Wall clock time and date at job start Tue Mar 31 2020 13:44:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53009 * 1 3 3 C 1.52993 * 115.55835 * 2 1 4 4 C 1.52995 * 117.49896 * 145.68499 * 2 1 3 5 5 N 1.46492 * 117.50081 * 214.98495 * 4 2 1 6 6 S 1.65603 * 120.00408 * 146.02891 * 5 4 2 7 7 O 1.42095 * 106.40033 * 309.99473 * 6 5 4 8 8 O 1.42100 * 106.40264 * 177.07163 * 6 5 4 9 9 C 1.76200 * 107.21775 * 63.53244 * 6 5 4 10 10 C 1.37637 * 120.12897 * 244.87477 * 9 6 5 11 11 C 1.38611 * 120.24729 * 179.74497 * 10 9 6 12 12 C 1.38657 * 120.50500 * 0.25634 * 11 10 9 13 13 C 1.37593 * 120.24532 * 0.02562 * 12 11 10 14 14 C 1.40699 * 120.12601 * 65.14595 * 9 6 5 15 15 C 1.41390 * 120.24957 * 0.02562 * 14 9 6 16 16 H 1.08001 * 119.99952 * 326.35102 * 15 14 9 17 17 C 1.39947 * 120.00402 * 146.34509 * 15 14 9 18 18 N 1.30823 * 119.99584 * 1.32901 * 17 15 14 19 19 Si 1.86802 * 120.00132 * 181.32814 * 17 15 14 20 20 H 1.48500 * 109.47023 * 65.00308 * 19 17 15 21 21 H 1.48502 * 109.47021 * 185.00148 * 19 17 15 22 22 H 1.48502 * 109.47107 * 305.00125 * 19 17 15 23 23 C 1.52995 * 60.03138 * 107.47987 * 4 2 1 24 24 C 1.53000 * 117.49713 * 107.50127 * 23 4 2 25 25 C 1.53007 * 117.50056 * 252.51861 * 23 4 2 26 26 H 1.08997 * 109.47404 * 330.43876 * 1 2 3 27 27 H 1.09001 * 109.46917 * 90.44152 * 1 2 3 28 28 H 1.08995 * 109.46959 * 210.43413 * 1 2 3 29 29 H 1.09003 * 109.47263 * 154.29595 * 3 2 1 30 30 H 1.09002 * 109.47274 * 274.29513 * 3 2 1 31 31 H 1.09002 * 109.47190 * 34.29421 * 3 2 1 32 32 H 1.09007 * 117.49937 * 359.97438 * 4 2 1 33 33 H 0.97005 * 120.00090 * 326.02875 * 5 4 2 34 34 H 1.07994 * 119.87272 * 0.02777 * 10 9 6 35 35 H 1.08009 * 119.74526 * 180.23837 * 11 10 9 36 36 H 1.07994 * 119.87562 * 179.97438 * 12 11 10 37 37 H 1.08001 * 120.12779 * 180.02562 * 13 12 11 38 38 H 0.97006 * 119.99763 * 179.97438 * 18 17 15 39 39 H 1.09000 * 109.47178 * 111.39399 * 24 23 4 40 40 H 1.08997 * 109.47066 * 231.38782 * 24 23 4 41 41 H 1.08994 * 109.47203 * 351.39128 * 24 23 4 42 42 H 1.09001 * 109.46867 * 8.61251 * 25 23 4 43 43 H 1.09003 * 109.46947 * 128.60946 * 25 23 4 44 44 H 1.08998 * 109.47258 * 248.61191 * 25 23 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.1901 1.3802 0.0000 4 6 2.2365 -1.1209 0.7651 5 7 3.4932 -0.7905 1.4415 6 16 3.8840 -1.5308 2.8704 7 8 2.7466 -1.4034 3.7125 8 8 5.1740 -1.0549 3.2292 9 6 4.0640 -3.2511 2.5344 10 6 3.1967 -4.1594 3.0975 11 6 3.3329 -5.5128 2.8306 12 6 4.3450 -5.9679 1.9993 13 6 5.2269 -5.0784 1.4301 14 6 5.0983 -3.7019 1.6938 15 6 5.9991 -2.7787 1.1147 16 1 5.6570 -1.7931 0.8355 17 6 7.3340 -3.1419 0.9034 18 7 7.7423 -4.3444 1.2177 19 14 8.5327 -1.9097 0.1725 20 1 8.7127 -0.7757 1.1143 21 1 9.8415 -2.5713 -0.0614 22 1 7.9970 -1.4025 -1.1163 23 6 2.2368 -1.1218 -0.7649 24 6 3.5495 -0.7776 -1.4713 25 6 1.3590 -2.1573 -1.4709 26 1 -0.3634 0.8939 0.5070 27 1 -0.3633 -0.0079 -1.0277 28 1 -0.3633 -0.8860 0.5205 29 1 3.1823 1.3085 0.4457 30 1 2.2775 1.7412 -1.0248 31 1 1.5810 2.0743 0.5790 32 1 1.6112 -1.8582 1.2688 33 1 4.0964 -0.1380 1.0525 34 1 2.4045 -3.8160 3.7461 35 1 2.6454 -6.2182 3.2738 36 1 4.4419 -7.0246 1.7987 37 1 6.0144 -5.4350 0.7826 38 1 8.6675 -4.5963 1.0708 39 1 3.9370 -1.6654 -1.9710 40 1 3.3710 0.0053 -2.2084 41 1 4.2758 -0.4273 -0.7379 42 1 0.7296 -2.6608 -0.7372 43 1 0.7298 -1.6582 -2.2079 44 1 1.9923 -2.8903 -1.9706 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001364822480.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:44:27 Heat of formation + Delta-G solvation = -44.529664 kcal Electronic energy + Delta-G solvation = -26965.027060 eV Core-core repulsion = 23395.328635 eV Total energy + Delta-G solvation = -3569.698425 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 323.134 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -39.48099 -37.58765 -36.21302 -34.84714 -33.85359 -32.73722 -31.00670 -30.20386 -29.54460 -28.44429 -26.47336 -26.12363 -25.50298 -21.66024 -21.13924 -20.16933 -18.74695 -17.71509 -17.59876 -16.88419 -16.26650 -15.66551 -15.33784 -14.62281 -14.38004 -14.28600 -13.97281 -13.45518 -13.30420 -13.14920 -12.74081 -12.56645 -12.48143 -12.39404 -12.16009 -11.95341 -11.84391 -11.65173 -11.42801 -11.37875 -11.29056 -11.21691 -11.14517 -11.08435 -11.02457 -10.81183 -10.71547 -10.61170 -10.48933 -9.93710 -9.46642 -9.24086 -9.13776 -8.31754 -8.03502 -7.52968 -6.93004 -4.76322 1.49546 2.32980 2.76140 2.98142 2.99982 3.15615 3.81144 3.84470 3.87332 4.46081 4.69844 4.80834 4.86866 4.93742 5.18931 5.28166 5.33371 5.55857 5.60984 5.64550 5.69361 5.84786 5.89444 5.97362 6.01304 6.04345 6.11275 6.14190 6.16221 6.18428 6.24243 6.26143 6.38647 6.48447 6.58097 6.66390 6.80676 6.97182 7.09709 7.31910 7.47135 7.52727 7.70515 7.80691 7.90839 8.30326 8.55052 8.66448 9.97098 Molecular weight = 323.13amu Principal moments of inertia in cm(-1) A = 0.011250 B = 0.006509 C = 0.005555 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2488.188808 B = 4300.461745 C = 5038.999535 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.111 4.111 2 C -0.137 4.137 3 C -0.113 4.113 4 C 0.120 3.880 5 N -1.089 6.089 6 S 2.699 3.301 7 O -0.995 6.995 8 O -0.963 6.963 9 C -0.766 4.766 10 C -0.009 4.009 11 C -0.244 4.244 12 C -0.079 4.079 13 C -0.153 4.153 14 C 0.189 3.811 15 C -0.447 4.447 16 H 0.084 0.916 17 C 0.081 3.919 18 N -0.789 5.789 19 Si 0.913 3.087 20 H -0.256 1.256 21 H -0.275 1.275 22 H -0.260 1.260 23 C -0.127 4.127 24 C -0.113 4.113 25 C -0.111 4.111 26 H 0.057 0.943 27 H 0.057 0.943 28 H 0.058 0.942 29 H 0.058 0.942 30 H 0.057 0.943 31 H 0.058 0.942 32 H 0.131 0.869 33 H 0.410 0.590 34 H 0.107 0.893 35 H 0.094 0.906 36 H 0.094 0.906 37 H 0.132 0.868 38 H 0.286 0.714 39 H 0.064 0.936 40 H 0.053 0.947 41 H 0.061 0.939 42 H 0.057 0.943 43 H 0.055 0.945 44 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.889 5.376 -6.745 11.689 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C -0.140 4.140 3 C -0.170 4.170 4 C 0.010 3.990 5 N -0.842 5.842 6 S 2.797 3.203 7 O -0.986 6.986 8 O -0.953 6.953 9 C -0.861 4.861 10 C -0.029 4.029 11 C -0.264 4.264 12 C -0.098 4.098 13 C -0.173 4.173 14 C 0.184 3.816 15 C -0.477 4.477 16 H 0.102 0.898 17 C -0.139 4.139 18 N -0.414 5.414 19 Si 0.737 3.263 20 H -0.180 1.180 21 H -0.200 1.200 22 H -0.184 1.184 23 C -0.130 4.130 24 C -0.170 4.170 25 C -0.168 4.168 26 H 0.076 0.924 27 H 0.076 0.924 28 H 0.077 0.923 29 H 0.077 0.923 30 H 0.076 0.924 31 H 0.077 0.923 32 H 0.148 0.852 33 H 0.246 0.754 34 H 0.125 0.875 35 H 0.112 0.888 36 H 0.112 0.888 37 H 0.149 0.851 38 H 0.097 0.903 39 H 0.083 0.917 40 H 0.071 0.929 41 H 0.079 0.921 42 H 0.076 0.924 43 H 0.074 0.926 44 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -7.659 5.572 -5.806 11.109 hybrid contribution 0.938 -0.103 -0.816 1.248 sum -6.720 5.469 -6.622 10.905 Atomic orbital electron populations 1.21298 0.92054 1.02001 1.01440 1.22169 0.94761 0.91914 1.05168 1.21258 1.00432 0.93999 1.01335 1.21634 0.86848 0.99465 0.91028 1.55421 1.28233 1.56716 1.43862 1.01163 0.72571 0.74700 0.71867 1.93456 1.53109 1.87396 1.64607 1.93551 1.39781 1.81008 1.80965 1.29931 1.14308 1.20956 1.20945 1.20255 0.94888 0.93263 0.94454 1.20520 1.03108 0.94804 1.08012 1.20950 0.94849 0.97774 0.96219 1.21687 0.99549 0.93368 1.02649 1.17018 0.86691 0.93044 0.84803 1.19725 0.93744 0.99723 1.34467 0.89787 1.25892 0.99478 0.95901 0.92615 1.69726 1.18543 1.18648 1.34452 0.86239 0.78675 0.81152 0.80266 1.18025 1.20002 1.18386 1.22114 0.97916 0.98836 0.94097 1.21256 0.94601 1.01479 0.99684 1.21290 0.98613 0.97128 0.99781 0.92362 0.92360 0.92270 0.92293 0.92427 0.92302 0.85155 0.75384 0.87454 0.88750 0.88823 0.85079 0.90299 0.91697 0.92854 0.92051 0.92420 0.92565 0.91956 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.20 8.96 37.16 0.33 -0.87 16 2 C -0.14 -1.76 2.70 -154.48 -0.42 -2.18 16 3 C -0.11 -1.33 8.82 37.15 0.33 -1.00 16 4 C 0.12 1.87 5.70 -67.94 -0.39 1.49 16 5 N -1.09 -19.24 4.22 -4.90 -0.02 -19.26 16 6 S 2.70 59.02 4.95 -107.50 -0.53 58.49 16 7 O -1.00 -22.68 16.76 -57.17 -0.96 -23.64 16 8 O -0.96 -23.92 16.65 -57.17 -0.95 -24.87 16 9 C -0.77 -18.11 5.91 -38.87 -0.23 -18.34 16 10 C -0.01 -0.20 9.53 -39.66 -0.38 -0.57 16 11 C -0.24 -5.27 10.05 -39.29 -0.39 -5.67 16 12 C -0.08 -1.75 10.02 -39.66 -0.40 -2.15 16 13 C -0.15 -3.74 8.66 -38.87 -0.34 -4.07 16 14 C 0.19 4.75 5.55 -106.82 -0.59 4.15 16 15 C -0.45 -11.05 7.48 -37.74 -0.28 -11.33 16 16 H 0.08 1.92 6.03 -52.49 -0.32 1.61 16 17 C 0.08 1.94 5.40 -17.34 -0.09 1.85 16 18 N -0.79 -19.39 10.65 55.55 0.59 -18.79 16 19 Si 0.91 18.24 29.56 -169.99 -5.02 13.22 16 20 H -0.26 -5.27 7.11 56.52 0.40 -4.87 16 21 H -0.28 -5.30 7.11 56.52 0.40 -4.90 16 22 H -0.26 -4.90 7.11 56.52 0.40 -4.50 16 23 C -0.13 -1.73 2.70 -154.47 -0.42 -2.15 16 24 C -0.11 -1.54 8.82 37.16 0.33 -1.21 16 25 C -0.11 -1.34 8.86 37.16 0.33 -1.01 16 26 H 0.06 0.59 7.86 -51.93 -0.41 0.18 16 27 H 0.06 0.56 7.78 -51.93 -0.40 0.15 16 28 H 0.06 0.64 7.88 -51.93 -0.41 0.23 16 29 H 0.06 0.73 5.78 -51.93 -0.30 0.43 16 30 H 0.06 0.60 8.02 -51.93 -0.42 0.19 16 31 H 0.06 0.64 7.88 -51.93 -0.41 0.23 16 32 H 0.13 2.09 7.91 -51.92 -0.41 1.68 16 33 H 0.41 6.61 5.30 -34.47 -0.18 6.42 16 34 H 0.11 2.23 7.32 -52.49 -0.38 1.85 16 35 H 0.09 1.77 8.06 -52.48 -0.42 1.35 16 36 H 0.09 1.81 8.06 -52.49 -0.42 1.39 16 37 H 0.13 3.26 6.19 -52.49 -0.32 2.94 16 38 H 0.29 6.39 8.30 -40.82 -0.34 6.06 16 39 H 0.06 0.92 7.92 -51.93 -0.41 0.51 16 40 H 0.05 0.62 8.02 -51.93 -0.42 0.21 16 41 H 0.06 0.88 5.79 -51.93 -0.30 0.58 16 42 H 0.06 0.69 7.90 -51.93 -0.41 0.27 16 43 H 0.06 0.58 7.84 -51.93 -0.41 0.17 16 44 H 0.06 0.78 7.92 -51.93 -0.41 0.36 16 LS Contribution 361.05 15.07 5.44 5.44 Total: -1.00 -29.58 361.05 -10.37 -39.95 By element: Atomic # 1 Polarization: 18.85 SS G_CDS: -6.30 Total: 12.54 kcal Atomic # 6 Polarization: -40.46 SS G_CDS: -2.61 Total: -43.07 kcal Atomic # 7 Polarization: -38.63 SS G_CDS: 0.57 Total: -38.06 kcal Atomic # 8 Polarization: -46.60 SS G_CDS: -1.91 Total: -48.51 kcal Atomic # 14 Polarization: 18.24 SS G_CDS: -5.02 Total: 13.22 kcal Atomic # 16 Polarization: 59.02 SS G_CDS: -0.53 Total: 58.49 kcal Total LS contribution 5.44 Total: 5.44 kcal Total: -29.58 -10.37 -39.95 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001364822480.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.579 kcal (2) G-P(sol) polarization free energy of solvation -29.582 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.161 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.369 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.951 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.530 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds