Wall clock time and date at job start Tue Mar 31 2020 14:08:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.37915 * 120.08804 * 2 1 4 4 C 1.38375 * 120.17618 * 179.97438 * 3 2 1 5 5 C 1.38434 * 120.34621 * 0.02562 * 4 3 2 6 6 C 1.37868 * 120.17066 * 359.71495 * 5 4 3 7 7 C 1.39829 * 120.09014 * 179.97438 * 2 1 3 8 8 C 1.47164 * 120.17092 * 0.02814 * 7 2 1 9 9 O 1.21255 * 120.00380 * 354.12102 * 8 7 2 10 10 C 1.50701 * 120.00374 * 174.12093 * 8 7 2 11 11 N 1.46492 * 109.47559 * 179.97438 * 10 8 7 12 12 C 1.34778 * 120.00149 * 179.97438 * 11 10 8 13 13 O 1.21548 * 120.00201 * 0.02562 * 12 11 10 14 14 C 1.47884 * 119.99784 * 180.02562 * 12 11 10 15 15 C 1.39915 * 120.03195 * 359.97438 * 14 12 11 16 16 C 1.38325 * 120.36662 * 180.02562 * 15 14 12 17 17 C 1.37757 * 120.40911 * 0.02562 * 16 15 14 18 18 C 1.40751 * 120.03725 * 359.97438 * 17 16 15 19 19 C 1.41443 * 120.17552 * 180.02562 * 18 17 16 20 20 H 1.07998 * 120.00011 * 151.92859 * 19 18 17 21 21 C 1.39941 * 119.99978 * 331.93513 * 19 18 17 22 22 N 1.30821 * 119.99796 * 164.22816 * 21 19 18 23 23 Si 1.86795 * 119.99766 * 344.22916 * 21 19 18 24 24 H 1.48502 * 109.47574 * 92.45809 * 23 21 19 25 25 H 1.48501 * 109.47102 * 212.45619 * 23 21 19 26 26 H 1.48501 * 109.47597 * 332.45507 * 23 21 19 27 27 C 1.38998 * 120.02266 * 180.02562 * 14 12 11 28 28 H 1.08998 * 109.47024 * 263.99401 * 1 2 3 29 29 H 1.09003 * 109.47121 * 23.99287 * 1 2 3 30 30 H 1.09002 * 109.47093 * 143.99320 * 1 2 3 31 31 H 1.08001 * 119.91035 * 0.02562 * 3 2 1 32 32 H 1.07989 * 119.83220 * 179.97438 * 4 3 2 33 33 H 1.07993 * 119.91195 * 179.97438 * 5 4 3 34 34 H 1.07999 * 120.08568 * 180.27831 * 6 5 4 35 35 H 1.09000 * 109.47132 * 59.99716 * 10 8 7 36 36 H 1.09003 * 109.46680 * 300.00348 * 10 8 7 37 37 H 0.97002 * 119.99892 * 359.97438 * 11 10 8 38 38 H 1.08001 * 119.81523 * 0.05060 * 15 14 12 39 39 H 1.07997 * 119.79765 * 179.97438 * 16 15 14 40 40 H 1.08002 * 119.98183 * 180.02562 * 17 16 15 41 41 H 0.97002 * 119.99910 * 179.97438 * 22 21 19 42 42 H 1.07998 * 120.20503 * 0.25113 * 27 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1984 1.1933 0.0000 4 6 3.5821 1.1954 0.0005 5 6 4.2834 0.0018 0.0005 6 6 3.6067 -1.1993 0.0059 7 6 2.2080 -1.2099 0.0005 8 6 1.4780 -2.4877 0.0005 9 8 0.2702 -2.4960 0.1075 10 6 2.2315 -3.7860 -0.1326 11 7 1.2859 -4.9045 -0.1048 12 6 1.7362 -6.1705 -0.2096 13 8 2.9270 -6.3842 -0.3269 14 6 0.7815 -7.2995 -0.1821 15 6 -0.5893 -7.0543 -0.0466 16 6 -1.4883 -8.1052 -0.0195 17 6 -1.0448 -9.4052 -0.1250 18 6 0.3305 -9.6715 -0.2619 19 6 0.7890 -11.0051 -0.3710 20 1 1.7020 -11.2201 -0.9063 21 6 0.0595 -12.0459 0.2146 22 7 0.2942 -13.2851 -0.1327 23 14 -1.2491 -11.6656 1.4922 24 1 -2.5670 -11.5211 0.8231 25 1 -1.3139 -12.7731 2.4792 26 1 -0.9069 -10.4002 2.1899 27 6 1.2455 -8.6054 -0.2897 28 1 -0.3633 -0.1075 1.0220 29 1 -0.3633 0.9389 -0.4179 30 1 -0.3633 -0.8313 -0.6042 31 1 1.6584 2.1286 0.0004 32 1 4.1179 2.1331 0.0001 33 1 5.3633 0.0117 0.0005 34 1 4.1551 -2.1297 0.0105 35 1 2.9346 -3.8845 0.6944 36 1 2.7771 -3.7943 -1.0762 37 1 0.3356 -4.7340 -0.0108 38 1 -0.9474 -6.0388 0.0368 39 1 -2.5444 -7.9054 0.0859 40 1 -1.7529 -10.2204 -0.1034 41 1 -0.2112 -14.0066 0.2735 42 1 2.3031 -8.7997 -0.3895 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001413366301.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:08:53 Heat of formation + Delta-G solvation = -27.489586 kcal Electronic energy + Delta-G solvation = -25181.905508 eV Core-core repulsion = 21477.502045 eV Total energy + Delta-G solvation = -3704.403463 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 323.131 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -40.75993 -39.41670 -38.46566 -37.29198 -34.42040 -33.68703 -33.00936 -32.10333 -30.77510 -30.06345 -28.35508 -26.98389 -25.17614 -24.10646 -22.90210 -21.71643 -20.73868 -20.28330 -20.01854 -18.17220 -17.04257 -16.62840 -16.14432 -16.04066 -15.85347 -15.59539 -15.38704 -14.65869 -14.50814 -14.44789 -14.14338 -13.63752 -13.61349 -13.51319 -13.26913 -12.74755 -12.72871 -12.65968 -12.41768 -12.32301 -12.13790 -12.00722 -11.61375 -11.46730 -11.08026 -10.76912 -10.55150 -9.96459 -9.84845 -9.70815 -9.49804 -9.41053 -9.15778 -9.13344 -8.97774 -7.87201 -7.78006 -7.00716 -4.56169 0.27292 0.94903 1.88526 2.02461 2.52235 3.05082 3.17301 3.19469 3.25453 3.36123 3.57832 3.78301 3.92254 4.34126 4.43930 4.48196 4.58541 4.72069 4.90417 5.05153 5.19334 5.21080 5.27517 5.33932 5.40175 5.45762 5.51119 5.55042 5.84046 5.88403 5.90910 6.01441 6.05256 6.16921 6.35250 6.47316 6.52767 6.66160 6.68301 6.96579 7.15045 7.20008 7.40314 7.49722 7.72351 7.76684 7.98412 8.26984 8.51885 8.61749 8.70780 10.01343 Molecular weight = 323.13amu Principal moments of inertia in cm(-1) A = 0.030508 B = 0.002302 C = 0.002177 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 917.584685 B =12162.532585 C =12858.472339 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C -0.021 4.021 3 C -0.138 4.138 4 C -0.083 4.083 5 C -0.140 4.140 6 C -0.066 4.066 7 C -0.172 4.172 8 C 0.391 3.609 9 O -0.441 6.441 10 C 0.076 3.924 11 N -0.729 5.729 12 C 0.567 3.433 13 O -0.548 6.548 14 C -0.108 4.108 15 C -0.216 4.216 16 C -0.081 4.081 17 C -0.226 4.226 18 C 0.081 3.919 19 C -0.439 4.439 20 H 0.094 0.906 21 C 0.081 3.919 22 N -0.804 5.804 23 Si 0.916 3.084 24 H -0.270 1.270 25 H -0.292 1.292 26 H -0.244 1.244 27 C -0.135 4.135 28 H 0.078 0.922 29 H 0.061 0.939 30 H 0.093 0.907 31 H 0.128 0.872 32 H 0.127 0.873 33 H 0.130 0.870 34 H 0.136 0.864 35 H 0.102 0.898 36 H 0.102 0.898 37 H 0.410 0.590 38 H 0.098 0.902 39 H 0.100 0.900 40 H 0.104 0.896 41 H 0.287 0.713 42 H 0.116 0.884 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.594 25.689 1.465 25.861 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C -0.021 4.021 3 C -0.156 4.156 4 C -0.101 4.101 5 C -0.158 4.158 6 C -0.084 4.084 7 C -0.173 4.173 8 C 0.269 3.731 9 O -0.316 6.316 10 C -0.049 4.049 11 N -0.386 5.386 12 C 0.358 3.642 13 O -0.426 6.426 14 C -0.111 4.111 15 C -0.236 4.236 16 C -0.100 4.100 17 C -0.245 4.245 18 C 0.078 3.922 19 C -0.467 4.467 20 H 0.112 0.888 21 C -0.138 4.138 22 N -0.428 5.428 23 Si 0.743 3.257 24 H -0.196 1.196 25 H -0.219 1.219 26 H -0.167 1.167 27 C -0.156 4.156 28 H 0.096 0.904 29 H 0.080 0.920 30 H 0.112 0.888 31 H 0.146 0.854 32 H 0.145 0.855 33 H 0.148 0.852 34 H 0.154 0.846 35 H 0.120 0.880 36 H 0.120 0.880 37 H 0.249 0.751 38 H 0.116 0.884 39 H 0.118 0.882 40 H 0.122 0.878 41 H 0.097 0.903 42 H 0.134 0.866 Dipole moment (debyes) X Y Z Total from point charges 2.815 25.226 1.430 25.423 hybrid contribution -0.855 0.170 0.554 1.033 sum 1.960 25.396 1.983 25.548 Atomic orbital electron populations 1.21143 0.90084 1.03356 1.03670 1.20251 0.96815 0.91824 0.93232 1.21085 0.94353 0.97572 1.02625 1.21438 0.94259 0.98466 0.95932 1.21152 1.00446 0.92174 1.02022 1.21542 0.92802 0.99164 0.94924 1.20181 0.94351 0.93896 1.08880 1.22539 0.88931 0.89937 0.71663 1.90484 1.16030 1.88985 1.36127 1.21488 0.93604 0.85074 1.04715 1.45761 1.11262 1.04880 1.76679 1.18791 0.88400 0.82401 0.74644 1.90696 1.16957 1.85046 1.49921 1.19354 0.92651 0.92434 1.06635 1.20430 0.92039 0.97251 1.13836 1.20505 0.97611 0.92906 0.98941 1.21204 0.95620 0.95638 1.12067 1.17708 0.90935 0.93521 0.90066 1.19542 1.09060 0.88828 1.29243 0.88819 1.26196 0.96580 0.94383 0.96682 1.69668 1.36663 1.00624 1.35849 0.86275 0.80062 0.79161 0.80177 1.19603 1.21920 1.16701 1.21237 0.99008 0.90282 1.05037 0.90376 0.92049 0.88826 0.85387 0.85516 0.85202 0.84598 0.88021 0.87998 0.75135 0.88415 0.88213 0.87793 0.90274 0.86589 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.11 8.76 36.00 0.32 -0.80 16 2 C -0.02 -0.19 5.92 -104.15 -0.62 -0.81 16 3 C -0.14 -1.01 9.66 -39.65 -0.38 -1.39 16 4 C -0.08 -0.53 10.04 -39.46 -0.40 -0.92 16 5 C -0.14 -0.94 10.03 -39.64 -0.40 -1.33 16 6 C -0.07 -0.52 9.47 -39.11 -0.37 -0.89 16 7 C -0.17 -1.66 5.87 -105.07 -0.62 -2.28 16 8 C 0.39 4.39 7.12 -30.69 -0.22 4.17 16 9 O -0.44 -5.75 12.64 5.58 0.07 -5.68 16 10 C 0.08 0.92 4.85 -5.20 -0.03 0.89 16 11 N -0.73 -11.32 5.48 -62.42 -0.34 -11.67 16 12 C 0.57 11.15 7.77 -12.31 -0.10 11.05 16 13 O -0.55 -11.98 16.33 5.32 0.09 -11.89 16 14 C -0.11 -2.33 5.87 -105.04 -0.62 -2.95 16 15 C -0.22 -4.31 9.55 -38.92 -0.37 -4.69 16 16 C -0.08 -1.70 10.01 -39.73 -0.40 -2.10 16 17 C -0.23 -5.33 7.11 -38.81 -0.28 -5.60 16 18 C 0.08 2.05 5.17 -106.87 -0.55 1.49 16 19 C -0.44 -11.81 9.60 -37.73 -0.36 -12.17 16 20 H 0.09 2.64 8.06 -52.49 -0.42 2.22 16 21 C 0.08 2.10 5.44 -17.34 -0.09 2.00 16 22 N -0.80 -21.21 13.93 55.55 0.77 -20.44 16 23 Si 0.92 20.55 24.41 -169.99 -4.15 16.40 16 24 H -0.27 -5.81 6.58 56.52 0.37 -5.44 16 25 H -0.29 -6.31 7.11 56.52 0.40 -5.91 16 26 H -0.24 -5.60 6.80 56.52 0.38 -5.21 16 27 C -0.14 -3.27 9.34 -38.44 -0.36 -3.63 16 28 H 0.08 0.69 8.14 -51.93 -0.42 0.27 16 29 H 0.06 0.42 8.05 -51.93 -0.42 0.00 16 30 H 0.09 0.98 5.81 -51.93 -0.30 0.67 16 31 H 0.13 0.68 8.06 -52.49 -0.42 0.25 16 32 H 0.13 0.50 8.06 -52.49 -0.42 0.08 16 33 H 0.13 0.59 8.06 -52.49 -0.42 0.17 16 34 H 0.14 0.87 6.99 -52.49 -0.37 0.51 16 35 H 0.10 1.13 7.90 -51.93 -0.41 0.72 16 36 H 0.10 1.14 8.14 -51.93 -0.42 0.72 16 37 H 0.41 6.10 5.45 -40.82 -0.22 5.87 16 38 H 0.10 1.66 6.38 -52.49 -0.33 1.32 16 39 H 0.10 1.78 8.06 -52.49 -0.42 1.35 16 40 H 0.10 2.43 4.21 -52.49 -0.22 2.20 16 41 H 0.29 6.83 8.30 -40.82 -0.34 6.49 16 42 H 0.12 2.83 7.64 -52.49 -0.40 2.43 16 LS Contribution 352.16 15.07 5.31 5.31 Total: -1.00 -30.29 352.16 -8.90 -39.19 By element: Atomic # 1 Polarization: 13.54 SS G_CDS: -4.82 Total: 8.72 kcal Atomic # 6 Polarization: -14.11 SS G_CDS: -5.83 Total: -19.94 kcal Atomic # 7 Polarization: -32.54 SS G_CDS: 0.43 Total: -32.11 kcal Atomic # 8 Polarization: -17.73 SS G_CDS: 0.16 Total: -17.57 kcal Atomic # 14 Polarization: 20.55 SS G_CDS: -4.15 Total: 16.40 kcal Total LS contribution 5.31 Total: 5.31 kcal Total: -30.29 -8.90 -39.19 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001413366301.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.703 kcal (2) G-P(sol) polarization free energy of solvation -30.288 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.586 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.904 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.192 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.490 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds