Wall clock time and date at job start Tue Mar 31 2020 13:44:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53009 * 1 3 3 C 1.52993 * 115.55835 * 2 1 4 4 C 1.52995 * 117.49896 * 145.68499 * 2 1 3 5 5 N 1.46492 * 117.50081 * 214.98495 * 4 2 1 6 6 S 1.65603 * 120.00408 * 146.02891 * 5 4 2 7 7 O 1.42095 * 106.40033 * 309.99473 * 6 5 4 8 8 O 1.42100 * 106.40264 * 177.07163 * 6 5 4 9 9 C 1.76200 * 107.21775 * 63.53244 * 6 5 4 10 10 C 1.37637 * 120.12897 * 244.87477 * 9 6 5 11 11 C 1.38611 * 120.24729 * 179.74497 * 10 9 6 12 12 C 1.38657 * 120.50500 * 0.25634 * 11 10 9 13 13 C 1.37593 * 120.24532 * 0.02562 * 12 11 10 14 14 C 1.40699 * 120.12601 * 65.14595 * 9 6 5 15 15 C 1.41390 * 120.24957 * 0.02562 * 14 9 6 16 16 H 1.08001 * 119.99952 * 326.35102 * 15 14 9 17 17 C 1.39947 * 120.00402 * 146.34509 * 15 14 9 18 18 N 1.30823 * 119.99584 * 1.32901 * 17 15 14 19 19 Si 1.86802 * 120.00132 * 181.32814 * 17 15 14 20 20 H 1.48500 * 109.47023 * 65.00308 * 19 17 15 21 21 H 1.48502 * 109.47021 * 185.00148 * 19 17 15 22 22 H 1.48502 * 109.47107 * 305.00125 * 19 17 15 23 23 C 1.52995 * 60.03138 * 107.47987 * 4 2 1 24 24 C 1.53000 * 117.49713 * 107.50127 * 23 4 2 25 25 C 1.53007 * 117.50056 * 252.51861 * 23 4 2 26 26 H 1.08997 * 109.47404 * 330.43876 * 1 2 3 27 27 H 1.09001 * 109.46917 * 90.44152 * 1 2 3 28 28 H 1.08995 * 109.46959 * 210.43413 * 1 2 3 29 29 H 1.09003 * 109.47263 * 154.29595 * 3 2 1 30 30 H 1.09002 * 109.47274 * 274.29513 * 3 2 1 31 31 H 1.09002 * 109.47190 * 34.29421 * 3 2 1 32 32 H 1.09007 * 117.49937 * 359.97438 * 4 2 1 33 33 H 0.97005 * 120.00090 * 326.02875 * 5 4 2 34 34 H 1.07994 * 119.87272 * 0.02777 * 10 9 6 35 35 H 1.08009 * 119.74526 * 180.23837 * 11 10 9 36 36 H 1.07994 * 119.87562 * 179.97438 * 12 11 10 37 37 H 1.08001 * 120.12779 * 180.02562 * 13 12 11 38 38 H 0.97006 * 119.99763 * 179.97438 * 18 17 15 39 39 H 1.09000 * 109.47178 * 111.39399 * 24 23 4 40 40 H 1.08997 * 109.47066 * 231.38782 * 24 23 4 41 41 H 1.08994 * 109.47203 * 351.39128 * 24 23 4 42 42 H 1.09001 * 109.46867 * 8.61251 * 25 23 4 43 43 H 1.09003 * 109.46947 * 128.60946 * 25 23 4 44 44 H 1.08998 * 109.47258 * 248.61191 * 25 23 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.1901 1.3802 0.0000 4 6 2.2365 -1.1209 0.7651 5 7 3.4932 -0.7905 1.4415 6 16 3.8840 -1.5308 2.8704 7 8 2.7466 -1.4034 3.7125 8 8 5.1740 -1.0549 3.2292 9 6 4.0640 -3.2511 2.5344 10 6 3.1967 -4.1594 3.0975 11 6 3.3329 -5.5128 2.8306 12 6 4.3450 -5.9679 1.9993 13 6 5.2269 -5.0784 1.4301 14 6 5.0983 -3.7019 1.6938 15 6 5.9991 -2.7787 1.1147 16 1 5.6570 -1.7931 0.8355 17 6 7.3340 -3.1419 0.9034 18 7 7.7423 -4.3444 1.2177 19 14 8.5327 -1.9097 0.1725 20 1 8.7127 -0.7757 1.1143 21 1 9.8415 -2.5713 -0.0614 22 1 7.9970 -1.4025 -1.1163 23 6 2.2368 -1.1218 -0.7649 24 6 3.5495 -0.7776 -1.4713 25 6 1.3590 -2.1573 -1.4709 26 1 -0.3634 0.8939 0.5070 27 1 -0.3633 -0.0079 -1.0277 28 1 -0.3633 -0.8860 0.5205 29 1 3.1823 1.3085 0.4457 30 1 2.2775 1.7412 -1.0248 31 1 1.5810 2.0743 0.5790 32 1 1.6112 -1.8582 1.2688 33 1 4.0964 -0.1380 1.0525 34 1 2.4045 -3.8160 3.7461 35 1 2.6454 -6.2182 3.2738 36 1 4.4419 -7.0246 1.7987 37 1 6.0144 -5.4350 0.7826 38 1 8.6675 -4.5963 1.0708 39 1 3.9370 -1.6654 -1.9710 40 1 3.3710 0.0053 -2.2084 41 1 4.2758 -0.4273 -0.7379 42 1 0.7296 -2.6608 -0.7372 43 1 0.7298 -1.6582 -2.2079 44 1 1.9923 -2.8903 -1.9706 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001364822480.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:44:26 Heat of formation + Delta-G solvation = -61.346845 kcal Electronic energy + Delta-G solvation = -26965.756307 eV Core-core repulsion = 23395.328635 eV Total energy + Delta-G solvation = -3570.427673 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 323.134 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -40.58109 -39.37036 -38.03796 -36.69149 -35.63679 -34.09948 -32.04243 -31.93485 -31.34119 -29.42859 -27.60274 -27.28556 -27.06023 -23.43863 -22.93085 -21.39207 -20.37074 -19.50458 -18.61590 -18.55957 -17.87260 -17.23074 -16.99084 -16.09861 -16.01560 -15.53164 -15.19138 -15.05868 -14.90943 -14.49497 -14.45957 -13.78581 -13.62793 -13.41831 -13.32866 -13.18140 -13.07765 -12.99709 -12.97598 -12.88186 -12.84412 -12.82401 -12.76927 -12.58862 -12.46940 -12.37355 -12.15916 -12.08414 -11.68165 -11.62243 -11.22362 -10.97587 -10.20640 -9.83396 -9.56397 -9.34916 -8.70650 -6.61234 -0.20475 0.52431 0.99185 1.34666 1.45102 1.52344 2.16045 2.27591 2.67581 2.76916 3.00184 3.46158 3.68346 3.78518 3.85142 3.95043 4.19137 4.28962 4.29970 4.33440 4.51944 4.66299 4.71005 4.81497 4.90631 4.93874 4.99803 5.04769 5.07741 5.12376 5.15963 5.17760 5.19124 5.23631 5.26611 5.31080 5.48753 5.50754 5.53962 5.63065 5.70774 5.87706 6.00909 6.09926 6.16296 6.49383 6.72372 6.85162 8.22007 Molecular weight = 323.13amu Principal moments of inertia in cm(-1) A = 0.011250 B = 0.006509 C = 0.005555 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2488.188808 B = 4300.461745 C = 5038.999535 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.112 4.112 2 C -0.116 4.116 3 C -0.118 4.118 4 C 0.080 3.920 5 N -1.077 6.077 6 S 2.719 3.281 7 O -1.007 7.007 8 O -0.998 6.998 9 C -0.781 4.781 10 C -0.022 4.022 11 C -0.243 4.243 12 C -0.078 4.078 13 C -0.180 4.180 14 C 0.165 3.835 15 C -0.473 4.473 16 H 0.091 0.909 17 C 0.039 3.961 18 N -0.819 5.819 19 Si 0.968 3.032 20 H -0.267 1.267 21 H -0.263 1.263 22 H -0.241 1.241 23 C -0.123 4.123 24 C -0.115 4.115 25 C -0.110 4.110 26 H 0.067 0.933 27 H 0.077 0.923 28 H 0.056 0.944 29 H 0.048 0.952 30 H 0.075 0.925 31 H 0.069 0.931 32 H 0.122 0.878 33 H 0.417 0.583 34 H 0.122 0.878 35 H 0.128 0.872 36 H 0.122 0.878 37 H 0.120 0.880 38 H 0.292 0.708 39 H 0.053 0.947 40 H 0.076 0.924 41 H 0.048 0.952 42 H 0.056 0.944 43 H 0.079 0.921 44 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.218 6.221 -8.060 13.735 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C -0.119 4.119 3 C -0.175 4.175 4 C -0.028 4.028 5 N -0.835 5.835 6 S 2.816 3.184 7 O -0.997 6.997 8 O -0.989 6.989 9 C -0.875 4.875 10 C -0.042 4.042 11 C -0.263 4.263 12 C -0.096 4.096 13 C -0.200 4.200 14 C 0.161 3.839 15 C -0.502 4.502 16 H 0.109 0.891 17 C -0.177 4.177 18 N -0.444 5.444 19 Si 0.788 3.212 20 H -0.192 1.192 21 H -0.187 1.187 22 H -0.164 1.164 23 C -0.126 4.126 24 C -0.172 4.172 25 C -0.168 4.168 26 H 0.086 0.914 27 H 0.096 0.904 28 H 0.075 0.925 29 H 0.067 0.933 30 H 0.094 0.906 31 H 0.088 0.912 32 H 0.139 0.861 33 H 0.255 0.745 34 H 0.139 0.861 35 H 0.146 0.854 36 H 0.140 0.860 37 H 0.138 0.862 38 H 0.103 0.897 39 H 0.072 0.928 40 H 0.095 0.905 41 H 0.067 0.933 42 H 0.075 0.925 43 H 0.098 0.902 44 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -9.000 6.391 -7.129 13.141 hybrid contribution 1.229 -0.406 -0.377 1.348 sum -7.771 5.985 -7.506 12.351 Atomic orbital electron populations 1.21366 0.90323 1.02422 1.02831 1.22307 0.95941 0.91612 1.02011 1.21349 0.99976 0.93564 1.02660 1.21913 0.86477 1.02027 0.92397 1.54950 1.29305 1.56210 1.43009 1.00396 0.71574 0.74042 0.72424 1.93429 1.53166 1.87408 1.65745 1.93494 1.41671 1.81404 1.82287 1.30199 1.14224 1.22372 1.20690 1.20576 0.95129 0.93833 0.94612 1.20917 1.03094 0.95083 1.07179 1.21287 0.94044 0.98975 0.95315 1.21729 1.00486 0.93883 1.03895 1.17313 0.87436 0.93658 0.85526 1.20000 0.94479 1.00224 1.35464 0.89101 1.26711 1.00743 0.97513 0.92757 1.69782 1.19230 1.20005 1.35360 0.85435 0.77189 0.78608 0.79990 1.19196 1.18692 1.16397 1.22207 0.98290 0.99661 0.92422 1.21279 0.94363 1.01744 0.99837 1.21315 0.98527 0.96793 1.00122 0.91366 0.90420 0.92542 0.93307 0.90582 0.91231 0.86083 0.74479 0.86063 0.85432 0.85997 0.86245 0.89729 0.92756 0.90506 0.93261 0.92456 0.90181 0.92780 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -2.12 8.96 71.99 0.65 -1.47 16 2 C -0.12 -2.73 2.70 -52.16 -0.14 -2.87 16 3 C -0.12 -2.50 8.82 71.98 0.63 -1.86 16 4 C 0.08 2.47 5.70 44.99 0.26 2.72 16 5 N -1.08 -38.27 4.22 -169.41 -0.71 -38.99 16 6 S 2.72 120.88 4.95 -56.49 -0.28 120.60 16 7 O -1.01 -46.15 16.76 -128.00 -2.15 -48.30 16 8 O -1.00 -50.87 16.65 -128.00 -2.13 -53.00 16 9 C -0.78 -37.51 5.91 22.73 0.13 -37.37 16 10 C -0.02 -0.97 9.53 22.22 0.21 -0.76 16 11 C -0.24 -10.16 10.05 22.46 0.23 -9.93 16 12 C -0.08 -3.39 10.02 22.22 0.22 -3.17 16 13 C -0.18 -8.98 8.66 22.73 0.20 -8.79 16 14 C 0.17 8.49 5.55 -21.29 -0.12 8.37 16 15 C -0.47 -23.93 7.48 23.46 0.18 -23.76 16 16 H 0.09 4.28 6.03 -2.91 -0.02 4.26 16 17 C 0.04 1.91 5.40 85.26 0.46 2.37 16 18 N -0.82 -41.17 10.65 21.83 0.23 -40.94 16 19 Si 0.97 37.44 29.56 68.60 2.03 39.47 16 20 H -0.27 -10.74 7.11 99.48 0.71 -10.03 16 21 H -0.26 -9.53 7.11 99.48 0.71 -8.82 16 22 H -0.24 -8.48 7.11 99.48 0.71 -7.78 16 23 C -0.12 -3.17 2.70 -52.16 -0.14 -3.31 16 24 C -0.11 -2.99 8.82 71.98 0.64 -2.36 16 25 C -0.11 -2.48 8.86 71.98 0.64 -1.85 16 26 H 0.07 1.16 7.86 -2.39 -0.02 1.14 16 27 H 0.08 1.19 7.78 -2.39 -0.02 1.17 16 28 H 0.06 1.11 7.88 -2.39 -0.02 1.09 16 29 H 0.05 1.13 5.78 -2.39 -0.01 1.12 16 30 H 0.08 1.34 8.02 -2.39 -0.02 1.32 16 31 H 0.07 1.32 7.88 -2.39 -0.02 1.30 16 32 H 0.12 3.90 7.91 -2.38 -0.02 3.88 16 33 H 0.42 13.54 5.30 -96.74 -0.51 13.03 16 34 H 0.12 4.97 7.32 -2.91 -0.02 4.95 16 35 H 0.13 4.43 8.06 -2.91 -0.02 4.41 16 36 H 0.12 4.53 8.06 -2.91 -0.02 4.50 16 37 H 0.12 6.15 6.19 -2.91 -0.02 6.13 16 38 H 0.29 13.31 8.30 -92.70 -0.77 12.54 16 39 H 0.05 1.51 7.92 -2.39 -0.02 1.49 16 40 H 0.08 1.61 8.02 -2.39 -0.02 1.59 16 41 H 0.05 1.39 5.79 -2.39 -0.01 1.38 16 42 H 0.06 1.28 7.90 -2.39 -0.02 1.26 16 43 H 0.08 1.41 7.84 -2.39 -0.02 1.40 16 44 H 0.05 1.29 7.92 -2.39 -0.02 1.28 16 Total: -1.00 -64.12 361.05 1.53 -62.59 By element: Atomic # 1 Polarization: 42.11 SS G_CDS: 0.50 Total: 42.61 kcal Atomic # 6 Polarization: -88.08 SS G_CDS: 4.04 Total: -84.04 kcal Atomic # 7 Polarization: -79.45 SS G_CDS: -0.48 Total: -79.93 kcal Atomic # 8 Polarization: -97.02 SS G_CDS: -4.28 Total: -101.30 kcal Atomic # 14 Polarization: 37.44 SS G_CDS: 2.03 Total: 39.47 kcal Atomic # 16 Polarization: 120.88 SS G_CDS: -0.28 Total: 120.60 kcal Total: -64.12 1.53 -62.59 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001364822480.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.248 kcal (2) G-P(sol) polarization free energy of solvation -64.121 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.873 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.526 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.595 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.347 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds