Wall clock time and date at job start Tue Mar 31 2020 14:08:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.37907 * 120.08724 * 2 1 4 4 C 1.38389 * 120.16906 * 179.97438 * 3 2 1 5 5 C 1.38423 * 120.35315 * 0.02562 * 4 3 2 6 6 C 1.37871 * 120.16632 * 359.69638 * 5 4 3 7 7 C 1.39836 * 120.08850 * 179.97438 * 2 1 3 8 8 C 1.47168 * 120.16825 * 359.97438 * 7 2 1 9 9 O 1.21257 * 120.00047 * 354.40803 * 8 7 2 10 10 C 1.50703 * 119.99776 * 174.40256 * 8 7 2 11 11 N 1.46499 * 109.47005 * 179.97438 * 10 8 7 12 12 C 1.34780 * 120.00106 * 180.02562 * 11 10 8 13 13 O 1.21590 * 119.99591 * 359.97438 * 12 11 10 14 14 C 1.47643 * 120.00146 * 179.72591 * 12 11 10 15 15 C 1.40005 * 119.89236 * 0.02562 * 14 12 11 16 16 C 1.36324 * 120.10396 * 179.75643 * 15 14 12 17 17 C 1.40881 * 119.88824 * 0.53732 * 16 15 14 18 18 C 1.41114 * 120.10242 * 179.69335 * 17 16 15 19 19 H 1.08000 * 120.00078 * 154.79579 * 18 17 16 20 20 C 1.40230 * 119.99672 * 334.79391 * 18 17 16 21 21 N 1.30643 * 120.00432 * 342.66338 * 20 18 17 22 22 Si 1.86805 * 119.99504 * 162.66276 * 20 18 17 23 23 H 1.48502 * 109.47271 * 94.82570 * 22 20 18 24 24 H 1.48503 * 109.46926 * 214.82268 * 22 20 18 25 25 H 1.48500 * 109.47279 * 334.82487 * 22 20 18 26 26 C 1.40882 * 119.79770 * 359.71595 * 17 16 15 27 27 C 1.36313 * 119.89058 * 0.02562 * 26 17 16 28 28 H 1.09008 * 109.47008 * 263.23530 * 1 2 3 29 29 H 1.09007 * 109.47052 * 23.23078 * 1 2 3 30 30 H 1.08995 * 109.47349 * 143.23552 * 1 2 3 31 31 H 1.07992 * 119.91825 * 359.97438 * 3 2 1 32 32 H 1.08007 * 119.82058 * 179.97438 * 4 3 2 33 33 H 1.07999 * 119.91731 * 179.97438 * 5 4 3 34 34 H 1.08007 * 120.08497 * 180.28221 * 6 5 4 35 35 H 1.09007 * 109.46973 * 60.00572 * 10 8 7 36 36 H 1.08994 * 109.47211 * 300.00554 * 10 8 7 37 37 H 0.96997 * 119.99937 * 0.02562 * 11 10 8 38 38 H 1.08001 * 119.95372 * 359.97438 * 15 14 12 39 39 H 1.07998 * 120.05505 * 180.23522 * 16 15 14 40 40 H 0.96998 * 119.99883 * 179.97438 * 21 20 18 41 41 H 1.08002 * 120.06031 * 179.97438 * 26 17 16 42 42 H 1.08003 * 119.95114 * 179.97438 * 27 26 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1983 1.1933 0.0000 4 6 3.5822 1.1952 0.0005 5 6 4.2834 0.0017 0.0005 6 6 3.6067 -1.1994 0.0063 7 6 2.2080 -1.2099 0.0005 8 6 1.4779 -2.4877 0.0017 9 8 0.2697 -2.4956 0.1045 10 6 2.2319 -3.7864 -0.1250 11 7 1.2861 -4.9049 -0.0972 12 6 1.7368 -6.1712 -0.1958 13 8 2.9284 -6.3853 -0.3084 14 6 0.7842 -7.2987 -0.1617 15 6 -0.5870 -7.0498 -0.0273 16 6 -1.4709 -8.0873 -0.0003 17 6 -1.0015 -9.4121 -0.0964 18 6 -1.9118 -10.4898 -0.0624 19 1 -1.6522 -11.4308 -0.5244 20 6 -3.1536 -10.3388 0.5713 21 7 -3.3444 -9.3542 1.4086 22 14 -4.5351 -11.5456 0.2183 23 1 -4.5339 -12.6148 1.2489 24 1 -5.8365 -10.8308 0.2483 25 1 -4.3334 -12.1505 -1.1228 26 6 0.3797 -9.6578 -0.2261 27 6 1.2554 -8.6136 -0.2575 28 1 -0.3633 -0.1211 1.0206 29 1 -0.3633 0.9444 -0.4054 30 1 -0.3634 -0.8232 -0.6150 31 1 1.6585 2.1285 -0.0004 32 1 4.1180 2.1331 0.0001 33 1 5.3634 0.0115 0.0005 34 1 4.1551 -2.1299 0.0109 35 1 2.9321 -3.8825 0.7049 36 1 2.7807 -3.7975 -1.0666 37 1 0.3355 -4.7340 -0.0078 38 1 -0.9455 -6.0340 0.0515 39 1 -2.5288 -7.8942 0.0996 40 1 -4.2035 -9.2496 1.8466 41 1 0.7442 -10.6717 -0.2997 42 1 2.3145 -8.8009 -0.3565 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001363191233.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:08:49 Heat of formation + Delta-G solvation = -49.365865 kcal Electronic energy + Delta-G solvation = -25126.645089 eV Core-core repulsion = 21421.293000 eV Total energy + Delta-G solvation = -3705.352090 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 323.131 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -41.59655 -40.60757 -39.30014 -38.81770 -35.68445 -35.56710 -33.64405 -32.84818 -32.04105 -31.31990 -29.43852 -28.00318 -27.14846 -24.72079 -23.64500 -22.83897 -22.34790 -21.36890 -20.97072 -19.38064 -18.81762 -17.80913 -17.20339 -17.07043 -16.87612 -16.52597 -16.38260 -15.76714 -15.66210 -15.53513 -15.18393 -14.93660 -14.62287 -14.45925 -14.28601 -14.06378 -13.86901 -13.69384 -13.57388 -13.20831 -13.07545 -12.99997 -12.84907 -12.68447 -12.64287 -12.37299 -12.00776 -11.79759 -11.39534 -11.13749 -10.85314 -10.61781 -10.23408 -9.96553 -9.71140 -9.59647 -9.42900 -8.80486 -6.49841 -0.39565 0.39570 0.40754 1.13521 1.28559 1.37694 1.41696 1.54695 2.08154 2.14665 2.17046 2.76035 2.78282 2.86935 3.67139 3.74239 3.85515 4.05115 4.13243 4.17790 4.28326 4.29235 4.38706 4.40715 4.44467 4.51254 4.72981 4.75652 4.80309 4.91359 5.01296 5.01527 5.13682 5.22065 5.27723 5.35246 5.37255 5.49743 5.56597 5.58253 5.79523 5.91662 5.95201 5.98173 6.20568 6.32087 6.52245 6.58245 6.75381 6.86846 7.33579 8.14886 Molecular weight = 323.13amu Principal moments of inertia in cm(-1) A = 0.022968 B = 0.002313 C = 0.002118 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1218.777025 B =12100.834962 C =13217.810233 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C -0.039 4.039 3 C -0.142 4.142 4 C -0.077 4.077 5 C -0.141 4.141 6 C -0.072 4.072 7 C -0.192 4.192 8 C 0.395 3.605 9 O -0.469 6.469 10 C 0.075 3.925 11 N -0.728 5.728 12 C 0.576 3.424 13 O -0.596 6.596 14 C -0.295 4.295 15 C -0.056 4.056 16 C -0.198 4.198 17 C 0.101 3.899 18 C -0.471 4.471 19 H 0.088 0.912 20 C 0.035 3.965 21 N -0.800 5.800 22 Si 0.989 3.011 23 H -0.260 1.260 24 H -0.263 1.263 25 H -0.256 1.256 26 C -0.251 4.251 27 C -0.029 4.029 28 H 0.070 0.930 29 H 0.080 0.920 30 H 0.071 0.929 31 H 0.149 0.851 32 H 0.158 0.842 33 H 0.156 0.844 34 H 0.146 0.854 35 H 0.111 0.889 36 H 0.111 0.889 37 H 0.408 0.592 38 H 0.113 0.887 39 H 0.111 0.889 40 H 0.297 0.703 41 H 0.108 0.892 42 H 0.109 0.891 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.486 20.166 -1.580 21.568 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C -0.040 4.040 3 C -0.160 4.160 4 C -0.095 4.095 5 C -0.159 4.159 6 C -0.090 4.090 7 C -0.193 4.193 8 C 0.276 3.724 9 O -0.346 6.346 10 C -0.049 4.049 11 N -0.382 5.382 12 C 0.370 3.630 13 O -0.481 6.481 14 C -0.300 4.300 15 C -0.075 4.075 16 C -0.218 4.218 17 C 0.098 3.902 18 C -0.498 4.498 19 H 0.106 0.894 20 C -0.184 4.184 21 N -0.423 5.423 22 Si 0.808 3.192 23 H -0.185 1.185 24 H -0.187 1.187 25 H -0.179 1.179 26 C -0.270 4.270 27 C -0.048 4.048 28 H 0.088 0.912 29 H 0.099 0.901 30 H 0.089 0.911 31 H 0.166 0.834 32 H 0.176 0.824 33 H 0.173 0.827 34 H 0.164 0.836 35 H 0.128 0.872 36 H 0.128 0.872 37 H 0.246 0.754 38 H 0.131 0.869 39 H 0.129 0.871 40 H 0.108 0.892 41 H 0.126 0.874 42 H 0.127 0.873 Dipole moment (debyes) X Y Z Total from point charges 7.512 20.161 -1.425 21.562 hybrid contribution -0.991 -0.614 0.143 1.174 sum 6.521 19.547 -1.282 20.646 Atomic orbital electron populations 1.21061 0.90553 1.03376 1.02916 1.20410 0.96836 0.92547 0.94157 1.21363 0.95120 0.97501 1.02020 1.21852 0.93949 0.99691 0.93969 1.21512 1.01798 0.91663 1.00918 1.21748 0.92056 1.00494 0.94690 1.20134 0.95211 0.93017 1.10985 1.22668 0.88589 0.90388 0.70778 1.90492 1.17068 1.89298 1.37738 1.21676 0.93273 0.84458 1.05480 1.45643 1.11583 1.04795 1.76173 1.18316 0.87501 0.82861 0.74282 1.90609 1.17801 1.85683 1.53974 1.19132 0.93088 0.92796 1.24948 1.20700 0.92165 0.98088 0.96552 1.20995 0.99078 0.92400 1.09296 1.18153 0.92152 0.93664 0.86227 1.20132 0.99746 0.99434 1.30454 0.89364 1.26988 1.01679 0.97912 0.91785 1.69771 1.26243 1.28817 1.17495 0.85081 0.75989 0.77913 0.80172 1.18456 1.18730 1.17921 1.20878 0.93095 0.97761 1.15288 1.20525 0.98361 0.91783 0.94177 0.91167 0.90107 0.91059 0.83353 0.82443 0.82655 0.83614 0.87175 0.87162 0.75363 0.86891 0.87072 0.89202 0.87367 0.87310 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.44 8.73 71.24 0.62 -1.82 16 2 C -0.04 -0.76 5.92 -19.56 -0.12 -0.87 16 3 C -0.14 -1.96 9.66 22.23 0.21 -1.74 16 4 C -0.08 -0.82 10.04 22.35 0.22 -0.60 16 5 C -0.14 -1.66 10.03 22.23 0.22 -1.43 16 6 C -0.07 -1.14 9.47 22.58 0.21 -0.93 16 7 C -0.19 -4.01 5.87 -20.15 -0.12 -4.13 16 8 C 0.40 10.08 7.12 28.03 0.20 10.28 16 9 O -0.47 -14.19 12.65 -2.96 -0.04 -14.23 16 10 C 0.08 2.02 4.85 85.63 0.42 2.44 16 11 N -0.73 -25.50 5.48 -469.88 -2.57 -28.08 16 12 C 0.58 24.74 7.76 86.73 0.67 25.41 16 13 O -0.60 -27.62 16.32 -4.00 -0.07 -27.68 16 14 C -0.30 -13.91 5.89 -19.94 -0.12 -14.03 16 15 C -0.06 -2.62 9.47 22.25 0.21 -2.41 16 16 C -0.20 -10.21 8.63 22.47 0.19 -10.02 16 17 C 0.10 5.37 5.57 -21.28 -0.12 5.25 16 18 C -0.47 -24.06 9.04 23.46 0.21 -23.84 16 19 H 0.09 4.29 7.91 -2.91 -0.02 4.26 16 20 C 0.04 1.67 5.14 85.35 0.44 2.10 16 21 N -0.80 -39.27 10.96 21.87 0.24 -39.03 16 22 Si 0.99 35.34 29.59 68.60 2.03 37.37 16 23 H -0.26 -8.95 7.11 99.48 0.71 -8.24 16 24 H -0.26 -8.93 7.11 99.48 0.71 -8.22 16 25 H -0.26 -9.00 7.11 99.48 0.71 -8.29 16 26 C -0.25 -12.55 9.73 22.47 0.22 -12.33 16 27 C -0.03 -1.42 9.52 22.25 0.21 -1.21 16 28 H 0.07 1.46 8.14 -2.38 -0.02 1.44 16 29 H 0.08 1.20 8.04 -2.38 -0.02 1.18 16 30 H 0.07 1.74 5.86 -2.39 -0.01 1.72 16 31 H 0.15 1.35 8.05 -2.91 -0.02 1.32 16 32 H 0.16 0.69 8.06 -2.91 -0.02 0.67 16 33 H 0.16 0.99 8.06 -2.91 -0.02 0.97 16 34 H 0.15 1.90 6.99 -2.91 -0.02 1.88 16 35 H 0.11 2.73 7.91 -2.38 -0.02 2.71 16 36 H 0.11 2.73 8.14 -2.39 -0.02 2.71 16 37 H 0.41 14.19 5.44 -92.71 -0.50 13.68 16 38 H 0.11 4.63 6.37 -2.91 -0.02 4.61 16 39 H 0.11 5.83 6.18 -2.91 -0.02 5.81 16 40 H 0.30 12.97 8.29 -92.71 -0.77 12.20 16 41 H 0.11 5.02 8.06 -2.91 -0.02 5.00 16 42 H 0.11 5.01 7.63 -2.91 -0.02 4.99 16 Total: -1.00 -65.08 357.93 3.96 -61.12 By element: Atomic # 1 Polarization: 39.83 SS G_CDS: 0.56 Total: 40.40 kcal Atomic # 6 Polarization: -33.67 SS G_CDS: 3.80 Total: -29.87 kcal Atomic # 7 Polarization: -64.78 SS G_CDS: -2.33 Total: -67.11 kcal Atomic # 8 Polarization: -41.81 SS G_CDS: -0.10 Total: -41.91 kcal Atomic # 14 Polarization: 35.34 SS G_CDS: 2.03 Total: 37.37 kcal Total: -65.08 3.96 -61.12 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001363191233.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.755 kcal (2) G-P(sol) polarization free energy of solvation -65.078 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.323 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.958 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.121 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.366 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds