Wall clock time and date at job start Tue Mar 31 2020 13:28:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30624 * 1 3 3 Si 1.86794 * 120.00463 * 2 1 4 4 H 1.48504 * 109.47066 * 269.52447 * 3 2 1 5 5 H 1.48499 * 109.47325 * 29.52226 * 3 2 1 6 6 H 1.48494 * 109.47312 * 149.52236 * 3 2 1 7 7 C 1.40279 * 119.99544 * 179.97438 * 2 1 3 8 8 H 1.08003 * 120.00156 * 355.02469 * 7 2 1 9 9 C 1.40891 * 119.99800 * 175.02319 * 7 2 1 10 10 C 1.40705 * 120.32886 * 319.95270 * 9 7 2 11 11 C 1.37596 * 119.88130 * 179.97438 * 10 9 7 12 12 C 1.38821 * 120.57324 * 359.97438 * 11 10 9 13 13 C 1.38226 * 120.67246 * 359.73171 * 12 11 10 14 14 C 1.39223 * 120.09160 * 0.54740 * 13 12 11 15 15 C 1.47431 * 120.28112 * 179.72476 * 14 13 12 16 16 O 1.21609 * 119.99950 * 213.87472 * 15 14 13 17 17 N 1.34777 * 120.00546 * 33.87233 * 15 14 13 18 18 C 1.47575 * 134.49876 * 183.88861 * 17 15 14 19 19 C 1.53948 * 86.11940 * 204.64447 * 18 17 15 20 20 O 1.42904 * 113.74076 * 221.94112 * 19 18 17 21 21 C 1.35901 * 116.99731 * 202.70943 * 20 19 18 22 22 C 1.38730 * 120.05008 * 182.23546 * 21 20 19 23 23 C 1.38147 * 119.93836 * 179.74732 * 22 21 20 24 24 C 1.38264 * 120.05618 * 0.50450 * 23 22 21 25 25 C 1.38261 * 120.11378 * 359.77592 * 24 23 22 26 26 C 1.38142 * 120.05481 * 359.96882 * 25 24 23 27 27 C 1.47584 * 134.48639 * 3.89418 * 17 15 14 28 28 H 0.97010 * 119.99543 * 0.02562 * 1 2 3 29 29 H 1.08007 * 120.05872 * 359.95026 * 10 9 7 30 30 H 1.07996 * 119.71260 * 179.97438 * 11 10 9 31 31 H 1.07996 * 119.66727 * 180.02562 * 12 11 10 32 32 H 1.08008 * 119.95610 * 180.28208 * 13 12 11 33 33 H 1.08996 * 113.76870 * 90.34265 * 18 17 15 34 34 H 1.09007 * 113.76948 * 318.94567 * 18 17 15 35 35 H 1.08994 * 113.74495 * 90.74048 * 19 18 17 36 36 H 1.08001 * 120.03256 * 0.02562 * 22 21 20 37 37 H 1.08002 * 119.96995 * 180.28142 * 23 22 21 38 38 H 1.08006 * 119.94490 * 179.74223 * 24 23 22 39 39 H 1.07999 * 119.97423 * 179.97438 * 25 24 23 40 40 H 1.08002 * 120.03455 * 179.97438 * 26 25 24 41 41 H 1.09002 * 113.77270 * 41.05590 * 27 17 15 42 42 H 1.09000 * 113.76813 * 269.65629 * 27 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3062 0.0000 0.0000 3 14 2.2403 1.6176 0.0000 4 1 2.4979 2.0405 -1.4001 5 1 1.4329 2.6555 0.6899 6 1 3.5328 1.4429 0.7101 7 6 2.0075 -1.2149 0.0005 8 1 1.4705 -2.1484 0.0821 9 6 3.4125 -1.2173 -0.1053 10 6 4.0608 -0.3240 -0.9779 11 6 5.4334 -0.3339 -1.0736 12 6 6.1877 -1.2188 -0.3153 13 6 5.5754 -2.1022 0.5538 14 6 4.1880 -2.1201 0.6683 15 6 3.5302 -3.0648 1.5894 16 8 2.4473 -3.5385 1.3034 17 7 4.1289 -3.4035 2.7484 18 6 3.8104 -4.3426 3.8413 19 6 4.6743 -3.4331 4.7339 20 8 5.5304 -4.1487 5.6267 21 6 5.9536 -3.4890 6.7370 22 6 6.8238 -4.1073 7.6230 23 6 7.2566 -3.4327 8.7482 24 6 6.8152 -2.1462 8.9969 25 6 5.9434 -1.5300 8.1184 26 6 5.5117 -2.1983 6.9891 27 6 5.3666 -2.9840 3.4342 28 1 -0.4850 0.8402 -0.0004 29 1 3.4820 0.3681 -1.5718 30 1 5.9281 0.3527 -1.7445 31 1 7.2642 -1.2137 -0.4016 32 1 6.1738 -2.7826 1.1416 33 1 4.2256 -5.3402 3.6983 34 1 2.7558 -4.3549 4.1167 35 1 4.1119 -2.6410 5.2279 36 1 7.1660 -5.1135 7.4311 37 1 7.9376 -3.9119 9.4360 38 1 7.1515 -1.6220 9.8793 39 1 5.5997 -0.5252 8.3151 40 1 4.8304 -1.7168 6.3033 41 1 5.5545 -1.9114 3.3846 42 1 6.2389 -3.5825 3.1716 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001433664421.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:28:32 Heat of formation + Delta-G solvation = 23.364189 kcal Electronic energy + Delta-G solvation = -26153.269215 eV Core-core repulsion = 22451.070937 eV Total energy + Delta-G solvation = -3702.198278 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 323.131 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -40.72709 -39.43207 -38.12633 -37.02323 -36.08441 -33.67022 -31.25543 -30.71514 -30.55810 -29.96977 -28.25395 -26.19555 -25.34219 -23.75824 -22.68567 -22.17503 -21.18561 -20.51762 -18.87778 -18.53326 -17.50301 -16.85740 -16.35050 -15.97328 -15.87290 -15.32917 -14.89644 -14.79420 -14.49746 -14.18834 -13.86779 -13.65566 -13.59120 -13.05566 -12.99858 -12.70139 -12.66212 -12.55156 -12.18221 -11.96524 -11.82190 -11.73627 -11.57258 -11.02367 -10.87674 -10.79614 -10.59416 -10.51640 -10.15343 -9.84223 -9.31641 -9.20901 -8.77243 -8.37506 -8.28239 -7.89298 -7.66956 -6.92637 -4.58205 1.13660 1.25280 2.06003 2.53029 2.80253 3.04107 3.11590 3.21956 3.39763 3.58343 3.79138 3.91981 4.25164 4.47931 4.53104 4.65186 4.78795 4.90217 5.00734 5.17986 5.20929 5.26217 5.33483 5.46298 5.53162 5.57363 5.73492 5.76198 5.79499 5.88300 5.93882 6.11620 6.15123 6.21641 6.33386 6.41860 6.49701 6.58841 6.71565 7.05578 7.16546 7.26596 7.34019 7.51201 7.71001 7.93077 8.16991 8.43839 8.54550 8.78893 9.09359 10.06089 Molecular weight = 323.13amu Principal moments of inertia in cm(-1) A = 0.014964 B = 0.003238 C = 0.003181 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1870.746776 B = 8644.438313 C = 8800.615665 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.800 5.800 2 C 0.080 3.920 3 Si 0.905 3.095 4 H -0.267 1.267 5 H -0.289 1.289 6 H -0.243 1.243 7 C -0.428 4.428 8 H 0.120 0.880 9 C 0.126 3.874 10 C -0.223 4.223 11 C -0.066 4.066 12 C -0.247 4.247 13 C -0.044 4.044 14 C -0.238 4.238 15 C 0.603 3.397 16 O -0.525 6.525 17 N -0.648 5.648 18 C 0.117 3.883 19 C 0.039 3.961 20 O -0.300 6.300 21 C 0.133 3.867 22 C -0.155 4.155 23 C -0.083 4.083 24 C -0.163 4.163 25 C -0.078 4.078 26 C -0.210 4.210 27 C 0.094 3.906 28 H 0.287 0.713 29 H 0.107 0.893 30 H 0.098 0.902 31 H 0.098 0.902 32 H 0.098 0.902 33 H 0.089 0.911 34 H 0.089 0.911 35 H 0.113 0.887 36 H 0.130 0.870 37 H 0.127 0.873 38 H 0.121 0.879 39 H 0.124 0.876 40 H 0.132 0.868 41 H 0.088 0.912 42 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.731 -2.324 14.657 19.552 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.424 5.424 2 C -0.139 4.139 3 Si 0.731 3.269 4 H -0.192 1.192 5 H -0.216 1.216 6 H -0.166 1.166 7 C -0.456 4.456 8 H 0.137 0.863 9 C 0.121 3.879 10 C -0.242 4.242 11 C -0.085 4.085 12 C -0.266 4.266 13 C -0.063 4.063 14 C -0.242 4.242 15 C 0.398 3.602 16 O -0.401 6.401 17 N -0.389 5.389 18 C -0.006 4.006 19 C -0.018 4.018 20 O -0.212 6.212 21 C 0.088 3.912 22 C -0.174 4.174 23 C -0.101 4.101 24 C -0.181 4.181 25 C -0.097 4.097 26 C -0.228 4.228 27 C -0.030 4.030 28 H 0.097 0.903 29 H 0.124 0.876 30 H 0.116 0.884 31 H 0.117 0.883 32 H 0.116 0.884 33 H 0.107 0.893 34 H 0.107 0.893 35 H 0.131 0.869 36 H 0.148 0.852 37 H 0.145 0.855 38 H 0.139 0.861 39 H 0.142 0.858 40 H 0.150 0.850 41 H 0.107 0.893 42 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges 11.749 -2.634 14.220 18.633 hybrid contribution 0.272 1.026 -0.092 1.065 sum 12.021 -1.608 14.128 18.619 Atomic orbital electron populations 1.69551 1.08067 1.30236 1.34513 1.26293 0.94909 1.01383 0.91332 0.86417 0.80951 0.79888 0.79644 1.19246 1.21597 1.16642 1.20037 0.90180 0.96366 1.39028 0.86287 1.17534 0.93484 0.89052 0.87814 1.21179 0.94182 1.05289 1.03544 1.20771 0.93928 0.96717 0.97092 1.20335 0.97801 1.03086 1.05374 1.20835 0.93080 0.96074 0.96328 1.19357 0.92633 1.07428 1.04824 1.18005 0.83848 0.80398 0.77937 1.90717 1.20822 1.54747 1.73777 1.49576 1.24801 1.43545 1.20938 1.23097 1.00099 0.94418 0.82960 1.24879 0.92236 0.96483 0.88233 1.86148 1.62963 1.40962 1.31121 1.19061 0.93992 0.91151 0.86990 1.20457 1.00404 1.01310 0.95190 1.20959 0.98486 0.94530 0.96115 1.21062 1.00542 0.95898 1.00626 1.20979 0.95916 0.99483 0.93275 1.21376 1.05109 0.95351 1.00998 1.23586 0.89845 1.01897 0.87693 0.90270 0.87553 0.88387 0.88341 0.88368 0.89309 0.89266 0.86943 0.85238 0.85526 0.86067 0.85787 0.84988 0.89321 0.89334 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.80 -21.71 13.92 55.56 0.77 -20.94 16 2 C 0.08 2.13 5.51 -17.30 -0.10 2.04 16 3 Si 0.90 20.35 24.52 -169.99 -4.17 16.18 16 4 H -0.27 -5.74 6.75 56.52 0.38 -5.36 16 5 H -0.29 -6.27 7.11 56.52 0.40 -5.87 16 6 H -0.24 -5.52 6.67 56.52 0.38 -5.15 16 7 C -0.43 -11.99 8.61 -37.81 -0.33 -12.32 16 8 H 0.12 3.72 6.13 -52.48 -0.32 3.40 16 9 C 0.13 3.21 5.00 -106.54 -0.53 2.68 16 10 C -0.22 -5.20 6.94 -38.88 -0.27 -5.47 16 11 C -0.07 -1.36 10.01 -39.60 -0.40 -1.76 16 12 C -0.25 -4.78 10.03 -39.37 -0.39 -5.17 16 13 C -0.04 -0.89 8.87 -39.22 -0.35 -1.24 16 14 C -0.24 -5.58 5.78 -104.37 -0.60 -6.18 16 15 C 0.60 13.94 7.46 -12.52 -0.09 13.85 16 16 O -0.52 -14.12 15.16 5.27 0.08 -14.04 16 17 N -0.65 -11.59 3.57 -179.89 -0.64 -12.23 16 18 C 0.12 1.67 8.67 -2.98 -0.03 1.65 16 19 C 0.04 0.48 4.05 -25.80 -0.10 0.38 16 20 O -0.30 -3.64 10.16 -19.43 -0.20 -3.84 16 21 C 0.13 1.52 6.68 -39.22 -0.26 1.26 16 22 C -0.15 -1.55 9.99 -39.43 -0.39 -1.94 16 23 C -0.08 -0.71 10.04 -39.61 -0.40 -1.10 16 24 C -0.16 -1.40 10.04 -39.56 -0.40 -1.80 16 25 C -0.08 -0.74 10.04 -39.61 -0.40 -1.14 16 26 C -0.21 -2.26 9.10 -39.43 -0.36 -2.62 16 27 C 0.09 1.29 6.44 -2.97 -0.02 1.27 16 28 H 0.29 6.98 8.29 -40.82 -0.34 6.65 16 29 H 0.11 2.44 5.07 -52.48 -0.27 2.18 16 30 H 0.10 1.70 8.06 -52.49 -0.42 1.28 16 31 H 0.10 1.62 8.06 -52.49 -0.42 1.20 16 32 H 0.10 1.68 6.33 -52.48 -0.33 1.35 16 33 H 0.09 1.14 8.14 -51.93 -0.42 0.72 16 34 H 0.09 1.28 8.14 -51.92 -0.42 0.85 16 35 H 0.11 1.32 5.64 -51.93 -0.29 1.03 16 36 H 0.13 1.12 8.06 -52.49 -0.42 0.70 16 37 H 0.13 0.76 8.06 -52.49 -0.42 0.33 16 38 H 0.12 0.78 8.06 -52.48 -0.42 0.35 16 39 H 0.12 0.94 8.06 -52.49 -0.42 0.52 16 40 H 0.13 1.36 5.71 -52.49 -0.30 1.06 16 41 H 0.09 1.22 8.09 -51.93 -0.42 0.80 16 42 H 0.09 1.10 7.86 -51.93 -0.41 0.69 16 LS Contribution 348.85 15.07 5.26 5.26 Total: -1.00 -31.28 348.85 -9.22 -40.49 By element: Atomic # 1 Polarization: 11.63 SS G_CDS: -4.90 Total: 6.73 kcal Atomic # 6 Polarization: -12.19 SS G_CDS: -5.42 Total: -17.61 kcal Atomic # 7 Polarization: -33.30 SS G_CDS: 0.13 Total: -33.17 kcal Atomic # 8 Polarization: -17.76 SS G_CDS: -0.12 Total: -17.88 kcal Atomic # 14 Polarization: 20.35 SS G_CDS: -4.17 Total: 16.18 kcal Total LS contribution 5.26 Total: 5.26 kcal Total: -31.28 -9.22 -40.49 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001433664421.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 63.859 kcal (2) G-P(sol) polarization free energy of solvation -31.278 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 32.580 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.216 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.494 kcal (6) G-S(sol) free energy of system = (1) + (5) 23.364 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds