Wall clock time and date at job start Tue Mar 31 2020 14:08:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.37915 * 120.08804 * 2 1 4 4 C 1.38375 * 120.17618 * 179.97438 * 3 2 1 5 5 C 1.38434 * 120.34621 * 0.02562 * 4 3 2 6 6 C 1.37868 * 120.17066 * 359.71495 * 5 4 3 7 7 C 1.39829 * 120.09014 * 179.97438 * 2 1 3 8 8 C 1.47164 * 120.17092 * 0.02814 * 7 2 1 9 9 O 1.21255 * 120.00380 * 354.12102 * 8 7 2 10 10 C 1.50701 * 120.00374 * 174.12093 * 8 7 2 11 11 N 1.46492 * 109.47559 * 179.97438 * 10 8 7 12 12 C 1.34778 * 120.00149 * 179.97438 * 11 10 8 13 13 O 1.21548 * 120.00201 * 0.02562 * 12 11 10 14 14 C 1.47884 * 119.99784 * 180.02562 * 12 11 10 15 15 C 1.39915 * 120.03195 * 359.97438 * 14 12 11 16 16 C 1.38325 * 120.36662 * 180.02562 * 15 14 12 17 17 C 1.37757 * 120.40911 * 0.02562 * 16 15 14 18 18 C 1.40751 * 120.03725 * 359.97438 * 17 16 15 19 19 C 1.41443 * 120.17552 * 180.02562 * 18 17 16 20 20 H 1.07998 * 120.00011 * 151.92859 * 19 18 17 21 21 C 1.39941 * 119.99978 * 331.93513 * 19 18 17 22 22 N 1.30821 * 119.99796 * 164.22816 * 21 19 18 23 23 Si 1.86795 * 119.99766 * 344.22916 * 21 19 18 24 24 H 1.48502 * 109.47574 * 92.45809 * 23 21 19 25 25 H 1.48501 * 109.47102 * 212.45619 * 23 21 19 26 26 H 1.48501 * 109.47597 * 332.45507 * 23 21 19 27 27 C 1.38998 * 120.02266 * 180.02562 * 14 12 11 28 28 H 1.08998 * 109.47024 * 263.99401 * 1 2 3 29 29 H 1.09003 * 109.47121 * 23.99287 * 1 2 3 30 30 H 1.09002 * 109.47093 * 143.99320 * 1 2 3 31 31 H 1.08001 * 119.91035 * 0.02562 * 3 2 1 32 32 H 1.07989 * 119.83220 * 179.97438 * 4 3 2 33 33 H 1.07993 * 119.91195 * 179.97438 * 5 4 3 34 34 H 1.07999 * 120.08568 * 180.27831 * 6 5 4 35 35 H 1.09000 * 109.47132 * 59.99716 * 10 8 7 36 36 H 1.09003 * 109.46680 * 300.00348 * 10 8 7 37 37 H 0.97002 * 119.99892 * 359.97438 * 11 10 8 38 38 H 1.08001 * 119.81523 * 0.05060 * 15 14 12 39 39 H 1.07997 * 119.79765 * 179.97438 * 16 15 14 40 40 H 1.08002 * 119.98183 * 180.02562 * 17 16 15 41 41 H 0.97002 * 119.99910 * 179.97438 * 22 21 19 42 42 H 1.07998 * 120.20503 * 0.25113 * 27 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1984 1.1933 0.0000 4 6 3.5821 1.1954 0.0005 5 6 4.2834 0.0018 0.0005 6 6 3.6067 -1.1993 0.0059 7 6 2.2080 -1.2099 0.0005 8 6 1.4780 -2.4877 0.0005 9 8 0.2702 -2.4960 0.1075 10 6 2.2315 -3.7860 -0.1326 11 7 1.2859 -4.9045 -0.1048 12 6 1.7362 -6.1705 -0.2096 13 8 2.9270 -6.3842 -0.3269 14 6 0.7815 -7.2995 -0.1821 15 6 -0.5893 -7.0543 -0.0466 16 6 -1.4883 -8.1052 -0.0195 17 6 -1.0448 -9.4052 -0.1250 18 6 0.3305 -9.6715 -0.2619 19 6 0.7890 -11.0051 -0.3710 20 1 1.7020 -11.2201 -0.9063 21 6 0.0595 -12.0459 0.2146 22 7 0.2942 -13.2851 -0.1327 23 14 -1.2491 -11.6656 1.4922 24 1 -2.5670 -11.5211 0.8231 25 1 -1.3139 -12.7731 2.4792 26 1 -0.9069 -10.4002 2.1899 27 6 1.2455 -8.6054 -0.2897 28 1 -0.3633 -0.1075 1.0220 29 1 -0.3633 0.9389 -0.4179 30 1 -0.3633 -0.8313 -0.6042 31 1 1.6584 2.1286 0.0004 32 1 4.1179 2.1331 0.0001 33 1 5.3633 0.0117 0.0005 34 1 4.1551 -2.1297 0.0105 35 1 2.9346 -3.8845 0.6944 36 1 2.7771 -3.7943 -1.0762 37 1 0.3356 -4.7340 -0.0108 38 1 -0.9474 -6.0388 0.0368 39 1 -2.5444 -7.9054 0.0859 40 1 -1.7529 -10.2204 -0.1034 41 1 -0.2112 -14.0066 0.2735 42 1 2.3031 -8.7997 -0.3895 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001413366301.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:08:53 Heat of formation + Delta-G solvation = -45.056043 kcal Electronic energy + Delta-G solvation = -25182.667246 eV Core-core repulsion = 21477.502045 eV Total energy + Delta-G solvation = -3705.165202 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 323.131 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -41.65901 -40.79535 -39.34442 -38.95565 -35.79434 -35.51185 -33.64653 -32.95463 -32.39071 -31.81134 -29.34736 -27.78975 -26.99953 -25.05341 -24.20720 -22.56075 -22.37600 -21.62505 -21.09764 -19.72105 -18.28138 -17.89256 -17.53366 -17.12582 -16.93860 -16.50461 -16.48962 -16.34720 -15.73356 -15.51080 -15.37559 -15.06776 -14.59704 -14.55212 -14.48081 -14.25298 -14.06086 -13.87399 -13.60714 -13.35089 -13.05476 -12.98555 -12.89098 -12.67920 -12.67518 -12.33658 -12.00309 -11.73247 -11.57928 -11.25415 -10.92665 -10.63339 -10.35278 -9.96854 -9.70435 -9.66417 -9.60004 -8.92708 -6.57099 -0.39444 0.13424 0.40076 0.72134 1.24671 1.28301 1.41006 1.47754 1.89658 1.95523 2.10974 2.63288 2.77883 2.83979 3.43752 3.72427 3.83634 3.87260 4.05614 4.14721 4.22403 4.26384 4.32819 4.38816 4.39578 4.48497 4.55288 4.74280 4.78310 4.81157 4.85961 4.88846 5.01623 5.12288 5.19988 5.25588 5.35693 5.39982 5.50338 5.57292 5.61811 5.68988 5.81967 5.95280 6.06180 6.26948 6.30521 6.44508 6.62867 6.72257 7.11194 8.15877 Molecular weight = 323.13amu Principal moments of inertia in cm(-1) A = 0.030508 B = 0.002302 C = 0.002177 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 917.584685 B =12162.532585 C =12858.472339 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C -0.038 4.038 3 C -0.143 4.143 4 C -0.078 4.078 5 C -0.143 4.143 6 C -0.072 4.072 7 C -0.192 4.192 8 C 0.399 3.601 9 O -0.464 6.464 10 C 0.071 3.929 11 N -0.713 5.713 12 C 0.567 3.433 13 O -0.576 6.576 14 C -0.113 4.113 15 C -0.188 4.188 16 C -0.081 4.081 17 C -0.230 4.230 18 C 0.065 3.935 19 C -0.482 4.482 20 H 0.053 0.947 21 C 0.043 3.957 22 N -0.847 5.847 23 Si 0.971 3.029 24 H -0.248 1.248 25 H -0.279 1.279 26 H -0.251 1.251 27 C -0.163 4.163 28 H 0.072 0.928 29 H 0.078 0.922 30 H 0.074 0.926 31 H 0.148 0.852 32 H 0.156 0.844 33 H 0.153 0.847 34 H 0.146 0.854 35 H 0.114 0.886 36 H 0.113 0.887 37 H 0.415 0.585 38 H 0.140 0.860 39 H 0.145 0.855 40 H 0.109 0.891 41 H 0.296 0.704 42 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.160 29.771 2.399 29.890 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C -0.038 4.038 3 C -0.161 4.161 4 C -0.096 4.096 5 C -0.161 4.161 6 C -0.091 4.091 7 C -0.193 4.193 8 C 0.279 3.721 9 O -0.341 6.341 10 C -0.053 4.053 11 N -0.368 5.368 12 C 0.357 3.643 13 O -0.457 6.457 14 C -0.116 4.116 15 C -0.207 4.207 16 C -0.099 4.099 17 C -0.249 4.249 18 C 0.062 3.938 19 C -0.511 4.511 20 H 0.071 0.929 21 C -0.172 4.172 22 N -0.473 5.473 23 Si 0.794 3.206 24 H -0.173 1.173 25 H -0.206 1.206 26 H -0.175 1.175 27 C -0.183 4.183 28 H 0.091 0.909 29 H 0.097 0.903 30 H 0.093 0.907 31 H 0.166 0.834 32 H 0.173 0.827 33 H 0.171 0.829 34 H 0.164 0.836 35 H 0.132 0.868 36 H 0.131 0.869 37 H 0.255 0.745 38 H 0.157 0.843 39 H 0.163 0.837 40 H 0.126 0.874 41 H 0.106 0.894 42 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges 1.373 29.346 2.353 29.472 hybrid contribution -0.330 -0.763 0.208 0.857 sum 1.043 28.583 2.561 28.716 Atomic orbital electron populations 1.21081 0.90306 1.03504 1.03061 1.20419 0.96972 0.92432 0.93980 1.21366 0.95035 0.97652 1.02044 1.21839 0.94067 0.99625 0.94034 1.21503 1.01748 0.91797 1.01028 1.21751 0.92220 1.00389 0.94697 1.20118 0.95074 0.93153 1.10979 1.22536 0.88565 0.90091 0.70876 1.90481 1.16802 1.89181 1.37663 1.21760 0.93315 0.84339 1.05881 1.45595 1.12156 1.04338 1.74681 1.18494 0.87575 0.83263 0.74983 1.90687 1.17923 1.85594 1.51472 1.19639 0.94231 0.92176 1.05530 1.20957 0.90910 0.99284 1.09581 1.20999 1.00095 0.91554 0.97245 1.21406 0.94569 0.97392 1.11554 1.17804 0.92333 0.92906 0.90739 1.19484 1.08930 0.90738 1.31956 0.92887 1.26924 0.98458 0.93894 0.97911 1.69698 1.38571 1.01485 1.37553 0.85441 0.78352 0.78828 0.77944 1.17320 1.20553 1.17517 1.21180 0.98165 0.91721 1.07260 0.90932 0.90278 0.90695 0.83419 0.82677 0.82911 0.83607 0.86801 0.86934 0.74517 0.84267 0.83742 0.87394 0.89368 0.88657 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.01 8.76 71.24 0.62 -1.39 16 2 C -0.04 -0.62 5.92 -19.56 -0.12 -0.74 16 3 C -0.14 -1.68 9.66 22.23 0.21 -1.46 16 4 C -0.08 -0.72 10.04 22.35 0.22 -0.49 16 5 C -0.14 -1.47 10.03 22.23 0.22 -1.24 16 6 C -0.07 -0.99 9.47 22.58 0.21 -0.77 16 7 C -0.19 -3.39 5.87 -20.15 -0.12 -3.51 16 8 C 0.40 8.37 7.12 28.03 0.20 8.57 16 9 O -0.46 -11.46 12.64 -2.95 -0.04 -11.50 16 10 C 0.07 1.59 4.85 85.63 0.42 2.00 16 11 N -0.71 -20.69 5.48 -469.68 -2.57 -23.26 16 12 C 0.57 21.78 7.77 86.80 0.67 22.46 16 13 O -0.58 -25.32 16.33 -3.87 -0.06 -25.38 16 14 C -0.11 -4.78 5.87 -20.13 -0.12 -4.90 16 15 C -0.19 -6.85 9.55 22.70 0.22 -6.64 16 16 C -0.08 -3.08 10.01 22.18 0.22 -2.85 16 17 C -0.23 -10.53 7.11 22.77 0.16 -10.37 16 18 C 0.06 3.38 5.17 -21.32 -0.11 3.27 16 19 C -0.48 -27.75 9.60 23.47 0.23 -27.52 16 20 H 0.05 3.33 8.06 -2.91 -0.02 3.30 16 21 C 0.04 2.31 5.44 85.26 0.46 2.77 16 22 N -0.85 -46.82 13.93 21.82 0.30 -46.51 16 23 Si 0.97 42.19 24.41 68.60 1.67 43.86 16 24 H -0.25 -9.84 6.58 99.48 0.65 -9.19 16 25 H -0.28 -11.40 7.11 99.48 0.71 -10.70 16 26 H -0.25 -11.11 6.80 99.48 0.68 -10.43 16 27 C -0.16 -8.15 9.34 23.01 0.21 -7.94 16 28 H 0.07 1.22 8.14 -2.39 -0.02 1.20 16 29 H 0.08 0.94 8.05 -2.39 -0.02 0.92 16 30 H 0.07 1.51 5.81 -2.39 -0.01 1.50 16 31 H 0.15 1.07 8.06 -2.91 -0.02 1.04 16 32 H 0.16 0.52 8.06 -2.92 -0.02 0.50 16 33 H 0.15 0.83 8.06 -2.91 -0.02 0.80 16 34 H 0.15 1.57 6.99 -2.91 -0.02 1.55 16 35 H 0.11 2.33 7.90 -2.39 -0.02 2.31 16 36 H 0.11 2.34 8.14 -2.39 -0.02 2.32 16 37 H 0.42 11.12 5.45 -92.71 -0.51 10.61 16 38 H 0.14 3.97 6.38 -2.91 -0.02 3.95 16 39 H 0.14 4.27 8.06 -2.91 -0.02 4.25 16 40 H 0.11 4.83 4.21 -2.91 -0.01 4.82 16 41 H 0.30 14.57 8.30 -92.71 -0.77 13.80 16 42 H 0.10 5.03 7.64 -2.91 -0.02 5.01 16 Total: -1.00 -69.58 352.16 3.62 -65.96 By element: Atomic # 1 Polarization: 27.10 SS G_CDS: 0.48 Total: 27.58 kcal Atomic # 6 Polarization: -34.58 SS G_CDS: 3.83 Total: -30.75 kcal Atomic # 7 Polarization: -67.50 SS G_CDS: -2.27 Total: -69.77 kcal Atomic # 8 Polarization: -36.78 SS G_CDS: -0.10 Total: -36.88 kcal Atomic # 14 Polarization: 42.19 SS G_CDS: 1.67 Total: 43.86 kcal Total: -69.58 3.62 -65.96 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001413366301.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.905 kcal (2) G-P(sol) polarization free energy of solvation -69.579 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.675 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.619 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.961 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.056 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds