Wall clock time and date at job start Tue Mar 31 2020 13:51:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.37976 * 119.88190 * 2 1 4 4 C 1.38252 * 120.34657 * 179.97438 * 3 2 1 5 5 C 1.38389 * 119.76924 * 359.87691 * 4 3 2 6 6 C 1.37698 * 119.98219 * 359.95051 * 5 4 3 7 7 C 1.38928 * 120.77960 * 0.36750 * 6 5 4 8 8 O 1.36136 * 111.22926 * 178.93594 * 7 6 5 9 9 C 1.43772 * 109.23692 * 19.03471 * 8 7 6 10 10 H 1.08998 * 110.90236 * 90.64437 * 9 8 7 11 11 C 1.50696 * 110.74403 * 213.91854 * 9 8 7 12 12 O 1.21284 * 120.00100 * 358.36814 * 11 9 8 13 13 N 1.34781 * 120.00050 * 178.37675 * 11 9 8 14 14 C 1.39932 * 120.00328 * 185.09853 * 13 11 9 15 15 C 1.39291 * 119.94780 * 145.32415 * 14 13 11 16 16 C 1.38494 * 120.42759 * 180.02562 * 15 14 13 17 17 C 1.37679 * 120.32020 * 359.76166 * 16 15 14 18 18 C 1.40741 * 119.88469 * 0.51275 * 17 16 15 19 19 C 1.41416 * 120.20805 * 179.74157 * 18 17 16 20 20 H 1.08002 * 120.00056 * 329.36551 * 19 18 17 21 21 C 1.39932 * 119.99606 * 149.36467 * 19 18 17 22 22 N 1.30823 * 120.00404 * 335.15831 * 21 19 18 23 23 Si 1.86801 * 119.99479 * 155.15600 * 21 19 18 24 24 H 1.48499 * 109.47364 * 90.00437 * 23 21 19 25 25 H 1.48505 * 109.47184 * 210.00109 * 23 21 19 26 26 H 1.48499 * 109.47301 * 329.99944 * 23 21 19 27 27 C 1.38238 * 119.94536 * 325.34486 * 14 13 11 28 28 C 1.51643 * 132.19006 * 180.39290 * 6 5 4 29 29 H 1.08997 * 109.47123 * 270.02694 * 1 2 3 30 30 H 1.09006 * 109.47041 * 30.01733 * 1 2 3 31 31 H 1.09000 * 109.47419 * 150.01760 * 1 2 3 32 32 H 1.07994 * 119.82775 * 359.97438 * 3 2 1 33 33 H 1.07998 * 120.11173 * 179.87993 * 4 3 2 34 34 H 1.08001 * 120.01230 * 179.97438 * 5 4 3 35 35 H 0.97006 * 119.99664 * 5.08896 * 13 11 9 36 36 H 1.08003 * 119.78781 * 0.02562 * 15 14 13 37 37 H 1.07999 * 119.83708 * 180.02562 * 16 15 14 38 38 H 1.08005 * 120.06063 * 180.26021 * 17 16 15 39 39 H 0.97000 * 120.00297 * 354.32388 * 22 21 19 40 40 H 1.07995 * 120.16142 * 359.95886 * 27 14 13 41 41 H 1.09008 * 110.93266 * 46.44022 * 28 6 5 42 42 H 1.08995 * 110.94104 * 282.75916 * 28 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1944 1.1963 0.0000 4 6 3.5769 1.2075 0.0005 5 6 4.2737 0.0119 0.0037 6 6 3.5897 -1.1832 0.0072 7 6 2.2007 -1.2074 0.0001 8 8 1.7300 -2.4846 -0.0182 9 6 2.7681 -3.3784 0.4184 10 1 2.7255 -3.5263 1.4974 11 6 2.6748 -4.6979 -0.3035 12 8 1.7840 -4.8897 -1.1039 13 7 3.5813 -5.6651 -0.0594 14 6 3.5594 -6.8489 -0.8052 15 6 4.7530 -7.4928 -1.1229 16 6 4.7430 -8.6646 -1.8609 17 6 3.5515 -9.2088 -2.2849 18 6 2.3379 -8.5662 -1.9764 19 6 1.1105 -9.1163 -2.4131 20 1 1.0689 -9.6821 -3.3322 21 6 -0.0500 -8.9276 -1.6544 22 7 0.0386 -8.6969 -0.3697 23 14 -1.7258 -9.0049 -2.4761 24 1 -2.2296 -10.4015 -2.4426 25 1 -2.6733 -8.1196 -1.7524 26 1 -1.6069 -8.5552 -3.8863 27 6 2.3533 -7.3772 -1.2260 28 6 4.0590 -2.6251 0.0188 29 1 -0.3633 0.0005 1.0276 30 1 -0.3633 0.8899 -0.5141 31 1 -0.3634 -0.8901 -0.5135 32 1 1.6497 2.1288 -0.0004 33 1 4.1111 2.1461 -0.0014 34 1 5.3537 0.0161 0.0037 35 1 4.2489 -5.5404 0.6332 36 1 5.6924 -7.0755 -0.7914 37 1 5.6741 -9.1561 -2.1014 38 1 3.5483 -10.1251 -2.8566 39 1 0.9011 -8.7381 0.0721 40 1 1.4273 -6.8789 -0.9799 41 1 4.8425 -2.7738 0.7620 42 1 4.3989 -2.9322 -0.9702 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001436284403.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:51:11 Heat of formation + Delta-G solvation = -24.864791 kcal Electronic energy + Delta-G solvation = -26214.356766 eV Core-core repulsion = 22510.067123 eV Total energy + Delta-G solvation = -3704.289643 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 323.131 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -41.51787 -39.59152 -37.81089 -37.03711 -34.59934 -33.77999 -33.28297 -31.29814 -30.18204 -29.33509 -28.13407 -26.92790 -25.12033 -24.52000 -22.35788 -21.66343 -21.06924 -20.88190 -19.77939 -18.27351 -17.69362 -17.04826 -16.89549 -15.96049 -15.61784 -15.07481 -14.92588 -14.50426 -14.13151 -13.97735 -13.89371 -13.73335 -13.43201 -13.27794 -13.16124 -12.81328 -12.62359 -12.40722 -12.22655 -12.12224 -11.86607 -11.64038 -11.27886 -11.15845 -11.02709 -10.94490 -10.56611 -10.41939 -10.31989 -9.85011 -9.34702 -9.03542 -8.88421 -8.87118 -8.22681 -7.55692 -7.28309 -7.01280 -4.40371 1.08156 1.18927 2.39230 2.74799 2.81543 3.05410 3.22210 3.34317 3.44579 3.45005 3.69540 4.10789 4.18718 4.35279 4.59216 4.63352 4.75559 4.78322 4.92417 5.02154 5.11314 5.27272 5.40581 5.49651 5.51183 5.52788 5.58047 5.73371 6.04386 6.08253 6.16257 6.21731 6.26860 6.32812 6.42494 6.52927 6.76725 6.85533 6.98093 7.04098 7.39810 7.51767 7.70459 7.82685 7.84642 8.05460 8.20236 8.29465 8.57881 8.78106 8.94545 10.14210 Molecular weight = 323.13amu Principal moments of inertia in cm(-1) A = 0.014677 B = 0.003442 C = 0.002883 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1907.276549 B = 8133.985997 C = 9711.246126 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.112 4.112 2 C -0.101 4.101 3 C -0.088 4.088 4 C -0.148 4.148 5 C -0.074 4.074 6 C -0.170 4.170 7 C 0.108 3.892 8 O -0.268 6.268 9 C 0.067 3.933 10 H 0.112 0.888 11 C 0.506 3.494 12 O -0.484 6.484 13 N -0.662 5.662 14 C 0.156 3.844 15 C -0.272 4.272 16 C -0.072 4.072 17 C -0.235 4.235 18 C 0.105 3.895 19 C -0.522 4.522 20 H 0.077 0.923 21 C 0.041 3.959 22 N -0.795 5.795 23 Si 1.066 2.934 24 H -0.278 1.278 25 H -0.273 1.273 26 H -0.275 1.275 27 C -0.202 4.202 28 C -0.098 4.098 29 H 0.069 0.931 30 H 0.066 0.934 31 H 0.072 0.928 32 H 0.130 0.870 33 H 0.127 0.873 34 H 0.125 0.875 35 H 0.400 0.600 36 H 0.092 0.908 37 H 0.094 0.906 38 H 0.094 0.906 39 H 0.295 0.705 40 H 0.128 0.872 41 H 0.101 0.899 42 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.619 17.016 5.239 18.995 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C -0.102 4.102 3 C -0.106 4.106 4 C -0.166 4.166 5 C -0.092 4.092 6 C -0.171 4.171 7 C 0.063 3.937 8 O -0.181 6.181 9 C 0.007 3.993 10 H 0.130 0.870 11 C 0.290 3.710 12 O -0.356 6.356 13 N -0.307 5.307 14 C 0.065 3.935 15 C -0.294 4.294 16 C -0.091 4.091 17 C -0.255 4.255 18 C 0.101 3.899 19 C -0.550 4.550 20 H 0.095 0.905 21 C -0.181 4.181 22 N -0.418 5.418 23 Si 0.889 3.111 24 H -0.204 1.204 25 H -0.198 1.198 26 H -0.200 1.200 27 C -0.223 4.223 28 C -0.136 4.136 29 H 0.088 0.912 30 H 0.085 0.915 31 H 0.091 0.909 32 H 0.148 0.852 33 H 0.145 0.855 34 H 0.143 0.857 35 H 0.234 0.766 36 H 0.110 0.890 37 H 0.112 0.888 38 H 0.112 0.888 39 H 0.109 0.891 40 H 0.146 0.854 41 H 0.119 0.881 42 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges 4.084 17.019 4.927 18.183 hybrid contribution 2.385 -0.160 0.156 2.396 sum 6.469 16.859 5.083 18.759 Atomic orbital electron populations 1.20717 0.90474 1.03204 1.02474 1.19153 0.96557 0.89362 1.05114 1.20783 0.94210 0.96471 0.99125 1.20991 0.94099 0.97668 1.03845 1.20260 0.99756 0.90426 0.98791 1.20708 0.93655 0.95192 1.07554 1.19482 0.91864 0.85581 0.96796 1.86978 1.36519 1.12701 1.81869 1.23171 0.86725 0.89701 0.99702 0.87017 1.19962 0.83026 0.84410 0.83614 1.90828 1.31861 1.79648 1.33213 1.43213 1.33396 1.16175 1.37935 1.17501 0.94687 0.85105 0.96254 1.19979 0.94242 1.02071 1.13065 1.20353 0.96535 0.94939 0.97230 1.21030 0.92660 1.01387 1.10426 1.17593 0.93019 0.89703 0.89553 1.20510 0.93377 1.31808 1.09341 0.90527 1.26964 1.05247 0.91172 0.94689 1.70425 1.31631 1.29771 1.09949 0.83647 0.73546 0.77635 0.76224 1.20368 1.19792 1.20013 1.21365 0.96105 0.97019 1.07812 1.21748 0.96972 0.90427 1.04403 0.91218 0.91500 0.90888 0.85186 0.85478 0.85743 0.76595 0.88985 0.88808 0.88756 0.89149 0.85422 0.88068 0.88408 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.22 9.98 36.01 0.36 -0.86 16 2 C -0.10 -1.24 5.90 -104.34 -0.62 -1.86 16 3 C -0.09 -0.86 9.66 -39.67 -0.38 -1.25 16 4 C -0.15 -1.35 10.07 -39.52 -0.40 -1.75 16 5 C -0.07 -0.75 10.03 -39.72 -0.40 -1.15 16 6 C -0.17 -2.10 6.27 -104.10 -0.65 -2.75 16 7 C 0.11 1.56 6.73 -38.95 -0.26 1.30 16 8 O -0.27 -4.58 10.25 -39.24 -0.40 -4.98 16 9 C 0.07 0.98 4.05 -26.99 -0.11 0.87 16 10 H 0.11 1.30 8.14 -51.93 -0.42 0.87 16 11 C 0.51 9.72 6.98 -10.99 -0.08 9.64 16 12 O -0.48 -12.07 13.96 -13.51 -0.19 -12.26 16 13 N -0.66 -11.89 5.33 -9.91 -0.05 -11.95 16 14 C 0.16 3.56 6.30 -83.77 -0.53 3.03 16 15 C -0.27 -5.78 9.97 -39.10 -0.39 -6.17 16 16 C -0.07 -1.58 10.02 -39.69 -0.40 -1.98 16 17 C -0.24 -5.84 9.79 -38.84 -0.38 -6.22 16 18 C 0.10 2.88 5.18 -106.85 -0.55 2.33 16 19 C -0.52 -14.52 8.97 -37.74 -0.34 -14.86 16 20 H 0.08 2.06 7.96 -52.49 -0.42 1.64 16 21 C 0.04 1.10 4.91 -17.35 -0.09 1.02 16 22 N -0.80 -22.25 12.49 55.55 0.69 -21.55 16 23 Si 1.07 23.22 30.00 -169.99 -5.10 18.12 16 24 H -0.28 -5.64 7.11 56.52 0.40 -5.24 16 25 H -0.27 -5.95 7.11 56.52 0.40 -5.55 16 26 H -0.28 -5.82 7.11 56.52 0.40 -5.42 16 27 C -0.20 -5.41 6.66 -38.69 -0.26 -5.67 16 28 C -0.10 -1.14 6.63 -26.52 -0.18 -1.31 16 29 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 30 H 0.07 0.58 8.08 -51.93 -0.42 0.16 16 31 H 0.07 0.94 8.00 -51.93 -0.42 0.52 16 32 H 0.13 0.93 8.06 -52.49 -0.42 0.50 16 33 H 0.13 0.82 8.06 -52.49 -0.42 0.39 16 34 H 0.12 0.95 8.06 -52.49 -0.42 0.53 16 35 H 0.40 5.29 8.82 -40.82 -0.36 4.93 16 36 H 0.09 1.65 8.06 -52.48 -0.42 1.23 16 37 H 0.09 1.76 8.06 -52.49 -0.42 1.33 16 38 H 0.09 2.22 8.06 -52.48 -0.42 1.79 16 39 H 0.30 8.43 6.87 -40.82 -0.28 8.15 16 40 H 0.13 3.74 4.96 -52.49 -0.26 3.48 16 41 H 0.10 0.82 8.14 -51.92 -0.42 0.39 16 42 H 0.10 1.23 7.92 -51.93 -0.41 0.82 16 LS Contribution 356.82 15.07 5.38 5.38 Total: -1.00 -33.62 356.82 -10.48 -44.10 By element: Atomic # 1 Polarization: 15.96 SS G_CDS: -5.17 Total: 10.80 kcal Atomic # 6 Polarization: -22.01 SS G_CDS: -5.64 Total: -27.65 kcal Atomic # 7 Polarization: -34.14 SS G_CDS: 0.64 Total: -33.50 kcal Atomic # 8 Polarization: -16.65 SS G_CDS: -0.59 Total: -17.24 kcal Atomic # 14 Polarization: 23.22 SS G_CDS: -5.10 Total: 18.12 kcal Total LS contribution 5.38 Total: 5.38 kcal Total: -33.62 -10.48 -44.10 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001436284403.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.236 kcal (2) G-P(sol) polarization free energy of solvation -33.620 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.384 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.481 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.101 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.865 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds