Wall clock time and date at job start Tue Mar 31 2020 14:08:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50692 * 1 3 3 C 1.37911 * 120.08509 * 2 1 4 4 C 1.38392 * 120.16990 * 179.97438 * 3 2 1 5 5 C 1.38419 * 120.34821 * 0.02562 * 4 3 2 6 6 C 1.37871 * 120.17358 * 359.71854 * 5 4 3 7 7 C 1.39835 * 120.08993 * 179.97438 * 2 1 3 8 8 C 1.47169 * 120.17026 * 0.02811 * 7 2 1 9 9 O 1.21249 * 119.99683 * 354.43861 * 8 7 2 10 10 C 1.50700 * 119.99684 * 174.43691 * 8 7 2 11 11 N 1.46497 * 109.46753 * 180.02562 * 10 8 7 12 12 C 1.34773 * 120.00045 * 180.02562 * 11 10 8 13 13 O 1.21606 * 120.00033 * 0.02562 * 12 11 10 14 14 C 1.47436 * 120.00121 * 179.97438 * 12 11 10 15 15 C 1.39219 * 120.28499 * 353.57297 * 14 12 11 16 16 C 1.38222 * 120.09651 * 180.28089 * 15 14 12 17 17 C 1.38827 * 120.67162 * 359.71028 * 16 15 14 18 18 C 1.37595 * 120.57255 * 0.02562 * 17 16 15 19 19 C 1.40715 * 119.88319 * 359.97438 * 18 17 16 20 20 C 1.40880 * 120.32981 * 180.02562 * 19 18 17 21 21 H 1.08000 * 120.00455 * 145.90106 * 20 19 18 22 22 C 1.40282 * 120.00048 * 325.89657 * 20 19 18 23 23 N 1.30624 * 119.99662 * 338.83643 * 22 20 19 24 24 Si 1.86794 * 119.99802 * 158.83671 * 22 20 19 25 25 H 1.48503 * 109.47032 * 180.02562 * 24 22 20 26 26 H 1.48501 * 109.47207 * 299.99723 * 24 22 20 27 27 H 1.48501 * 109.47575 * 59.99842 * 24 22 20 28 28 H 1.08998 * 109.47561 * 264.81160 * 1 2 3 29 29 H 1.09004 * 109.47252 * 24.81552 * 1 2 3 30 30 H 1.09008 * 109.47117 * 144.81406 * 1 2 3 31 31 H 1.08000 * 119.91414 * 359.97438 * 3 2 1 32 32 H 1.07998 * 119.82298 * 179.97438 * 4 3 2 33 33 H 1.08000 * 119.91324 * 179.97438 * 5 4 3 34 34 H 1.07999 * 120.08892 * 180.28275 * 6 5 4 35 35 H 1.09000 * 109.46815 * 60.00300 * 10 8 7 36 36 H 1.08993 * 109.47273 * 299.99983 * 10 8 7 37 37 H 0.97007 * 120.00460 * 0.02562 * 11 10 8 38 38 H 1.08012 * 119.95181 * 359.97438 * 15 14 12 39 39 H 1.07995 * 119.66860 * 179.73750 * 16 15 14 40 40 H 1.07998 * 119.71398 * 180.02562 * 17 16 15 41 41 H 1.07997 * 120.06228 * 180.02562 * 18 17 16 42 42 H 0.96997 * 120.00318 * 354.10895 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.1982 1.1933 0.0000 4 6 3.5822 1.1954 0.0005 5 6 4.2833 0.0019 0.0005 6 6 3.6066 -1.1993 0.0059 7 6 2.2080 -1.2099 0.0005 8 6 1.4779 -2.4878 0.0005 9 8 0.2697 -2.4956 0.1017 10 6 2.2322 -3.7864 -0.1255 11 7 1.2863 -4.9047 -0.1003 12 6 1.7371 -6.1710 -0.1987 13 8 2.9292 -6.3852 -0.3080 14 6 0.7852 -7.2966 -0.1729 15 6 -0.5636 -7.0695 0.0863 16 6 -1.4517 -8.1284 0.1154 17 6 -1.0151 -9.4254 -0.1180 18 6 0.3109 -9.6806 -0.3822 19 6 1.2354 -8.6204 -0.4175 20 6 2.5952 -8.8710 -0.6877 21 1 3.1782 -8.1486 -1.2396 22 6 3.1920 -10.0588 -0.2396 23 7 2.6566 -10.7270 0.7468 24 14 4.7524 -10.6848 -1.0537 25 1 5.1782 -11.9490 -0.4012 26 1 4.4930 -10.9349 -2.4943 27 1 5.8261 -9.6686 -0.9132 28 1 -0.3634 -0.0929 1.0234 29 1 -0.3634 0.9328 -0.4313 30 1 -0.3634 -0.8400 -0.5922 31 1 1.6582 2.1286 -0.0004 32 1 4.1179 2.1331 0.0001 33 1 5.3633 0.0117 0.0005 34 1 4.1551 -2.1297 0.0105 35 1 2.9312 -3.8825 0.7053 36 1 2.7822 -3.7973 -1.0663 37 1 0.3354 -4.7340 -0.0128 38 1 -0.9159 -6.0651 0.2698 39 1 -2.4958 -7.9448 0.3213 40 1 -1.7224 -10.2411 -0.0919 41 1 0.6414 -10.6928 -0.5629 42 1 1.8970 -10.3599 1.2255 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001363089486.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:08:46 Heat of formation + Delta-G solvation = -48.218445 kcal Electronic energy + Delta-G solvation = -25746.859032 eV Core-core repulsion = 22041.556699 eV Total energy + Delta-G solvation = -3705.302334 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 323.131 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -41.60954 -40.66139 -39.32788 -38.68592 -36.02132 -35.31359 -33.65001 -32.84463 -31.91060 -31.27456 -29.21009 -27.78509 -26.95099 -24.83864 -23.96741 -22.86165 -22.34324 -21.37851 -20.97683 -19.93705 -18.54834 -17.72617 -17.14580 -16.87737 -16.66691 -16.47307 -16.36906 -15.95982 -15.72163 -15.57249 -15.34872 -15.04409 -14.60775 -14.50611 -14.33241 -14.08583 -13.90842 -13.79493 -13.46957 -13.06656 -13.00307 -12.94140 -12.70707 -12.70164 -12.51301 -12.02689 -12.01668 -11.95491 -11.50211 -10.94509 -10.67444 -10.44612 -10.17650 -9.97848 -9.72682 -9.63903 -9.53192 -9.12842 -6.46793 -0.41858 0.36911 0.37845 0.89000 1.26090 1.48328 1.63232 1.78534 2.15677 2.19423 2.31982 2.71784 2.76046 2.86965 3.53641 3.72682 3.84478 4.03091 4.12002 4.15867 4.22322 4.27013 4.34973 4.37483 4.43879 4.49936 4.72415 4.75742 4.75944 4.79402 4.86102 4.99639 5.11835 5.21348 5.34069 5.39212 5.40481 5.48084 5.56231 5.62991 5.68854 5.86259 5.93430 5.93933 6.17313 6.29322 6.30992 6.60358 6.81226 6.88012 7.49457 8.02257 Molecular weight = 323.13amu Principal moments of inertia in cm(-1) A = 0.016163 B = 0.003021 C = 0.002576 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1731.964523 B = 9264.820012 C =10865.908082 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 C -0.038 4.038 3 C -0.141 4.141 4 C -0.076 4.076 5 C -0.142 4.142 6 C -0.074 4.074 7 C -0.192 4.192 8 C 0.400 3.600 9 O -0.465 6.465 10 C 0.076 3.924 11 N -0.729 5.729 12 C 0.562 3.438 13 O -0.571 6.571 14 C -0.286 4.286 15 C -0.044 4.044 16 C -0.247 4.247 17 C -0.070 4.070 18 C -0.224 4.224 19 C 0.097 3.903 20 C -0.507 4.507 21 H 0.082 0.918 22 C -0.001 4.001 23 N -0.812 5.812 24 Si 1.116 2.884 25 H -0.265 1.265 26 H -0.259 1.259 27 H -0.268 1.268 28 H 0.072 0.928 29 H 0.081 0.919 30 H 0.073 0.927 31 H 0.151 0.849 32 H 0.159 0.841 33 H 0.154 0.846 34 H 0.141 0.859 35 H 0.103 0.897 36 H 0.103 0.897 37 H 0.407 0.593 38 H 0.125 0.875 39 H 0.134 0.866 40 H 0.126 0.874 41 H 0.092 0.908 42 H 0.282 0.718 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.499 21.944 -1.152 21.980 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C -0.038 4.038 3 C -0.159 4.159 4 C -0.094 4.094 5 C -0.160 4.160 6 C -0.092 4.092 7 C -0.194 4.194 8 C 0.280 3.720 9 O -0.343 6.343 10 C -0.048 4.048 11 N -0.386 5.386 12 C 0.356 3.644 13 O -0.452 6.452 14 C -0.290 4.290 15 C -0.062 4.062 16 C -0.265 4.265 17 C -0.089 4.089 18 C -0.243 4.243 19 C 0.093 3.907 20 C -0.535 4.535 21 H 0.100 0.900 22 C -0.217 4.217 23 N -0.436 5.436 24 Si 0.933 3.067 25 H -0.190 1.190 26 H -0.184 1.184 27 H -0.193 1.193 28 H 0.091 0.909 29 H 0.100 0.900 30 H 0.092 0.908 31 H 0.169 0.831 32 H 0.176 0.824 33 H 0.171 0.829 34 H 0.158 0.842 35 H 0.121 0.879 36 H 0.121 0.879 37 H 0.245 0.755 38 H 0.143 0.857 39 H 0.152 0.848 40 H 0.144 0.856 41 H 0.110 0.890 42 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges 1.759 20.528 -1.126 20.634 hybrid contribution -1.592 0.993 0.239 1.892 sum 0.167 21.521 -0.887 21.540 Atomic orbital electron populations 1.21093 0.90271 1.03598 1.03046 1.20426 0.97017 0.92350 0.94001 1.21383 0.95020 0.97588 1.01911 1.21854 0.94061 0.99555 0.93921 1.21496 1.01752 0.91719 1.01018 1.21731 0.92288 1.00370 0.94859 1.20124 0.95079 0.93142 1.11033 1.22576 0.88578 0.90138 0.70722 1.90450 1.16801 1.89224 1.37809 1.21589 0.93429 0.84848 1.04909 1.45652 1.11215 1.04494 1.77214 1.18359 0.87986 0.82773 0.75318 1.90657 1.18067 1.84882 1.51588 1.19734 0.94329 0.93775 1.21203 1.21123 0.91659 0.98776 0.94685 1.20781 0.99688 0.92236 1.13839 1.21154 0.94686 0.97330 0.95720 1.21214 0.93900 0.97880 1.11319 1.17874 0.94108 0.91026 0.87655 1.21061 0.96230 1.05247 1.30960 0.90003 1.28514 1.06192 0.92411 0.94546 1.70489 1.20196 1.38676 1.14216 0.83027 0.70632 0.76695 0.76350 1.18958 1.18372 1.19293 0.90942 0.89994 0.90837 0.83091 0.82359 0.82861 0.84158 0.87899 0.87890 0.75489 0.85734 0.84824 0.85584 0.88992 0.90602 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.38 8.80 71.23 0.63 -1.75 16 2 C -0.04 -0.74 5.92 -19.56 -0.12 -0.85 16 3 C -0.14 -1.99 9.67 22.23 0.21 -1.78 16 4 C -0.08 -0.88 10.04 22.35 0.22 -0.66 16 5 C -0.14 -1.92 10.03 22.23 0.22 -1.69 16 6 C -0.07 -1.34 9.47 22.58 0.21 -1.13 16 7 C -0.19 -4.25 5.87 -20.15 -0.12 -4.37 16 8 C 0.40 10.63 7.12 28.03 0.20 10.83 16 9 O -0.47 -13.92 12.62 -2.93 -0.04 -13.95 16 10 C 0.08 2.29 4.85 85.63 0.41 2.70 16 11 N -0.73 -27.21 5.48 -470.11 -2.57 -29.78 16 12 C 0.56 26.92 7.71 86.67 0.67 27.58 16 13 O -0.57 -30.89 13.62 -4.05 -0.06 -30.95 16 14 C -0.29 -14.33 5.92 -19.70 -0.12 -14.45 16 15 C -0.04 -1.85 9.51 22.50 0.21 -1.64 16 16 C -0.25 -9.90 10.03 22.41 0.22 -9.67 16 17 C -0.07 -3.05 10.01 22.26 0.22 -2.83 16 18 C -0.22 -11.49 7.95 22.72 0.18 -11.31 16 19 C 0.10 5.40 5.15 -21.11 -0.11 5.29 16 20 C -0.51 -29.29 7.60 23.41 0.18 -29.11 16 21 H 0.08 4.95 6.03 -2.91 -0.02 4.93 16 22 C 0.00 -0.04 4.99 85.37 0.43 0.38 16 23 N -0.81 -45.42 12.57 21.88 0.28 -45.14 16 24 Si 1.12 46.46 29.99 68.60 2.06 48.51 16 25 H -0.27 -10.51 7.11 99.48 0.71 -9.81 16 26 H -0.26 -10.04 7.11 99.48 0.71 -9.33 16 27 H -0.27 -10.81 7.11 99.48 0.71 -10.11 16 28 H 0.07 1.42 8.14 -2.39 -0.02 1.40 16 29 H 0.08 1.15 8.05 -2.38 -0.02 1.13 16 30 H 0.07 1.74 5.74 -2.38 -0.01 1.72 16 31 H 0.15 1.35 8.06 -2.91 -0.02 1.33 16 32 H 0.16 0.82 8.06 -2.91 -0.02 0.80 16 33 H 0.15 1.30 8.06 -2.91 -0.02 1.27 16 34 H 0.14 2.31 6.99 -2.91 -0.02 2.29 16 35 H 0.10 2.98 7.91 -2.39 -0.02 2.96 16 36 H 0.10 2.98 8.14 -2.39 -0.02 2.96 16 37 H 0.41 14.11 5.51 -92.70 -0.51 13.60 16 38 H 0.12 4.40 6.45 -2.90 -0.02 4.38 16 39 H 0.13 4.35 8.06 -2.91 -0.02 4.32 16 40 H 0.13 4.58 8.06 -2.91 -0.02 4.56 16 41 H 0.09 4.89 7.01 -2.91 -0.02 4.87 16 42 H 0.28 16.33 6.75 -92.71 -0.63 15.71 16 Total: -1.00 -70.91 353.25 4.14 -66.77 By element: Atomic # 1 Polarization: 38.28 SS G_CDS: 0.70 Total: 38.98 kcal Atomic # 6 Polarization: -38.21 SS G_CDS: 3.77 Total: -34.44 kcal Atomic # 7 Polarization: -72.62 SS G_CDS: -2.30 Total: -74.92 kcal Atomic # 8 Polarization: -44.81 SS G_CDS: -0.09 Total: -44.90 kcal Atomic # 14 Polarization: 46.46 SS G_CDS: 2.06 Total: 48.51 kcal Total: -70.91 4.14 -66.77 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001363089486.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.549 kcal (2) G-P(sol) polarization free energy of solvation -70.905 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.357 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.138 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.767 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.218 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds