Wall clock time and date at job start Tue Mar 31 2020 14:08:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.37907 * 120.08724 * 2 1 4 4 C 1.38389 * 120.16906 * 179.97438 * 3 2 1 5 5 C 1.38423 * 120.35315 * 0.02562 * 4 3 2 6 6 C 1.37871 * 120.16632 * 359.69638 * 5 4 3 7 7 C 1.39836 * 120.08850 * 179.97438 * 2 1 3 8 8 C 1.47168 * 120.16825 * 359.97438 * 7 2 1 9 9 O 1.21257 * 120.00047 * 354.40803 * 8 7 2 10 10 C 1.50703 * 119.99776 * 174.40256 * 8 7 2 11 11 N 1.46499 * 109.47005 * 179.97438 * 10 8 7 12 12 C 1.34780 * 120.00106 * 180.02562 * 11 10 8 13 13 O 1.21590 * 119.99591 * 359.97438 * 12 11 10 14 14 C 1.47643 * 120.00146 * 179.72591 * 12 11 10 15 15 C 1.40005 * 119.89236 * 0.02562 * 14 12 11 16 16 C 1.36324 * 120.10396 * 179.75643 * 15 14 12 17 17 C 1.40881 * 119.88824 * 0.53732 * 16 15 14 18 18 C 1.41114 * 120.10242 * 179.69335 * 17 16 15 19 19 H 1.08000 * 120.00078 * 154.79579 * 18 17 16 20 20 C 1.40230 * 119.99672 * 334.79391 * 18 17 16 21 21 N 1.30643 * 120.00432 * 342.66338 * 20 18 17 22 22 Si 1.86805 * 119.99504 * 162.66276 * 20 18 17 23 23 H 1.48502 * 109.47271 * 94.82570 * 22 20 18 24 24 H 1.48503 * 109.46926 * 214.82268 * 22 20 18 25 25 H 1.48500 * 109.47279 * 334.82487 * 22 20 18 26 26 C 1.40882 * 119.79770 * 359.71595 * 17 16 15 27 27 C 1.36313 * 119.89058 * 0.02562 * 26 17 16 28 28 H 1.09008 * 109.47008 * 263.23530 * 1 2 3 29 29 H 1.09007 * 109.47052 * 23.23078 * 1 2 3 30 30 H 1.08995 * 109.47349 * 143.23552 * 1 2 3 31 31 H 1.07992 * 119.91825 * 359.97438 * 3 2 1 32 32 H 1.08007 * 119.82058 * 179.97438 * 4 3 2 33 33 H 1.07999 * 119.91731 * 179.97438 * 5 4 3 34 34 H 1.08007 * 120.08497 * 180.28221 * 6 5 4 35 35 H 1.09007 * 109.46973 * 60.00572 * 10 8 7 36 36 H 1.08994 * 109.47211 * 300.00554 * 10 8 7 37 37 H 0.96997 * 119.99937 * 0.02562 * 11 10 8 38 38 H 1.08001 * 119.95372 * 359.97438 * 15 14 12 39 39 H 1.07998 * 120.05505 * 180.23522 * 16 15 14 40 40 H 0.96998 * 119.99883 * 179.97438 * 21 20 18 41 41 H 1.08002 * 120.06031 * 179.97438 * 26 17 16 42 42 H 1.08003 * 119.95114 * 179.97438 * 27 26 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1983 1.1933 0.0000 4 6 3.5822 1.1952 0.0005 5 6 4.2834 0.0017 0.0005 6 6 3.6067 -1.1994 0.0063 7 6 2.2080 -1.2099 0.0005 8 6 1.4779 -2.4877 0.0017 9 8 0.2697 -2.4956 0.1045 10 6 2.2319 -3.7864 -0.1250 11 7 1.2861 -4.9049 -0.0972 12 6 1.7368 -6.1712 -0.1958 13 8 2.9284 -6.3853 -0.3084 14 6 0.7842 -7.2987 -0.1617 15 6 -0.5870 -7.0498 -0.0273 16 6 -1.4709 -8.0873 -0.0003 17 6 -1.0015 -9.4121 -0.0964 18 6 -1.9118 -10.4898 -0.0624 19 1 -1.6522 -11.4308 -0.5244 20 6 -3.1536 -10.3388 0.5713 21 7 -3.3444 -9.3542 1.4086 22 14 -4.5351 -11.5456 0.2183 23 1 -4.5339 -12.6148 1.2489 24 1 -5.8365 -10.8308 0.2483 25 1 -4.3334 -12.1505 -1.1228 26 6 0.3797 -9.6578 -0.2261 27 6 1.2554 -8.6136 -0.2575 28 1 -0.3633 -0.1211 1.0206 29 1 -0.3633 0.9444 -0.4054 30 1 -0.3634 -0.8232 -0.6150 31 1 1.6585 2.1285 -0.0004 32 1 4.1180 2.1331 0.0001 33 1 5.3634 0.0115 0.0005 34 1 4.1551 -2.1299 0.0109 35 1 2.9321 -3.8825 0.7049 36 1 2.7807 -3.7975 -1.0666 37 1 0.3355 -4.7340 -0.0078 38 1 -0.9455 -6.0340 0.0515 39 1 -2.5288 -7.8942 0.0996 40 1 -4.2035 -9.2496 1.8466 41 1 0.7442 -10.6717 -0.2997 42 1 2.3145 -8.8009 -0.3565 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001363191233.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:08:50 Heat of formation + Delta-G solvation = -34.331779 kcal Electronic energy + Delta-G solvation = -25125.993162 eV Core-core repulsion = 21421.293000 eV Total energy + Delta-G solvation = -3704.700163 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 323.131 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -40.62172 -39.11194 -38.30143 -37.05681 -34.13129 -33.85956 -32.91325 -31.98415 -30.33970 -29.43573 -28.27931 -26.98773 -25.58264 -23.87118 -22.13599 -21.48934 -20.93218 -20.12888 -19.62764 -17.53620 -17.41909 -16.78326 -15.95917 -15.86892 -15.63078 -15.51918 -15.17604 -14.38934 -14.29793 -14.21283 -13.96108 -13.47743 -13.40711 -13.28650 -13.15908 -12.68378 -12.49118 -12.33442 -12.19169 -12.07273 -12.04211 -11.89303 -11.38847 -11.36793 -11.24785 -10.96799 -10.63129 -10.05660 -9.70925 -9.54684 -9.34092 -9.32460 -9.05237 -9.03478 -8.71066 -7.70506 -7.53301 -7.02175 -4.59417 0.37109 1.02634 2.14046 2.22890 2.91142 2.95639 3.01768 3.05377 3.42883 3.45406 3.74673 3.85385 3.99809 4.42700 4.52200 4.56870 4.65579 4.82954 4.98631 5.15443 5.34730 5.38300 5.39053 5.49062 5.56134 5.59253 5.62446 5.91221 5.98530 6.04877 6.08750 6.10433 6.26318 6.32538 6.55718 6.77885 6.82858 6.83901 7.04680 7.14368 7.29546 7.44895 7.65684 7.80084 7.87390 8.08087 8.20662 8.41299 8.64043 8.76367 9.01792 9.89880 Molecular weight = 323.13amu Principal moments of inertia in cm(-1) A = 0.022968 B = 0.002313 C = 0.002118 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1218.777025 B =12100.834962 C =13217.810233 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C -0.021 4.021 3 C -0.139 4.139 4 C -0.084 4.084 5 C -0.141 4.141 6 C -0.066 4.066 7 C -0.170 4.170 8 C 0.389 3.611 9 O -0.440 6.440 10 C 0.080 3.920 11 N -0.737 5.737 12 C 0.574 3.426 13 O -0.577 6.577 14 C -0.285 4.285 15 C -0.061 4.061 16 C -0.178 4.178 17 C 0.129 3.871 18 C -0.442 4.442 19 H 0.085 0.915 20 C 0.074 3.926 21 N -0.771 5.771 22 Si 0.913 3.087 23 H -0.267 1.267 24 H -0.273 1.273 25 H -0.257 1.257 26 C -0.239 4.239 27 C -0.021 4.021 28 H 0.078 0.922 29 H 0.060 0.940 30 H 0.093 0.907 31 H 0.128 0.872 32 H 0.126 0.874 33 H 0.129 0.871 34 H 0.136 0.864 35 H 0.098 0.902 36 H 0.098 0.902 37 H 0.407 0.593 38 H 0.090 0.910 39 H 0.120 0.880 40 H 0.287 0.713 41 H 0.098 0.902 42 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.827 18.405 -1.492 19.687 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C -0.022 4.022 3 C -0.156 4.156 4 C -0.102 4.102 5 C -0.159 4.159 6 C -0.084 4.084 7 C -0.172 4.172 8 C 0.267 3.733 9 O -0.315 6.315 10 C -0.045 4.045 11 N -0.393 5.393 12 C 0.370 3.630 13 O -0.459 6.459 14 C -0.289 4.289 15 C -0.081 4.081 16 C -0.197 4.197 17 C 0.126 3.874 18 C -0.469 4.469 19 H 0.103 0.897 20 C -0.148 4.148 21 N -0.394 5.394 22 Si 0.736 3.264 23 H -0.192 1.192 24 H -0.197 1.197 25 H -0.181 1.181 26 C -0.258 4.258 27 C -0.040 4.040 28 H 0.096 0.904 29 H 0.079 0.921 30 H 0.112 0.888 31 H 0.146 0.854 32 H 0.144 0.856 33 H 0.147 0.853 34 H 0.154 0.846 35 H 0.116 0.884 36 H 0.116 0.884 37 H 0.245 0.755 38 H 0.108 0.892 39 H 0.138 0.862 40 H 0.098 0.902 41 H 0.117 0.883 42 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges 6.836 18.359 -1.341 19.636 hybrid contribution -0.902 -0.220 0.095 0.933 sum 5.934 18.139 -1.246 19.125 Atomic orbital electron populations 1.21134 0.90070 1.03236 1.03750 1.20260 0.96834 0.91835 0.93248 1.21078 0.94339 0.97550 1.02681 1.21424 0.94255 0.98415 0.96147 1.21137 1.00374 0.92191 1.02156 1.21541 0.92837 0.99123 0.94947 1.20229 0.94363 0.94001 1.08572 1.22595 0.88989 0.90000 0.71701 1.90491 1.16036 1.89027 1.35946 1.21398 0.93670 0.85216 1.04262 1.45752 1.10807 1.04909 1.77867 1.18598 0.88224 0.82067 0.74121 1.90628 1.17307 1.85165 1.52801 1.18833 0.92508 0.92020 1.25545 1.20518 0.92387 0.97365 0.97781 1.20980 0.99175 0.91905 1.07641 1.17800 0.91307 0.92922 0.85412 1.19847 0.98411 0.99282 1.29387 0.89694 1.26111 0.99851 0.96100 0.92707 1.69742 1.25093 1.27439 1.17152 0.86209 0.79357 0.80397 0.80393 1.19246 1.19733 1.18086 1.20712 0.93257 0.96987 1.14876 1.20353 0.98022 0.91448 0.94214 0.90351 0.92103 0.88848 0.85429 0.85580 0.85273 0.84620 0.88429 0.88422 0.75493 0.89154 0.86186 0.90214 0.88337 0.88056 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.26 8.73 36.01 0.31 -0.94 16 2 C -0.02 -0.22 5.92 -104.15 -0.62 -0.84 16 3 C -0.14 -1.13 9.66 -39.65 -0.38 -1.52 16 4 C -0.08 -0.60 10.04 -39.46 -0.40 -1.00 16 5 C -0.14 -1.05 10.03 -39.65 -0.40 -1.45 16 6 C -0.07 -0.59 9.47 -39.11 -0.37 -0.96 16 7 C -0.17 -1.85 5.87 -105.07 -0.62 -2.47 16 8 C 0.39 4.98 7.12 -30.68 -0.22 4.76 16 9 O -0.44 -6.51 12.65 5.58 0.07 -6.44 16 10 C 0.08 1.10 4.85 -5.19 -0.03 1.07 16 11 N -0.74 -13.01 5.48 -62.49 -0.34 -13.35 16 12 C 0.57 12.35 7.76 -12.42 -0.10 12.26 16 13 O -0.58 -13.45 16.32 5.29 0.09 -13.36 16 14 C -0.28 -6.63 5.89 -104.73 -0.62 -7.24 16 15 C -0.06 -1.41 9.47 -39.61 -0.38 -1.78 16 16 C -0.18 -4.45 8.63 -39.27 -0.34 -4.79 16 17 C 0.13 3.32 5.57 -106.81 -0.59 2.72 16 18 C -0.44 -11.06 9.04 -37.74 -0.34 -11.41 16 19 H 0.08 2.02 7.91 -52.49 -0.42 1.61 16 20 C 0.07 1.73 5.14 -17.31 -0.09 1.64 16 21 N -0.77 -18.73 10.96 55.56 0.61 -18.12 16 22 Si 0.91 17.41 29.59 -169.99 -5.03 12.38 16 23 H -0.27 -5.04 7.11 56.52 0.40 -4.64 16 24 H -0.27 -5.08 7.11 56.52 0.40 -4.68 16 25 H -0.26 -4.88 7.11 56.52 0.40 -4.48 16 26 C -0.24 -5.82 9.73 -39.27 -0.38 -6.21 16 27 C -0.02 -0.50 9.52 -39.61 -0.38 -0.88 16 28 H 0.08 0.80 8.14 -51.92 -0.42 0.37 16 29 H 0.06 0.48 8.04 -51.93 -0.42 0.06 16 30 H 0.09 1.10 5.86 -51.93 -0.30 0.79 16 31 H 0.13 0.78 8.05 -52.49 -0.42 0.36 16 32 H 0.13 0.58 8.06 -52.48 -0.42 0.16 16 33 H 0.13 0.68 8.06 -52.49 -0.42 0.25 16 34 H 0.14 1.02 6.99 -52.48 -0.37 0.65 16 35 H 0.10 1.26 7.91 -51.92 -0.41 0.85 16 36 H 0.10 1.26 8.14 -51.93 -0.42 0.83 16 37 H 0.41 7.06 5.44 -40.82 -0.22 6.84 16 38 H 0.09 1.84 6.37 -52.49 -0.33 1.50 16 39 H 0.12 3.05 6.18 -52.49 -0.32 2.72 16 40 H 0.29 6.26 8.29 -40.82 -0.34 5.92 16 41 H 0.10 2.23 8.06 -52.49 -0.42 1.81 16 42 H 0.10 2.30 7.63 -52.48 -0.40 1.90 16 LS Contribution 357.93 15.07 5.39 5.39 Total: -1.00 -29.68 357.93 -10.00 -39.68 By element: Atomic # 1 Polarization: 17.70 SS G_CDS: -4.87 Total: 12.83 kcal Atomic # 6 Polarization: -13.10 SS G_CDS: -5.92 Total: -19.02 kcal Atomic # 7 Polarization: -31.73 SS G_CDS: 0.27 Total: -31.47 kcal Atomic # 8 Polarization: -19.96 SS G_CDS: 0.16 Total: -19.80 kcal Atomic # 14 Polarization: 17.41 SS G_CDS: -5.03 Total: 12.38 kcal Total LS contribution 5.39 Total: 5.39 kcal Total: -29.68 -10.00 -39.68 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001363191233.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.351 kcal (2) G-P(sol) polarization free energy of solvation -29.681 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.330 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.002 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.682 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.332 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds