Wall clock time and date at job start Tue Mar 31 2020 13:51:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.37976 * 119.88190 * 2 1 4 4 C 1.38252 * 120.34657 * 179.97438 * 3 2 1 5 5 C 1.38389 * 119.76924 * 359.87691 * 4 3 2 6 6 C 1.37698 * 119.98219 * 359.95051 * 5 4 3 7 7 C 1.38928 * 120.77960 * 0.36750 * 6 5 4 8 8 O 1.36136 * 111.22926 * 178.93594 * 7 6 5 9 9 C 1.43772 * 109.23692 * 19.03471 * 8 7 6 10 10 H 1.08998 * 110.90236 * 90.64437 * 9 8 7 11 11 C 1.50696 * 110.74403 * 213.91854 * 9 8 7 12 12 O 1.21284 * 120.00100 * 358.36814 * 11 9 8 13 13 N 1.34781 * 120.00050 * 178.37675 * 11 9 8 14 14 C 1.39932 * 120.00328 * 185.09853 * 13 11 9 15 15 C 1.39291 * 119.94780 * 145.32415 * 14 13 11 16 16 C 1.38494 * 120.42759 * 180.02562 * 15 14 13 17 17 C 1.37679 * 120.32020 * 359.76166 * 16 15 14 18 18 C 1.40741 * 119.88469 * 0.51275 * 17 16 15 19 19 C 1.41416 * 120.20805 * 179.74157 * 18 17 16 20 20 H 1.08002 * 120.00056 * 329.36551 * 19 18 17 21 21 C 1.39932 * 119.99606 * 149.36467 * 19 18 17 22 22 N 1.30823 * 120.00404 * 335.15831 * 21 19 18 23 23 Si 1.86801 * 119.99479 * 155.15600 * 21 19 18 24 24 H 1.48499 * 109.47364 * 90.00437 * 23 21 19 25 25 H 1.48505 * 109.47184 * 210.00109 * 23 21 19 26 26 H 1.48499 * 109.47301 * 329.99944 * 23 21 19 27 27 C 1.38238 * 119.94536 * 325.34486 * 14 13 11 28 28 C 1.51643 * 132.19006 * 180.39290 * 6 5 4 29 29 H 1.08997 * 109.47123 * 270.02694 * 1 2 3 30 30 H 1.09006 * 109.47041 * 30.01733 * 1 2 3 31 31 H 1.09000 * 109.47419 * 150.01760 * 1 2 3 32 32 H 1.07994 * 119.82775 * 359.97438 * 3 2 1 33 33 H 1.07998 * 120.11173 * 179.87993 * 4 3 2 34 34 H 1.08001 * 120.01230 * 179.97438 * 5 4 3 35 35 H 0.97006 * 119.99664 * 5.08896 * 13 11 9 36 36 H 1.08003 * 119.78781 * 0.02562 * 15 14 13 37 37 H 1.07999 * 119.83708 * 180.02562 * 16 15 14 38 38 H 1.08005 * 120.06063 * 180.26021 * 17 16 15 39 39 H 0.97000 * 120.00297 * 354.32388 * 22 21 19 40 40 H 1.07995 * 120.16142 * 359.95886 * 27 14 13 41 41 H 1.09008 * 110.93266 * 46.44022 * 28 6 5 42 42 H 1.08995 * 110.94104 * 282.75916 * 28 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1944 1.1963 0.0000 4 6 3.5769 1.2075 0.0005 5 6 4.2737 0.0119 0.0037 6 6 3.5897 -1.1832 0.0072 7 6 2.2007 -1.2074 0.0001 8 8 1.7300 -2.4846 -0.0182 9 6 2.7681 -3.3784 0.4184 10 1 2.7255 -3.5263 1.4974 11 6 2.6748 -4.6979 -0.3035 12 8 1.7840 -4.8897 -1.1039 13 7 3.5813 -5.6651 -0.0594 14 6 3.5594 -6.8489 -0.8052 15 6 4.7530 -7.4928 -1.1229 16 6 4.7430 -8.6646 -1.8609 17 6 3.5515 -9.2088 -2.2849 18 6 2.3379 -8.5662 -1.9764 19 6 1.1105 -9.1163 -2.4131 20 1 1.0689 -9.6821 -3.3322 21 6 -0.0500 -8.9276 -1.6544 22 7 0.0386 -8.6969 -0.3697 23 14 -1.7258 -9.0049 -2.4761 24 1 -2.2296 -10.4015 -2.4426 25 1 -2.6733 -8.1196 -1.7524 26 1 -1.6069 -8.5552 -3.8863 27 6 2.3533 -7.3772 -1.2260 28 6 4.0590 -2.6251 0.0188 29 1 -0.3633 0.0005 1.0276 30 1 -0.3633 0.8899 -0.5141 31 1 -0.3634 -0.8901 -0.5135 32 1 1.6497 2.1288 -0.0004 33 1 4.1111 2.1461 -0.0014 34 1 5.3537 0.0161 0.0037 35 1 4.2489 -5.5404 0.6332 36 1 5.6924 -7.0755 -0.7914 37 1 5.6741 -9.1561 -2.1014 38 1 3.5483 -10.1251 -2.8566 39 1 0.9011 -8.7381 0.0721 40 1 1.4273 -6.8789 -0.9799 41 1 4.8425 -2.7738 0.7620 42 1 4.3989 -2.9322 -0.9702 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001436284403.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:51:10 Heat of formation + Delta-G solvation = -44.741329 kcal Electronic energy + Delta-G solvation = -26215.218677 eV Core-core repulsion = 22510.067123 eV Total energy + Delta-G solvation = -3705.151555 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 323.131 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -42.58506 -41.11394 -39.24820 -38.37224 -36.39801 -35.24597 -34.56943 -32.28295 -31.39043 -31.21800 -29.69340 -27.75483 -27.09428 -25.70342 -23.52421 -23.11016 -22.70793 -21.85620 -21.39737 -20.11548 -18.82065 -18.46505 -17.88691 -17.42868 -16.90878 -16.69368 -16.16595 -16.10323 -15.82464 -15.43044 -15.14702 -14.81165 -14.69159 -14.52945 -14.23753 -14.17467 -13.98509 -13.80200 -13.65156 -13.23943 -13.10546 -12.89134 -12.78803 -12.46000 -12.39244 -12.28515 -12.10588 -12.06069 -11.77743 -11.68188 -11.13734 -10.85828 -10.73197 -9.67827 -9.50422 -9.29246 -9.14192 -8.89887 -6.49242 0.27856 0.35046 0.63833 0.91650 1.40846 1.43522 1.51600 1.60691 1.71977 2.28742 2.41362 2.67124 2.71507 3.17764 3.30785 3.51980 3.67163 3.78746 3.88571 4.03882 4.26226 4.35203 4.37719 4.46670 4.55017 4.57871 4.64242 4.71562 4.72067 4.74769 4.93399 4.95554 5.05725 5.06338 5.23116 5.38166 5.43592 5.50844 5.52331 5.59563 5.67962 5.77580 5.83781 5.87820 6.14692 6.25070 6.33873 6.46103 6.75624 6.95013 7.10626 8.05229 Molecular weight = 323.13amu Principal moments of inertia in cm(-1) A = 0.014677 B = 0.003442 C = 0.002883 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1907.276549 B = 8133.985997 C = 9711.246126 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.110 4.110 2 C -0.120 4.120 3 C -0.088 4.088 4 C -0.139 4.139 5 C -0.075 4.075 6 C -0.178 4.178 7 C 0.063 3.937 8 O -0.311 6.311 9 C 0.072 3.928 10 H 0.143 0.857 11 C 0.503 3.497 12 O -0.552 6.552 13 N -0.644 5.644 14 C 0.155 3.845 15 C -0.248 4.248 16 C -0.069 4.069 17 C -0.251 4.251 18 C 0.072 3.928 19 C -0.567 4.567 20 H 0.071 0.929 21 C 0.003 3.997 22 N -0.822 5.822 23 Si 1.111 2.889 24 H -0.249 1.249 25 H -0.276 1.276 26 H -0.269 1.269 27 C -0.230 4.230 28 C -0.087 4.087 29 H 0.076 0.924 30 H 0.090 0.910 31 H 0.040 0.960 32 H 0.159 0.841 33 H 0.163 0.837 34 H 0.155 0.845 35 H 0.427 0.573 36 H 0.143 0.857 37 H 0.139 0.861 38 H 0.099 0.901 39 H 0.279 0.721 40 H 0.092 0.908 41 H 0.146 0.854 42 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.123 19.580 6.136 22.880 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C -0.121 4.121 3 C -0.106 4.106 4 C -0.157 4.157 5 C -0.093 4.093 6 C -0.179 4.179 7 C 0.019 3.981 8 O -0.225 6.225 9 C 0.012 3.988 10 H 0.161 0.839 11 C 0.289 3.711 12 O -0.428 6.428 13 N -0.292 5.292 14 C 0.062 3.938 15 C -0.269 4.269 16 C -0.088 4.088 17 C -0.271 4.271 18 C 0.069 3.931 19 C -0.596 4.596 20 H 0.089 0.911 21 C -0.213 4.213 22 N -0.446 5.446 23 Si 0.929 3.071 24 H -0.173 1.173 25 H -0.201 1.201 26 H -0.194 1.194 27 C -0.252 4.252 28 C -0.124 4.124 29 H 0.095 0.905 30 H 0.108 0.892 31 H 0.059 0.941 32 H 0.177 0.823 33 H 0.180 0.820 34 H 0.173 0.827 35 H 0.266 0.734 36 H 0.161 0.839 37 H 0.157 0.843 38 H 0.117 0.883 39 H 0.090 0.910 40 H 0.111 0.889 41 H 0.164 0.836 42 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges 7.656 19.590 5.863 21.834 hybrid contribution 1.555 -0.785 -0.108 1.745 sum 9.211 18.805 5.755 21.716 Atomic orbital electron populations 1.20707 0.90459 1.02717 1.02812 1.19517 0.97096 0.89854 1.05642 1.21169 0.95008 0.96440 0.97938 1.21484 0.93893 0.98873 1.01401 1.20677 1.01340 0.89690 0.97576 1.20906 0.92778 0.96238 1.07963 1.19906 0.93476 0.84984 0.99784 1.86919 1.38139 1.14472 1.82942 1.23250 0.88279 0.87039 1.00201 0.83944 1.20937 0.81549 0.85958 0.82617 1.90807 1.34523 1.81087 1.36367 1.43047 1.33800 1.14435 1.37885 1.17678 0.94056 0.86333 0.95767 1.20562 0.95306 1.00800 1.10191 1.20859 0.97106 0.94981 0.95825 1.21265 0.93081 1.01853 1.10873 1.17953 0.94159 0.90414 0.90536 1.20687 0.94822 1.34050 1.10006 0.91100 1.28295 1.08590 0.89854 0.94520 1.70529 1.30395 1.32957 1.10696 0.83113 0.69554 0.79098 0.75355 1.17273 1.20108 1.19380 1.21213 0.96606 0.97513 1.09842 1.21765 0.96102 0.89508 1.04994 0.90514 0.89166 0.94072 0.82340 0.81963 0.82739 0.73400 0.83926 0.84337 0.88310 0.90975 0.88943 0.83632 0.89636 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -2.47 9.98 71.24 0.71 -1.76 16 2 C -0.12 -2.90 5.90 -19.68 -0.12 -3.02 16 3 C -0.09 -1.48 9.66 22.21 0.21 -1.26 16 4 C -0.14 -1.96 10.07 22.31 0.22 -1.74 16 5 C -0.08 -1.22 10.03 22.18 0.22 -1.00 16 6 C -0.18 -4.03 6.27 -19.53 -0.12 -4.15 16 7 C 0.06 1.82 6.73 22.68 0.15 1.97 16 8 O -0.31 -11.16 10.25 -76.87 -0.79 -11.95 16 9 C 0.07 2.07 4.05 30.43 0.12 2.19 16 10 H 0.14 3.12 8.14 -2.39 -0.02 3.11 16 11 C 0.50 19.81 6.98 87.66 0.61 20.43 16 12 O -0.55 -29.54 13.96 15.18 0.21 -29.33 16 13 N -0.64 -22.56 5.33 -303.66 -1.62 -24.17 16 14 C 0.15 7.00 6.30 38.10 0.24 7.24 16 15 C -0.25 -9.69 9.97 22.58 0.23 -9.46 16 16 C -0.07 -2.85 10.02 22.20 0.22 -2.63 16 17 C -0.25 -12.55 9.79 22.75 0.22 -12.33 16 18 C 0.07 4.18 5.18 -21.31 -0.11 4.07 16 19 C -0.57 -33.63 8.97 23.46 0.21 -33.42 16 20 H 0.07 4.08 7.96 -2.91 -0.02 4.06 16 21 C 0.00 0.15 4.91 85.25 0.42 0.57 16 22 N -0.82 -49.29 12.49 21.82 0.27 -49.01 16 23 Si 1.11 49.32 30.00 68.60 2.06 51.37 16 24 H -0.25 -9.77 7.11 99.48 0.71 -9.07 16 25 H -0.28 -12.23 7.11 99.48 0.71 -11.52 16 26 H -0.27 -11.50 7.11 99.48 0.71 -10.79 16 27 C -0.23 -12.97 6.66 22.85 0.15 -12.82 16 28 C -0.09 -1.81 6.63 30.73 0.20 -1.60 16 29 H 0.08 1.54 8.14 -2.39 -0.02 1.52 16 30 H 0.09 1.51 8.08 -2.38 -0.02 1.49 16 31 H 0.04 1.16 8.00 -2.39 -0.02 1.14 16 32 H 0.16 1.67 8.06 -2.91 -0.02 1.64 16 33 H 0.16 1.16 8.06 -2.91 -0.02 1.14 16 34 H 0.15 1.55 8.06 -2.91 -0.02 1.53 16 35 H 0.43 10.00 8.82 -92.70 -0.82 9.18 16 36 H 0.14 4.20 8.06 -2.91 -0.02 4.17 16 37 H 0.14 4.49 8.06 -2.91 -0.02 4.47 16 38 H 0.10 4.71 8.06 -2.91 -0.02 4.69 16 39 H 0.28 17.18 6.87 -92.71 -0.64 16.55 16 40 H 0.09 5.87 4.96 -2.91 -0.01 5.86 16 41 H 0.15 1.66 8.14 -2.38 -0.02 1.64 16 42 H 0.09 2.00 7.92 -2.39 -0.02 1.98 16 Total: -1.00 -83.38 356.82 4.32 -79.06 By element: Atomic # 1 Polarization: 32.40 SS G_CDS: 0.37 Total: 32.77 kcal Atomic # 6 Polarization: -52.55 SS G_CDS: 3.81 Total: -48.74 kcal Atomic # 7 Polarization: -71.84 SS G_CDS: -1.34 Total: -73.19 kcal Atomic # 8 Polarization: -40.70 SS G_CDS: -0.58 Total: -41.28 kcal Atomic # 14 Polarization: 49.32 SS G_CDS: 2.06 Total: 51.37 kcal Total: -83.38 4.32 -79.06 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001436284403.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.319 kcal (2) G-P(sol) polarization free energy of solvation -83.377 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.058 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.316 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.060 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.741 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds