Wall clock time and date at job start Tue Mar 31 2020 13:51:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 C 1.37978 * 119.87500 * 2 1 4 4 C 1.38246 * 120.34835 * 180.02562 * 3 2 1 5 5 C 1.38389 * 119.76872 * 0.14225 * 4 3 2 6 6 C 1.37698 * 119.97376 * 359.97438 * 5 4 3 7 7 C 1.38921 * 120.79539 * 359.71060 * 6 5 4 8 8 O 1.36128 * 111.24721 * 180.49228 * 7 6 5 9 9 C 1.43763 * 109.28320 * 341.37101 * 8 7 6 10 10 H 1.09003 * 110.74851 * 269.23985 * 9 8 7 11 11 C 1.50704 * 110.74681 * 146.08316 * 9 8 7 12 12 O 1.21290 * 119.99670 * 358.90474 * 11 9 8 13 13 N 1.34772 * 120.00251 * 178.91306 * 11 9 8 14 14 C 1.39940 * 120.00110 * 174.88837 * 13 11 9 15 15 C 1.39290 * 119.94766 * 145.77727 * 14 13 11 16 16 C 1.38479 * 120.43105 * 179.97438 * 15 14 13 17 17 C 1.37692 * 120.32039 * 0.02562 * 16 15 14 18 18 C 1.40736 * 119.88401 * 359.97438 * 17 16 15 19 19 C 1.41404 * 120.20957 * 180.02562 * 18 17 16 20 20 H 1.08001 * 120.00229 * 205.18076 * 19 18 17 21 21 C 1.39927 * 120.00002 * 25.17690 * 19 18 17 22 22 N 1.30833 * 120.00136 * 16.81184 * 21 19 18 23 23 Si 1.86798 * 120.00372 * 196.80365 * 21 19 18 24 24 H 1.48505 * 109.47145 * 0.02562 * 23 21 19 25 25 H 1.48499 * 109.47242 * 120.00431 * 23 21 19 26 26 H 1.48498 * 109.47493 * 240.00763 * 23 21 19 27 27 C 1.38234 * 119.94513 * 325.50478 * 14 13 11 28 28 C 1.51648 * 132.18036 * 179.51780 * 6 5 4 29 29 H 1.09000 * 109.47265 * 269.99882 * 1 2 3 30 30 H 1.08997 * 109.47049 * 30.00198 * 1 2 3 31 31 H 1.09001 * 109.47172 * 149.99716 * 1 2 3 32 32 H 1.08000 * 119.82416 * 0.03219 * 3 2 1 33 33 H 1.08006 * 120.11646 * 180.16967 * 4 3 2 34 34 H 1.07997 * 120.01500 * 179.97438 * 5 4 3 35 35 H 0.97003 * 120.00095 * 354.88794 * 13 11 9 36 36 H 1.08008 * 119.78463 * 0.02562 * 15 14 13 37 37 H 1.08006 * 119.84296 * 180.02562 * 16 15 14 38 38 H 1.08000 * 120.05778 * 180.02562 * 17 16 15 39 39 H 0.96996 * 120.00334 * 179.97438 * 22 21 19 40 40 H 1.07997 * 120.16482 * 359.97438 * 27 14 13 41 41 H 1.09006 * 110.94111 * 77.69417 * 28 6 5 42 42 H 1.08999 * 110.94478 * 314.00778 * 28 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1943 1.1964 0.0000 4 6 3.5767 1.2078 -0.0005 5 6 4.2737 0.0123 -0.0041 6 6 3.5897 -1.1828 -0.0065 7 6 2.2008 -1.2073 0.0006 8 8 1.7300 -2.4846 0.0076 9 6 2.7701 -3.3763 -0.4279 10 1 2.7308 -3.5172 -1.5081 11 6 2.6712 -4.7004 0.2849 12 8 1.8048 -4.8792 1.1147 13 7 3.5456 -5.6858 0.0006 14 6 3.5222 -6.8759 0.7364 15 6 3.8258 -8.0844 0.1139 16 6 3.8062 -9.2680 0.8326 17 6 3.4854 -9.2629 2.1716 18 6 3.1764 -8.0495 2.8140 19 6 2.8465 -8.0362 4.1890 20 1 2.2364 -7.2406 4.5903 21 6 3.3106 -9.0540 5.0296 22 7 4.2972 -9.8220 4.6441 23 14 2.5218 -9.3162 6.7025 24 1 1.4348 -8.3236 6.8982 25 1 1.9578 -10.6880 6.7743 26 1 3.5455 -9.1457 7.7647 27 6 3.2032 -6.8496 2.0812 28 6 4.0592 -2.6247 -0.0199 29 1 -0.3634 0.0000 1.0277 30 1 -0.3633 0.8899 -0.5138 31 1 -0.3633 -0.8900 -0.5139 32 1 1.6494 2.1289 0.0005 33 1 4.1109 2.1465 0.0022 34 1 5.3537 0.0166 -0.0049 35 1 4.1912 -5.5701 -0.7141 36 1 4.0790 -8.0984 -0.9360 37 1 4.0436 -10.1996 0.3404 38 1 3.4718 -10.1884 2.7281 39 1 4.6192 -10.5273 5.2270 40 1 2.9723 -5.9125 2.5659 41 1 4.3942 -2.9346 0.9701 42 1 4.8464 -2.7713 -0.7594 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001436284400.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:51:08 Heat of formation + Delta-G solvation = -19.871354 kcal Electronic energy + Delta-G solvation = -25837.880951 eV Core-core repulsion = 22133.807840 eV Total energy + Delta-G solvation = -3704.073112 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 323.131 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -41.52743 -39.55020 -37.76370 -36.95142 -34.55026 -33.77748 -33.06773 -31.28156 -30.11287 -29.85045 -27.93015 -26.94661 -25.33486 -24.51260 -22.36216 -21.57644 -21.01895 -20.85617 -19.70296 -17.93628 -17.72283 -17.04148 -16.81284 -15.91005 -15.53740 -15.18019 -14.80866 -14.60951 -14.54797 -14.00392 -13.85764 -13.62791 -13.28991 -13.20460 -12.97957 -12.93217 -12.65073 -12.43840 -12.18301 -11.96714 -11.68092 -11.66107 -11.32659 -11.19080 -11.12263 -10.96126 -10.93691 -10.46432 -10.18229 -9.69902 -9.46527 -9.10337 -9.03050 -8.88576 -8.23869 -7.47967 -6.97608 -6.73570 -4.35509 1.07876 1.18572 2.44922 2.67761 2.80145 3.09834 3.16024 3.17462 3.30012 3.44106 3.68759 3.96407 4.19622 4.36006 4.61238 4.62527 4.72840 4.77127 4.90934 5.02310 5.09746 5.26899 5.39025 5.51897 5.53391 5.54873 5.69119 5.72204 6.04659 6.16118 6.20832 6.21151 6.31484 6.35301 6.41620 6.66101 6.94134 7.00282 7.03140 7.04850 7.23279 7.50889 7.67633 7.92475 8.06931 8.10166 8.20949 8.54457 8.67139 8.91830 8.95830 10.19970 Molecular weight = 323.13amu Principal moments of inertia in cm(-1) A = 0.016842 B = 0.002815 C = 0.002610 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1662.071212 B = 9945.477372 C =10724.840575 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.110 4.110 2 C -0.102 4.102 3 C -0.088 4.088 4 C -0.147 4.147 5 C -0.074 4.074 6 C -0.169 4.169 7 C 0.108 3.892 8 O -0.270 6.270 9 C 0.066 3.934 10 H 0.111 0.889 11 C 0.508 3.492 12 O -0.491 6.491 13 N -0.661 5.661 14 C 0.151 3.849 15 C -0.260 4.260 16 C -0.092 4.092 17 C -0.170 4.170 18 C 0.120 3.880 19 C -0.457 4.457 20 H 0.079 0.921 21 C 0.076 3.924 22 N -0.795 5.795 23 Si 0.908 3.092 24 H -0.260 1.260 25 H -0.272 1.272 26 H -0.275 1.275 27 C -0.210 4.210 28 C -0.099 4.099 29 H 0.070 0.930 30 H 0.066 0.934 31 H 0.069 0.931 32 H 0.130 0.870 33 H 0.127 0.873 34 H 0.125 0.875 35 H 0.399 0.601 36 H 0.090 0.910 37 H 0.092 0.908 38 H 0.120 0.880 39 H 0.280 0.720 40 H 0.105 0.895 41 H 0.100 0.900 42 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.048 16.876 -10.831 20.080 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C -0.103 4.103 3 C -0.106 4.106 4 C -0.165 4.165 5 C -0.092 4.092 6 C -0.170 4.170 7 C 0.062 3.938 8 O -0.182 6.182 9 C 0.006 3.994 10 H 0.128 0.872 11 C 0.292 3.708 12 O -0.363 6.363 13 N -0.306 5.306 14 C 0.060 3.940 15 C -0.281 4.281 16 C -0.111 4.111 17 C -0.190 4.190 18 C 0.117 3.883 19 C -0.487 4.487 20 H 0.097 0.903 21 C -0.142 4.142 22 N -0.420 5.420 23 Si 0.732 3.268 24 H -0.183 1.183 25 H -0.197 1.197 26 H -0.200 1.200 27 C -0.231 4.231 28 C -0.136 4.136 29 H 0.089 0.911 30 H 0.085 0.915 31 H 0.088 0.912 32 H 0.148 0.852 33 H 0.145 0.855 34 H 0.143 0.857 35 H 0.233 0.767 36 H 0.108 0.892 37 H 0.111 0.889 38 H 0.138 0.862 39 H 0.090 0.910 40 H 0.123 0.877 41 H 0.118 0.882 42 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges 0.319 16.503 -10.065 19.333 hybrid contribution 0.347 -0.183 0.322 0.507 sum 0.666 16.320 -9.743 19.019 Atomic orbital electron populations 1.20699 0.90535 1.02796 1.02670 1.19140 0.96501 0.89385 1.05274 1.20776 0.94221 0.96455 0.99169 1.20997 0.94093 0.97697 1.03755 1.20276 0.99827 0.90422 0.98661 1.20713 0.93641 0.95227 1.07410 1.19454 0.91875 0.85492 0.96936 1.86952 1.36335 1.12861 1.82070 1.23185 0.86814 0.89767 0.99631 0.87185 1.19924 0.82366 0.84557 0.83979 1.90814 1.33110 1.80406 1.31948 1.43259 1.35301 1.15312 1.36764 1.17387 1.02763 0.83230 0.90664 1.20022 1.18608 0.91591 0.97888 1.20468 1.00359 0.95457 0.94811 1.21368 1.06003 0.98740 0.92905 1.17488 0.87803 0.90075 0.92937 1.19629 1.28283 1.07878 0.92882 0.90280 1.25906 0.93261 0.94404 1.00601 1.69829 1.19095 1.15585 1.37506 0.86263 0.80186 0.79247 0.81080 1.18312 1.19679 1.19996 1.20969 1.12115 0.98206 0.91851 1.21748 0.96923 0.90333 1.04589 0.91097 0.91544 0.91206 0.85205 0.85465 0.85683 0.76666 0.89188 0.88941 0.86244 0.90959 0.87720 0.88219 0.88022 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.12 9.98 36.01 0.36 -0.76 16 2 C -0.10 -1.21 5.90 -104.34 -0.62 -1.82 16 3 C -0.09 -0.84 9.66 -39.67 -0.38 -1.22 16 4 C -0.15 -1.32 10.07 -39.52 -0.40 -1.72 16 5 C -0.07 -0.73 10.03 -39.72 -0.40 -1.13 16 6 C -0.17 -2.04 6.27 -104.10 -0.65 -2.69 16 7 C 0.11 1.49 6.74 -38.95 -0.26 1.23 16 8 O -0.27 -4.34 10.26 -39.21 -0.40 -4.75 16 9 C 0.07 0.90 4.04 -26.99 -0.11 0.79 16 10 H 0.11 1.14 8.14 -51.93 -0.42 0.71 16 11 C 0.51 9.18 6.87 -10.99 -0.08 9.11 16 12 O -0.49 -11.52 14.33 -13.52 -0.19 -11.71 16 13 N -0.66 -11.38 5.34 -9.91 -0.05 -11.43 16 14 C 0.15 3.37 6.25 -83.77 -0.52 2.84 16 15 C -0.26 -5.62 9.97 -39.10 -0.39 -6.01 16 16 C -0.09 -2.13 10.02 -39.69 -0.40 -2.52 16 17 C -0.17 -4.46 8.69 -38.84 -0.34 -4.80 16 18 C 0.12 3.31 5.57 -106.85 -0.59 2.71 16 19 C -0.46 -12.63 9.05 -37.75 -0.34 -12.97 16 20 H 0.08 2.17 7.90 -52.49 -0.41 1.76 16 21 C 0.08 1.94 5.15 -17.34 -0.09 1.85 16 22 N -0.79 -20.66 10.94 55.55 0.61 -20.05 16 23 Si 0.91 19.20 29.59 -169.99 -5.03 14.17 16 24 H -0.26 -5.52 7.11 56.52 0.40 -5.12 16 25 H -0.27 -5.60 7.11 56.52 0.40 -5.20 16 26 H -0.27 -5.67 7.11 56.52 0.40 -5.26 16 27 C -0.21 -5.45 8.39 -38.68 -0.32 -5.77 16 28 C -0.10 -1.12 6.64 -26.52 -0.18 -1.30 16 29 H 0.07 0.72 8.14 -51.93 -0.42 0.29 16 30 H 0.07 0.51 8.08 -51.93 -0.42 0.09 16 31 H 0.07 0.77 8.01 -51.93 -0.42 0.36 16 32 H 0.13 0.89 8.06 -52.49 -0.42 0.46 16 33 H 0.13 0.80 8.06 -52.48 -0.42 0.38 16 34 H 0.13 0.96 8.06 -52.49 -0.42 0.53 16 35 H 0.40 5.04 8.82 -40.82 -0.36 4.68 16 36 H 0.09 1.65 8.06 -52.48 -0.42 1.23 16 37 H 0.09 1.88 8.06 -52.48 -0.42 1.46 16 38 H 0.12 3.21 6.17 -52.49 -0.32 2.88 16 39 H 0.28 6.57 8.30 -40.82 -0.34 6.23 16 40 H 0.10 2.82 6.48 -52.49 -0.34 2.48 16 41 H 0.10 1.27 7.92 -51.93 -0.41 0.86 16 42 H 0.10 0.81 8.14 -51.93 -0.42 0.39 16 LS Contribution 357.45 15.07 5.39 5.39 Total: -1.00 -32.77 357.45 -10.60 -43.37 By element: Atomic # 1 Polarization: 14.41 SS G_CDS: -5.20 Total: 9.21 kcal Atomic # 6 Polarization: -18.48 SS G_CDS: -5.71 Total: -24.19 kcal Atomic # 7 Polarization: -32.04 SS G_CDS: 0.55 Total: -31.48 kcal Atomic # 8 Polarization: -15.86 SS G_CDS: -0.60 Total: -16.46 kcal Atomic # 14 Polarization: 19.20 SS G_CDS: -5.03 Total: 14.17 kcal Total LS contribution 5.39 Total: 5.39 kcal Total: -32.77 -10.60 -43.37 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001436284400.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.499 kcal (2) G-P(sol) polarization free energy of solvation -32.772 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.273 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.598 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.370 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.871 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds