Wall clock time and date at job start Tue Mar 31 2020 14:08:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 O 1.21226 * 119.99501 * 2 1 4 4 C 1.47376 * 120.00283 * 179.97438 * 2 1 3 5 5 C 1.39834 * 120.02586 * 353.73679 * 4 2 1 6 6 C 1.37742 * 119.97137 * 180.22996 * 5 4 2 7 7 C 1.39603 * 120.03082 * 359.50135 * 6 5 4 8 8 C 1.48028 * 119.97921 * 180.25384 * 7 6 5 9 9 O 1.21530 * 120.00487 * 180.24514 * 8 7 6 10 10 N 1.34781 * 119.99469 * 0.24625 * 8 7 6 11 11 C 1.39845 * 119.99537 * 185.04463 * 10 8 7 12 12 C 1.39313 * 119.94481 * 144.48893 * 11 10 8 13 13 C 1.38490 * 120.42134 * 179.97438 * 12 11 10 14 14 C 1.37685 * 120.32403 * 0.02562 * 13 12 11 15 15 C 1.40745 * 119.88947 * 359.97438 * 14 13 12 16 16 C 1.41413 * 120.20686 * 180.02562 * 15 14 13 17 17 H 1.07994 * 120.00150 * 147.60730 * 16 15 14 18 18 C 1.39935 * 119.99929 * 327.61566 * 16 15 14 19 19 N 1.30831 * 120.00067 * 359.82439 * 18 16 15 20 20 Si 1.86800 * 119.99945 * 179.83166 * 18 16 15 21 21 H 1.48503 * 109.47126 * 359.97438 * 20 18 16 22 22 H 1.48500 * 109.47261 * 119.99476 * 20 18 16 23 23 H 1.48496 * 109.46990 * 239.99569 * 20 18 16 24 24 C 1.38266 * 119.95039 * 324.20922 * 11 10 8 25 25 C 1.39573 * 120.05127 * 0.49502 * 7 6 5 26 26 C 1.37782 * 120.02645 * 359.75996 * 25 7 6 27 27 C 1.50697 * 120.01476 * 179.97438 * 26 25 7 28 28 H 1.09003 * 109.46801 * 185.03694 * 1 2 3 29 29 H 1.08999 * 109.47601 * 305.04117 * 1 2 3 30 30 H 1.09003 * 109.47036 * 65.04539 * 1 2 3 31 31 H 1.07995 * 120.01624 * 359.94978 * 5 4 2 32 32 H 1.08008 * 119.98429 * 179.72125 * 6 5 4 33 33 H 0.96994 * 119.99973 * 5.03914 * 10 8 7 34 34 H 1.07993 * 119.79253 * 0.02562 * 12 11 10 35 35 H 1.08001 * 119.83507 * 180.02562 * 13 12 11 36 36 H 1.07997 * 120.05198 * 179.97438 * 14 13 12 37 37 H 0.96995 * 119.99810 * 179.97438 * 19 18 16 38 38 H 1.07999 * 120.16376 * 0.02562 * 24 11 10 39 39 H 1.08000 * 119.98724 * 179.73030 * 25 7 6 40 40 H 1.09005 * 109.47082 * 262.98163 * 27 26 25 41 41 H 1.08997 * 109.47209 * 22.98170 * 27 26 25 42 42 H 1.09003 * 109.47321 * 142.98345 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1130 1.0499 0.0000 4 6 2.2439 -1.2763 0.0006 5 6 1.5516 -2.4839 0.1332 6 6 2.2420 -3.6759 0.1383 7 6 3.6312 -3.6792 0.0008 8 6 4.3714 -4.9612 0.0008 9 8 5.5812 -4.9644 -0.1144 10 7 3.7035 -6.1249 0.1287 11 6 4.4088 -7.3278 0.2348 12 6 3.9242 -8.3484 1.0498 13 6 4.6144 -9.5438 1.1618 14 6 5.7883 -9.7363 0.4686 15 6 6.2901 -8.7141 -0.3586 16 6 7.4949 -8.9049 -1.0741 17 1 7.6300 -8.4378 -2.0383 18 6 8.5119 -9.6990 -0.5326 19 7 8.3495 -10.2622 0.6370 20 14 10.1015 -9.9548 -1.4798 21 1 10.0354 -9.2162 -2.7665 22 1 11.2434 -9.4489 -0.6764 23 1 10.2893 -11.4028 -1.7498 24 6 5.5829 -7.5044 -0.4737 25 6 4.3234 -2.4745 -0.1317 26 6 3.6356 -1.2806 -0.1319 27 6 4.3833 0.0200 -0.2744 28 1 -0.3633 -1.0237 0.0902 29 1 -0.3634 0.5900 0.8414 30 1 -0.3633 0.4336 -0.9317 31 1 0.4766 -2.4819 0.2361 32 1 1.7079 -4.6085 0.2453 33 1 2.7337 -6.1280 0.1471 34 1 3.0040 -8.2069 1.5971 35 1 4.2299 -10.3289 1.7960 36 1 6.3232 -10.6702 0.5595 37 1 9.0543 -10.8130 1.0121 38 1 5.9573 -6.7153 -1.1090 39 1 5.3985 -2.4781 -0.2337 40 1 4.5516 0.4523 0.7119 41 1 5.3421 -0.1633 -0.7592 42 1 3.7968 0.7119 -0.8791 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001436285095.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:08:31 Heat of formation + Delta-G solvation = -22.339458 kcal Electronic energy + Delta-G solvation = -25383.473658 eV Core-core repulsion = 21679.293521 eV Total energy + Delta-G solvation = -3704.180137 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 323.131 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -40.74938 -39.77137 -38.19665 -37.04808 -34.59346 -33.37157 -32.87669 -32.32322 -29.84907 -29.77486 -28.28679 -27.08407 -25.32778 -24.78253 -22.19127 -21.65869 -20.89928 -20.41677 -19.42374 -18.06819 -17.27086 -16.79795 -16.22175 -15.51635 -15.43412 -15.26184 -14.93949 -14.73844 -14.54330 -14.36409 -14.13027 -13.64999 -13.49063 -13.06493 -12.97506 -12.70185 -12.60003 -12.50934 -12.23311 -12.18999 -12.06068 -11.72417 -11.33949 -11.23341 -11.16112 -10.66490 -10.47543 -10.23341 -9.84119 -9.82790 -9.50533 -9.25584 -9.12382 -9.04257 -8.93330 -7.41085 -6.93687 -6.59573 -4.36996 0.11289 1.05758 1.87059 2.67468 2.83811 3.12043 3.13117 3.18009 3.22496 3.43505 3.67807 3.77823 4.00899 4.35863 4.47265 4.56069 4.69226 4.79746 4.94486 4.99788 5.01741 5.11670 5.30872 5.39769 5.55672 5.57164 5.67201 5.69039 5.87685 5.95474 6.07247 6.20474 6.25321 6.33615 6.51640 6.68196 6.97417 7.01323 7.08833 7.18073 7.30231 7.51604 7.70076 7.93642 8.09314 8.11336 8.25048 8.57724 8.69519 8.96061 8.97494 10.31503 Molecular weight = 323.13amu Principal moments of inertia in cm(-1) A = 0.021976 B = 0.002527 C = 0.002305 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1273.784845 B =11079.435622 C =12145.799192 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C 0.393 3.607 3 O -0.452 6.452 4 C -0.163 4.163 5 C -0.077 4.077 6 C -0.111 4.111 7 C -0.084 4.084 8 C 0.540 3.460 9 O -0.504 6.504 10 N -0.659 5.659 11 C 0.139 3.861 12 C -0.251 4.251 13 C -0.098 4.098 14 C -0.160 4.160 15 C 0.112 3.888 16 C -0.456 4.456 17 H 0.076 0.924 18 C 0.070 3.930 19 N -0.810 5.810 20 Si 0.915 3.085 21 H -0.262 1.262 22 H -0.274 1.274 23 H -0.274 1.274 24 C -0.200 4.200 25 C -0.078 4.078 26 C -0.031 4.031 27 C -0.122 4.122 28 H 0.084 0.916 29 H 0.093 0.907 30 H 0.095 0.905 31 H 0.140 0.860 32 H 0.134 0.866 33 H 0.398 0.602 34 H 0.090 0.910 35 H 0.093 0.907 36 H 0.129 0.871 37 H 0.277 0.723 38 H 0.112 0.888 39 H 0.144 0.856 40 H 0.077 0.923 41 H 0.064 0.936 42 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.110 14.458 -0.499 20.919 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.259 4.259 2 C 0.272 3.728 3 O -0.328 6.328 4 C -0.164 4.164 5 C -0.095 4.095 6 C -0.130 4.130 7 C -0.087 4.087 8 C 0.327 3.673 9 O -0.379 6.379 10 N -0.303 5.303 11 C 0.048 3.952 12 C -0.272 4.272 13 C -0.117 4.117 14 C -0.180 4.180 15 C 0.110 3.890 16 C -0.487 4.487 17 H 0.094 0.906 18 C -0.145 4.145 19 N -0.437 5.437 20 Si 0.740 3.260 21 H -0.186 1.186 22 H -0.200 1.200 23 H -0.200 1.200 24 C -0.221 4.221 25 C -0.097 4.097 26 C -0.031 4.031 27 C -0.178 4.178 28 H 0.103 0.897 29 H 0.112 0.888 30 H 0.114 0.886 31 H 0.157 0.843 32 H 0.151 0.849 33 H 0.233 0.767 34 H 0.108 0.892 35 H 0.111 0.889 36 H 0.147 0.853 37 H 0.088 0.912 38 H 0.130 0.870 39 H 0.162 0.838 40 H 0.096 0.904 41 H 0.083 0.917 42 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges -13.784 14.883 -0.411 20.289 hybrid contribution 0.135 -0.373 -0.112 0.413 sum -13.649 14.509 -0.523 19.927 Atomic orbital electron populations 1.22249 0.93701 1.04933 1.04983 1.22522 0.91623 0.87544 0.71101 1.90501 1.71493 1.34563 1.36267 1.20489 0.94045 0.95043 1.06810 1.21377 1.00121 0.91031 0.96985 1.21289 0.93100 0.98674 0.99916 1.20356 0.93860 0.94104 1.00424 1.18317 0.87491 0.83457 0.78075 1.90845 1.13411 1.86775 1.46829 1.43298 1.09561 1.05497 1.71915 1.17435 0.94777 0.84122 0.98889 1.20111 1.03337 0.96411 1.07326 1.20536 0.96054 0.95609 0.99542 1.21615 0.94888 1.00411 1.01101 1.17576 0.91409 0.89170 0.90893 1.19560 0.98599 1.25836 1.04709 0.90593 1.25873 1.00555 0.93454 0.94633 1.69767 1.33648 1.25122 1.15147 0.86151 0.80860 0.78587 0.80417 1.18557 1.19978 1.19955 1.21209 0.97693 0.98075 1.05130 1.21253 1.01293 0.89992 0.97112 1.20198 0.92463 0.95962 0.94478 1.21101 0.99613 0.93718 1.03352 0.89695 0.88827 0.88614 0.84272 0.84858 0.76711 0.89203 0.88887 0.85344 0.91195 0.86965 0.83776 0.90398 0.91671 0.89149 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -1.01 10.19 36.00 0.37 -0.64 16 2 C 0.39 3.52 7.16 -30.59 -0.22 3.30 16 3 O -0.45 -5.27 14.08 5.60 0.08 -5.19 16 4 C -0.16 -1.61 5.87 -105.00 -0.62 -2.23 16 5 C -0.08 -0.64 9.43 -39.17 -0.37 -1.00 16 6 C -0.11 -1.11 9.52 -39.25 -0.37 -1.49 16 7 C -0.08 -1.15 5.88 -104.88 -0.62 -1.77 16 8 C 0.54 9.76 7.62 -12.24 -0.09 9.67 16 9 O -0.50 -11.38 13.79 5.34 0.07 -11.30 16 10 N -0.66 -11.49 5.27 -10.71 -0.06 -11.55 16 11 C 0.14 3.10 6.28 -83.79 -0.53 2.57 16 12 C -0.25 -5.38 9.97 -39.09 -0.39 -5.77 16 13 C -0.10 -2.26 10.02 -39.69 -0.40 -2.66 16 14 C -0.16 -4.18 8.66 -38.84 -0.34 -4.52 16 15 C 0.11 3.08 5.56 -106.85 -0.59 2.49 16 16 C -0.46 -12.55 9.06 -37.74 -0.34 -12.89 16 17 H 0.08 2.03 7.84 -52.49 -0.41 1.62 16 18 C 0.07 1.81 5.39 -17.34 -0.09 1.72 16 19 N -0.81 -21.48 10.60 55.55 0.59 -20.89 16 20 Si 0.91 19.51 29.56 -169.99 -5.02 14.48 16 21 H -0.26 -5.54 7.11 56.52 0.40 -5.14 16 22 H -0.27 -5.81 7.11 56.52 0.40 -5.41 16 23 H -0.27 -5.66 7.11 56.52 0.40 -5.26 16 24 C -0.20 -5.14 8.43 -38.68 -0.33 -5.47 16 25 C -0.08 -1.03 9.20 -39.25 -0.36 -1.39 16 26 C -0.03 -0.35 5.91 -104.21 -0.62 -0.97 16 27 C -0.12 -1.28 8.70 36.00 0.31 -0.97 16 28 H 0.08 0.27 5.62 -51.93 -0.29 -0.03 16 29 H 0.09 0.40 8.14 -51.93 -0.42 -0.02 16 30 H 0.10 0.40 8.14 -51.93 -0.42 -0.02 16 31 H 0.14 0.64 5.94 -52.49 -0.31 0.33 16 32 H 0.13 1.01 6.40 -52.48 -0.34 0.68 16 33 H 0.40 5.18 6.86 -40.82 -0.28 4.90 16 34 H 0.09 1.64 8.06 -52.49 -0.42 1.21 16 35 H 0.09 1.88 8.06 -52.49 -0.42 1.45 16 36 H 0.13 3.46 6.10 -52.49 -0.32 3.14 16 37 H 0.28 6.70 8.30 -40.82 -0.34 6.36 16 38 H 0.11 2.98 6.25 -52.49 -0.33 2.65 16 39 H 0.14 2.00 7.63 -52.49 -0.40 1.60 16 40 H 0.08 0.80 8.14 -51.93 -0.42 0.38 16 41 H 0.06 0.62 8.03 -51.93 -0.42 0.21 16 42 H 0.09 0.98 5.88 -51.93 -0.31 0.68 16 LS Contribution 352.87 15.07 5.32 5.32 Total: -1.00 -32.55 352.87 -9.26 -41.81 By element: Atomic # 1 Polarization: 14.00 SS G_CDS: -4.65 Total: 9.35 kcal Atomic # 6 Polarization: -16.44 SS G_CDS: -5.59 Total: -22.03 kcal Atomic # 7 Polarization: -32.97 SS G_CDS: 0.53 Total: -32.44 kcal Atomic # 8 Polarization: -16.64 SS G_CDS: 0.15 Total: -16.49 kcal Atomic # 14 Polarization: 19.51 SS G_CDS: -5.02 Total: 14.48 kcal Total LS contribution 5.32 Total: 5.32 kcal Total: -32.55 -9.26 -41.81 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001436285095.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.474 kcal (2) G-P(sol) polarization free energy of solvation -32.550 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.076 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.264 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.814 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.339 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds