30 H 0.113 0.887 31 H 0.145 0.855 32 H 0.144 0.856 33 H 0.148 0.852 34 H 0.155 0.845 35 H 0.115 0.885 36 H 0.115 0.885 37 H 0.238 0.762 38 H 0.111 0.889 39 H 0.112 0.888 40 H 0.111 0.889 41 H 0.124 0.876 42 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges 2.251 17.891 -1.061 18.063 hybrid contribution -1.559 1.549 0.191 2.206 sum 0.693 19.440 -0.870 19.472 Atomic orbital electron populations 1.21153 0.90161 1.03395 1.03593 1.20249 0.96789 0.91848 0.93393 1.21070 0.94341 0.97522 1.02786 1.21420 0.94250 0.98410 0.96180 1.21146 1.00413 0.92181 1.02083 1.21567 0.92863 0.99186 0.94735 1.20243 0.94389 0.94028 1.08531 1.22629 0.88942 0.90069 0.71417 1.90453 1.16117 1.89052 1.36315 1.21356 0.93712 0.85110 1.04229 1.45872 1.10297 1.04977 1.79030 1.18391 0.88622 0.81525 0.75403 1.90681 1.16853 1.84086 1.49976 1.19324 0.92552 0.93751 1.21458 1.20767 0.92798 0.96763 0.95744 1.20253 0.97839 0.93059 1.16714 1.20751 0.95357 0.95595 0.97654 1.21233 0.92658 0.98765 1.09359 1.17483 0.93714 0.89526 0.87530 1.21105 0.95556 1.04302 1.28399 0.87895 1.27254 1.04027 0.92610 0.95044 1.70373 1.19717 1.38173 1.13083 0.83578 0.73914 0.76867 0.76398 1.19938 1.19957 1.19789 0.90469 0.92139 0.88714 0.85471 0.85589 0.85244 0.84531 0.88506 0.88498 0.76166 0.88935 0.88840 0.88852 0.87560 0.88826 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.28 8.80 36.00 0.32 -0.96 16 2 C -0.02 -0.24 5.92 -104.15 -0.62 -0.85 16 3 C -0.14 -1.19 9.67 -39.64 -0.38 -1.57 16 4 C -0.08 -0.64 10.04 -39.46 -0.40 -1.04 16 5 C -0.14 -1.14 10.03 -39.65 -0.40 -1.54 16 6 C -0.07 -0.63 9.47 -39.11 -0.37 -1.00 16 7 C -0.17 -1.95 5.87 -105.06 -0.62 -2.56 16 8 C 0.39 5.21 7.12 -30.68 -0.22 4.99 16 9 O -0.44 -6.63 12.62 5.58 0.07 -6.56 16 10 C 0.08 1.20 4.85 -5.20 -0.03 1.18 16 11 N -0.74 -13.81 5.48 -62.57 -0.34 -14.15 16 12 C 0.57 13.22 7.71 -12.52 -0.10 13.12 16 13 O -0.54 -13.94 13.62 5.27 0.07 -13.87 16 14 C -0.27 -6.57 5.92 -104.37 -0.62 -7.19 16 15 C -0.04 -0.92 9.51 -39.22 -0.37 -1.29 16 16 C -0.26 -5.58 10.03 -39.37 -0.39 -5.97 16 17 C -0.07 -1.67 10.01 -39.60 -0.40 -2.07 16 18 C -0.20 -5.04 7.95 -38.88 -0.31 -5.35 16 19 C 0.12 3.26 5.15 -106.54 -0.55 2.71 16 20 C -0.47 -12.79 7.60 -37.81 -0.29 -13.08 16 21 H 0.10 2.92 6.03 -52.49 -0.32 2.61 16 22 C 0.03 0.85 4.99 -17.30 -0.09 0.76 16 23 N -0.79 -21.16 12.57 55.56 0.70 -20.46 16 24 Si 1.07 22.32 29.99 -169.99 -5.10 17.22 16 25 H -0.27 -5.60 7.11 56.52 0.40 -5.20 16 26 H -0.27 -5.45 7.11 56.52 0.40 -5.05 16 27 H -0.27 -5.56 7.11 56.52 0.40 -5.16 16 28 H 0.08 0.78 8.14 -51.93 -0.42 0.36 16 29 H 0.06 0.48 8.05 -51.93 -0.42 0.06 16 30 H 0.09 1.12 5.74 -51.92 -0.30 0.82 16 31 H 0.13 0.81 8.06 -52.49 -0.42 0.39 16 32 H 0.13 0.63 8.06 -52.49 -0.42 0.21 16 33 H 0.13 0.77 8.06 -52.49 -0.42 0.35 16 34 H 0.14 1.16 6.99 -52.49 -0.37 0.80 16 35 H 0.10 1.38 7.91 -51.93 -0.41 0.97 16 36 H 0.10 1.38 8.14 -51.93 -0.42 0.95 16 37 H 0.40 7.07 5.51 -40.82 -0.22 6.84 16 38 H 0.09 1.75 6.45 -52.48 -0.34 1.42 16 39 H 0.09 1.75 8.06 -52.49 -0.42 1.33 16 40 H 0.09 1.83 8.06 -52.49 -0.42 1.40 16 41 H 0.11 2.70 7.01 -52.49 -0.37 2.34 16 42 H 0.30 8.20 6.75 -40.82 -0.28 7.92 16 LS Contribution 353.25 15.07 5.32 5.32 Total: -1.00 -31.01 353.25 -9.87 -40.87 By element: Atomic # 1 Polarization: 18.12 SS G_CDS: -4.77 Total: 13.35 kcal Atomic # 6 Polarization: -15.90 SS G_CDS: -5.82 Total: -21.72 kcal Atomic # 7 Polarization: -34.97 SS G_CDS: 0.36 Total: -34.61 kcal Atomic # 8 Polarization: -20.58 SS G_CDS: 0.14 Total: -20.44 kcal Atomic # 14 Polarization: 22.32 SS G_CDS: -5.10 Total: 17.22 kcal Total LS contribution 5.32 Total: 5.32 kcal Total: -31.01 -9.87 -40.87 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001363089486.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.490 kcal (2) G-P(sol) polarization free energy of solvation -31.005 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.516 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.866 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.871 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.381 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds