Wall clock time and date at job start Tue Mar 31 2020 13:28:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30624 * 1 3 3 Si 1.86794 * 120.00463 * 2 1 4 4 H 1.48504 * 109.47066 * 269.52447 * 3 2 1 5 5 H 1.48499 * 109.47325 * 29.52226 * 3 2 1 6 6 H 1.48494 * 109.47312 * 149.52236 * 3 2 1 7 7 C 1.40279 * 119.99544 * 179.97438 * 2 1 3 8 8 H 1.08003 * 120.00156 * 355.02469 * 7 2 1 9 9 C 1.40891 * 119.99800 * 175.02319 * 7 2 1 10 10 C 1.40705 * 120.32886 * 319.95270 * 9 7 2 11 11 C 1.37596 * 119.88130 * 179.97438 * 10 9 7 12 12 C 1.38821 * 120.57324 * 359.97438 * 11 10 9 13 13 C 1.38226 * 120.67246 * 359.73171 * 12 11 10 14 14 C 1.39223 * 120.09160 * 0.54740 * 13 12 11 15 15 C 1.47431 * 120.28112 * 179.72476 * 14 13 12 16 16 O 1.21609 * 119.99950 * 213.87472 * 15 14 13 17 17 N 1.34777 * 120.00546 * 33.87233 * 15 14 13 18 18 C 1.47575 * 134.49876 * 183.88861 * 17 15 14 19 19 C 1.53948 * 86.11940 * 204.64447 * 18 17 15 20 20 O 1.42904 * 113.74076 * 221.94112 * 19 18 17 21 21 C 1.35901 * 116.99731 * 202.70943 * 20 19 18 22 22 C 1.38730 * 120.05008 * 182.23546 * 21 20 19 23 23 C 1.38147 * 119.93836 * 179.74732 * 22 21 20 24 24 C 1.38264 * 120.05618 * 0.50450 * 23 22 21 25 25 C 1.38261 * 120.11378 * 359.77592 * 24 23 22 26 26 C 1.38142 * 120.05481 * 359.96882 * 25 24 23 27 27 C 1.47584 * 134.48639 * 3.89418 * 17 15 14 28 28 H 0.97010 * 119.99543 * 0.02562 * 1 2 3 29 29 H 1.08007 * 120.05872 * 359.95026 * 10 9 7 30 30 H 1.07996 * 119.71260 * 179.97438 * 11 10 9 31 31 H 1.07996 * 119.66727 * 180.02562 * 12 11 10 32 32 H 1.08008 * 119.95610 * 180.28208 * 13 12 11 33 33 H 1.08996 * 113.76870 * 90.34265 * 18 17 15 34 34 H 1.09007 * 113.76948 * 318.94567 * 18 17 15 35 35 H 1.08994 * 113.74495 * 90.74048 * 19 18 17 36 36 H 1.08001 * 120.03256 * 0.02562 * 22 21 20 37 37 H 1.08002 * 119.96995 * 180.28142 * 23 22 21 38 38 H 1.08006 * 119.94490 * 179.74223 * 24 23 22 39 39 H 1.07999 * 119.97423 * 179.97438 * 25 24 23 40 40 H 1.08002 * 120.03455 * 179.97438 * 26 25 24 41 41 H 1.09002 * 113.77270 * 41.05590 * 27 17 15 42 42 H 1.09000 * 113.76813 * 269.65629 * 27 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3062 0.0000 0.0000 3 14 2.2403 1.6176 0.0000 4 1 2.4979 2.0405 -1.4001 5 1 1.4329 2.6555 0.6899 6 1 3.5328 1.4429 0.7101 7 6 2.0075 -1.2149 0.0005 8 1 1.4705 -2.1484 0.0821 9 6 3.4125 -1.2173 -0.1053 10 6 4.0608 -0.3240 -0.9779 11 6 5.4334 -0.3339 -1.0736 12 6 6.1877 -1.2188 -0.3153 13 6 5.5754 -2.1022 0.5538 14 6 4.1880 -2.1201 0.6683 15 6 3.5302 -3.0648 1.5894 16 8 2.4473 -3.5385 1.3034 17 7 4.1289 -3.4035 2.7484 18 6 3.8104 -4.3426 3.8413 19 6 4.6743 -3.4331 4.7339 20 8 5.5304 -4.1487 5.6267 21 6 5.9536 -3.4890 6.7370 22 6 6.8238 -4.1073 7.6230 23 6 7.2566 -3.4327 8.7482 24 6 6.8152 -2.1462 8.9969 25 6 5.9434 -1.5300 8.1184 26 6 5.5117 -2.1983 6.9891 27 6 5.3666 -2.9840 3.4342 28 1 -0.4850 0.8402 -0.0004 29 1 3.4820 0.3681 -1.5718 30 1 5.9281 0.3527 -1.7445 31 1 7.2642 -1.2137 -0.4016 32 1 6.1738 -2.7826 1.1416 33 1 4.2256 -5.3402 3.6983 34 1 2.7558 -4.3549 4.1167 35 1 4.1119 -2.6410 5.2279 36 1 7.1660 -5.1135 7.4311 37 1 7.9376 -3.9119 9.4360 38 1 7.1515 -1.6220 9.8793 39 1 5.5997 -0.5252 8.3151 40 1 4.8304 -1.7168 6.3033 41 1 5.5545 -1.9114 3.3846 42 1 6.2389 -3.5825 3.1716 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001433664421.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:28:31 Heat of formation + Delta-G solvation = 4.192372 kcal Electronic energy + Delta-G solvation = -26154.100568 eV Core-core repulsion = 22451.070937 eV Total energy + Delta-G solvation = -3703.029630 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 323.131 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -41.83752 -40.68790 -39.49124 -38.46284 -37.38991 -35.54243 -32.44340 -32.33564 -31.90380 -30.87180 -29.59860 -27.43517 -27.10031 -24.90883 -23.74617 -23.36057 -22.78026 -21.70244 -20.23381 -19.53906 -19.37163 -18.32908 -17.50729 -17.28354 -16.95444 -16.67366 -16.13068 -16.09622 -15.85174 -15.50811 -15.30544 -15.07006 -14.60778 -14.46028 -14.31499 -14.16178 -13.97937 -13.86885 -13.68470 -13.35441 -13.13134 -12.77669 -12.72209 -12.51501 -12.43202 -12.22218 -12.02960 -11.71343 -11.64636 -11.58071 -11.12571 -10.56820 -9.92039 -9.80205 -9.56889 -9.46905 -9.14984 -8.83372 -6.57973 0.32908 0.42550 0.51293 0.78909 1.23017 1.34576 1.44845 1.59353 2.01830 2.10056 2.31846 2.63613 2.84300 3.17230 3.39890 3.52409 3.71723 3.93370 4.04814 4.06900 4.21181 4.32581 4.35775 4.39210 4.41296 4.46886 4.51434 4.54819 4.62642 4.74689 4.76054 4.87376 4.92797 4.98699 5.12896 5.27740 5.39976 5.43386 5.52811 5.64535 5.65487 5.81874 5.87718 5.93166 6.20194 6.37690 6.41190 6.61154 6.70693 6.80116 7.36292 8.22799 Molecular weight = 323.13amu Principal moments of inertia in cm(-1) A = 0.014964 B = 0.003238 C = 0.003181 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1870.746776 B = 8644.438313 C = 8800.615665 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.857 5.857 2 C 0.036 3.964 3 Si 0.968 3.032 4 H -0.248 1.248 5 H -0.279 1.279 6 H -0.244 1.244 7 C -0.475 4.475 8 H 0.062 0.938 9 C 0.106 3.894 10 C -0.240 4.240 11 C -0.062 4.062 12 C -0.220 4.220 13 C -0.044 4.044 14 C -0.252 4.252 15 C 0.593 3.407 16 O -0.582 6.582 17 N -0.652 5.652 18 C 0.110 3.890 19 C 0.060 3.940 20 O -0.302 6.302 21 C 0.108 3.892 22 C -0.163 4.163 23 C -0.082 4.082 24 C -0.162 4.162 25 C -0.089 4.089 26 C -0.224 4.224 27 C 0.094 3.906 28 H 0.293 0.707 29 H 0.105 0.895 30 H 0.141 0.859 31 H 0.147 0.853 32 H 0.133 0.867 33 H 0.107 0.893 34 H 0.081 0.919 35 H 0.118 0.882 36 H 0.139 0.861 37 H 0.155 0.845 38 H 0.146 0.854 39 H 0.139 0.861 40 H 0.130 0.870 41 H 0.094 0.906 42 H 0.113 0.887 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.011 -1.166 16.185 24.243 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.485 5.485 2 C -0.177 4.177 3 Si 0.790 3.210 4 H -0.173 1.173 5 H -0.206 1.206 6 H -0.167 1.167 7 C -0.505 4.505 8 H 0.080 0.920 9 C 0.102 3.898 10 C -0.259 4.259 11 C -0.081 4.081 12 C -0.238 4.238 13 C -0.062 4.062 14 C -0.257 4.257 15 C 0.388 3.612 16 O -0.463 6.463 17 N -0.390 5.390 18 C -0.012 4.012 19 C 0.003 3.997 20 O -0.215 6.215 21 C 0.064 3.936 22 C -0.182 4.182 23 C -0.100 4.100 24 C -0.180 4.180 25 C -0.107 4.107 26 C -0.242 4.242 27 C -0.028 4.028 28 H 0.103 0.897 29 H 0.123 0.877 30 H 0.158 0.842 31 H 0.164 0.836 32 H 0.150 0.850 33 H 0.125 0.875 34 H 0.099 0.901 35 H 0.135 0.865 36 H 0.157 0.843 37 H 0.173 0.827 38 H 0.164 0.836 39 H 0.157 0.843 40 H 0.147 0.853 41 H 0.112 0.888 42 H 0.131 0.869 Dipole moment (debyes) X Y Z Total from point charges 17.090 -1.491 15.792 23.317 hybrid contribution -1.017 0.470 -0.406 1.191 sum 16.073 -1.021 15.386 22.274 Atomic orbital electron populations 1.69621 1.09534 1.31325 1.37971 1.27088 0.95610 1.04403 0.90575 0.85469 0.79349 0.75621 0.80548 1.17251 1.20586 1.16723 1.19788 0.91759 0.95053 1.43864 0.91963 1.17753 0.92727 0.90734 0.88562 1.21292 0.95887 1.05256 1.03457 1.21279 0.92620 0.97064 0.97097 1.20980 1.00183 1.00369 1.02310 1.21207 0.91546 0.96740 0.96725 1.19742 0.94435 1.06670 1.04811 1.18151 0.83425 0.80293 0.79331 1.90693 1.23205 1.56881 1.75528 1.49490 1.26127 1.43626 1.19726 1.23339 1.00494 0.95214 0.82185 1.24451 0.91629 0.95607 0.88044 1.86113 1.62951 1.40932 1.31510 1.19304 0.95323 0.91762 0.87245 1.20725 1.00128 1.01941 0.95382 1.21335 0.98313 0.94523 0.95851 1.21436 0.99574 0.96020 1.00993 1.21267 0.96075 1.00306 0.93004 1.21481 1.05536 0.95462 1.01768 1.23871 0.88945 1.02698 0.87298 0.89661 0.87698 0.84153 0.83551 0.84956 0.87470 0.90096 0.86485 0.84285 0.82742 0.83618 0.84272 0.85269 0.88781 0.86904 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.86 -50.38 13.92 21.88 0.30 -50.08 16 2 C 0.04 2.04 5.51 85.37 0.47 2.51 16 3 Si 0.97 42.94 24.52 68.60 1.68 44.62 16 4 H -0.25 -10.09 6.75 99.48 0.67 -9.42 16 5 H -0.28 -11.71 7.11 99.48 0.71 -11.01 16 6 H -0.24 -10.63 6.67 99.48 0.66 -9.97 16 7 C -0.48 -28.82 8.61 23.42 0.20 -28.61 16 8 H 0.06 4.37 6.13 -2.91 -0.02 4.36 16 9 C 0.11 5.57 5.00 -21.11 -0.11 5.46 16 10 C -0.24 -10.89 6.94 22.72 0.16 -10.73 16 11 C -0.06 -2.26 10.01 22.26 0.22 -2.04 16 12 C -0.22 -7.25 10.03 22.41 0.22 -7.03 16 13 C -0.04 -1.60 8.87 22.50 0.20 -1.40 16 14 C -0.25 -11.88 5.78 -19.70 -0.11 -12.00 16 15 C 0.59 28.59 7.46 86.66 0.65 29.24 16 16 O -0.58 -34.10 15.16 -4.06 -0.06 -34.16 16 17 N -0.65 -23.35 3.57 -845.12 -3.02 -26.37 16 18 C 0.11 3.14 8.67 86.48 0.75 3.89 16 19 C 0.06 1.43 4.05 31.25 0.13 1.55 16 20 O -0.30 -6.83 10.16 -92.44 -0.94 -7.77 16 21 C 0.11 2.28 6.68 22.51 0.15 2.43 16 22 C -0.16 -2.87 9.99 22.37 0.22 -2.64 16 23 C -0.08 -1.14 10.04 22.25 0.22 -0.92 16 24 C -0.16 -2.27 10.04 22.28 0.22 -2.04 16 25 C -0.09 -1.47 10.04 22.25 0.22 -1.25 16 26 C -0.22 -4.48 9.10 22.37 0.20 -4.28 16 27 C 0.09 2.39 6.44 86.48 0.56 2.95 16 28 H 0.29 15.34 8.29 -92.70 -0.77 14.57 16 29 H 0.11 4.72 5.07 -2.91 -0.01 4.71 16 30 H 0.14 3.95 8.06 -2.91 -0.02 3.93 16 31 H 0.15 3.59 8.06 -2.91 -0.02 3.56 16 32 H 0.13 3.91 6.33 -2.91 -0.02 3.89 16 33 H 0.11 2.68 8.14 -2.39 -0.02 2.66 16 34 H 0.08 2.44 8.14 -2.38 -0.02 2.42 16 35 H 0.12 2.69 5.64 -2.39 -0.01 2.68 16 36 H 0.14 2.08 8.06 -2.91 -0.02 2.05 16 37 H 0.15 1.22 8.06 -2.91 -0.02 1.19 16 38 H 0.15 1.29 8.06 -2.91 -0.02 1.26 16 39 H 0.14 1.79 8.06 -2.91 -0.02 1.77 16 40 H 0.13 2.54 5.71 -2.91 -0.02 2.53 16 41 H 0.09 2.33 8.09 -2.39 -0.02 2.31 16 42 H 0.11 2.37 7.86 -2.39 -0.02 2.35 16 Total: -1.00 -76.33 348.85 3.53 -72.80 By element: Atomic # 1 Polarization: 24.87 SS G_CDS: 0.97 Total: 25.85 kcal Atomic # 6 Polarization: -29.48 SS G_CDS: 4.58 Total: -24.90 kcal Atomic # 7 Polarization: -73.73 SS G_CDS: -2.71 Total: -76.44 kcal Atomic # 8 Polarization: -40.93 SS G_CDS: -1.00 Total: -41.93 kcal Atomic # 14 Polarization: 42.94 SS G_CDS: 1.68 Total: 44.62 kcal Total: -76.33 3.53 -72.80 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001433664421.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 76.995 kcal (2) G-P(sol) polarization free energy of solvation -76.329 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.666 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.526 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.803 kcal (6) G-S(sol) free energy of system = (1) + (5) 4.192 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds