Wall clock time and date at job start Tue Mar 31 2020 14:08:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 O 1.21226 * 119.99501 * 2 1 4 4 C 1.47376 * 120.00283 * 179.97438 * 2 1 3 5 5 C 1.39834 * 120.02586 * 353.73679 * 4 2 1 6 6 C 1.37742 * 119.97137 * 180.22996 * 5 4 2 7 7 C 1.39603 * 120.03082 * 359.50135 * 6 5 4 8 8 C 1.48028 * 119.97921 * 180.25384 * 7 6 5 9 9 O 1.21530 * 120.00487 * 180.24514 * 8 7 6 10 10 N 1.34781 * 119.99469 * 0.24625 * 8 7 6 11 11 C 1.39845 * 119.99537 * 185.04463 * 10 8 7 12 12 C 1.39313 * 119.94481 * 144.48893 * 11 10 8 13 13 C 1.38490 * 120.42134 * 179.97438 * 12 11 10 14 14 C 1.37685 * 120.32403 * 0.02562 * 13 12 11 15 15 C 1.40745 * 119.88947 * 359.97438 * 14 13 12 16 16 C 1.41413 * 120.20686 * 180.02562 * 15 14 13 17 17 H 1.07994 * 120.00150 * 147.60730 * 16 15 14 18 18 C 1.39935 * 119.99929 * 327.61566 * 16 15 14 19 19 N 1.30831 * 120.00067 * 359.82439 * 18 16 15 20 20 Si 1.86800 * 119.99945 * 179.83166 * 18 16 15 21 21 H 1.48503 * 109.47126 * 359.97438 * 20 18 16 22 22 H 1.48500 * 109.47261 * 119.99476 * 20 18 16 23 23 H 1.48496 * 109.46990 * 239.99569 * 20 18 16 24 24 C 1.38266 * 119.95039 * 324.20922 * 11 10 8 25 25 C 1.39573 * 120.05127 * 0.49502 * 7 6 5 26 26 C 1.37782 * 120.02645 * 359.75996 * 25 7 6 27 27 C 1.50697 * 120.01476 * 179.97438 * 26 25 7 28 28 H 1.09003 * 109.46801 * 185.03694 * 1 2 3 29 29 H 1.08999 * 109.47601 * 305.04117 * 1 2 3 30 30 H 1.09003 * 109.47036 * 65.04539 * 1 2 3 31 31 H 1.07995 * 120.01624 * 359.94978 * 5 4 2 32 32 H 1.08008 * 119.98429 * 179.72125 * 6 5 4 33 33 H 0.96994 * 119.99973 * 5.03914 * 10 8 7 34 34 H 1.07993 * 119.79253 * 0.02562 * 12 11 10 35 35 H 1.08001 * 119.83507 * 180.02562 * 13 12 11 36 36 H 1.07997 * 120.05198 * 179.97438 * 14 13 12 37 37 H 0.96995 * 119.99810 * 179.97438 * 19 18 16 38 38 H 1.07999 * 120.16376 * 0.02562 * 24 11 10 39 39 H 1.08000 * 119.98724 * 179.73030 * 25 7 6 40 40 H 1.09005 * 109.47082 * 262.98163 * 27 26 25 41 41 H 1.08997 * 109.47209 * 22.98170 * 27 26 25 42 42 H 1.09003 * 109.47321 * 142.98345 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1130 1.0499 0.0000 4 6 2.2439 -1.2763 0.0006 5 6 1.5516 -2.4839 0.1332 6 6 2.2420 -3.6759 0.1383 7 6 3.6312 -3.6792 0.0008 8 6 4.3714 -4.9612 0.0008 9 8 5.5812 -4.9644 -0.1144 10 7 3.7035 -6.1249 0.1287 11 6 4.4088 -7.3278 0.2348 12 6 3.9242 -8.3484 1.0498 13 6 4.6144 -9.5438 1.1618 14 6 5.7883 -9.7363 0.4686 15 6 6.2901 -8.7141 -0.3586 16 6 7.4949 -8.9049 -1.0741 17 1 7.6300 -8.4378 -2.0383 18 6 8.5119 -9.6990 -0.5326 19 7 8.3495 -10.2622 0.6370 20 14 10.1015 -9.9548 -1.4798 21 1 10.0354 -9.2162 -2.7665 22 1 11.2434 -9.4489 -0.6764 23 1 10.2893 -11.4028 -1.7498 24 6 5.5829 -7.5044 -0.4737 25 6 4.3234 -2.4745 -0.1317 26 6 3.6356 -1.2806 -0.1319 27 6 4.3833 0.0200 -0.2744 28 1 -0.3633 -1.0237 0.0902 29 1 -0.3634 0.5900 0.8414 30 1 -0.3633 0.4336 -0.9317 31 1 0.4766 -2.4819 0.2361 32 1 1.7079 -4.6085 0.2453 33 1 2.7337 -6.1280 0.1471 34 1 3.0040 -8.2069 1.5971 35 1 4.2299 -10.3289 1.7960 36 1 6.3232 -10.6702 0.5595 37 1 9.0543 -10.8130 1.0121 38 1 5.9573 -6.7153 -1.1090 39 1 5.3985 -2.4781 -0.2337 40 1 4.5516 0.4523 0.7119 41 1 5.3421 -0.1633 -0.7592 42 1 3.7968 0.7119 -0.8791 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001436285095.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:08:30 Heat of formation + Delta-G solvation = -41.201743 kcal Electronic energy + Delta-G solvation = -25384.291588 eV Core-core repulsion = 21679.293521 eV Total energy + Delta-G solvation = -3704.998067 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 323.131 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -41.81284 -40.95114 -39.37345 -38.61033 -36.30569 -34.97604 -33.90308 -33.26660 -31.74801 -30.51646 -29.88946 -27.93207 -27.27680 -25.91010 -23.35538 -22.90568 -22.69557 -21.57671 -20.61985 -19.69128 -18.62911 -17.68649 -17.52913 -17.12401 -16.58999 -16.46372 -16.32393 -16.07809 -15.93576 -15.39440 -15.16538 -14.91461 -14.71060 -14.42333 -14.24612 -14.06335 -13.69871 -13.62054 -13.27485 -13.06136 -13.04619 -12.94647 -12.90623 -12.82600 -12.56695 -12.21364 -12.11292 -12.04694 -11.66426 -11.26176 -10.98338 -10.71683 -10.51018 -10.17343 -9.89206 -9.34502 -8.75659 -8.52776 -6.42111 -0.79270 0.22837 0.81712 0.96380 1.18373 1.34741 1.46298 1.50498 1.90977 2.05890 2.21827 2.69849 2.78344 3.01497 3.55261 3.61008 3.69723 3.71798 4.05530 4.11515 4.25663 4.39599 4.47521 4.60246 4.61751 4.65266 4.69154 4.73004 4.89738 4.97829 5.03564 5.10433 5.10812 5.13055 5.14241 5.19755 5.25982 5.34951 5.43172 5.67139 5.75112 5.83207 6.06414 6.13204 6.34072 6.52020 6.53693 6.69720 6.94263 6.99332 7.19362 8.39739 Molecular weight = 323.13amu Principal moments of inertia in cm(-1) A = 0.021976 B = 0.002527 C = 0.002305 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1273.784845 B =11079.435622 C =12145.799192 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C 0.393 3.607 3 O -0.485 6.485 4 C -0.162 4.162 5 C -0.056 4.056 6 C -0.099 4.099 7 C -0.105 4.105 8 C 0.539 3.461 9 O -0.562 6.562 10 N -0.644 5.644 11 C 0.146 3.854 12 C -0.234 4.234 13 C -0.097 4.097 14 C -0.185 4.185 15 C 0.079 3.921 16 C -0.500 4.500 17 H 0.063 0.937 18 C 0.028 3.972 19 N -0.839 5.839 20 Si 0.987 3.013 21 H -0.264 1.264 22 H -0.268 1.268 23 H -0.257 1.257 24 C -0.227 4.227 25 C -0.095 4.095 26 C -0.046 4.046 27 C -0.118 4.118 28 H 0.112 0.888 29 H 0.104 0.896 30 H 0.108 0.892 31 H 0.192 0.808 32 H 0.166 0.834 33 H 0.423 0.577 34 H 0.139 0.861 35 H 0.127 0.873 36 H 0.112 0.888 37 H 0.285 0.715 38 H 0.088 0.912 39 H 0.120 0.880 40 H 0.076 0.924 41 H 0.064 0.936 42 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.215 14.979 0.410 24.367 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.252 4.252 2 C 0.274 3.726 3 O -0.364 6.364 4 C -0.163 4.163 5 C -0.073 4.073 6 C -0.117 4.117 7 C -0.108 4.108 8 C 0.328 3.672 9 O -0.440 6.440 10 N -0.291 5.291 11 C 0.053 3.947 12 C -0.254 4.254 13 C -0.116 4.116 14 C -0.205 4.205 15 C 0.077 3.923 16 C -0.531 4.531 17 H 0.081 0.919 18 C -0.184 4.184 19 N -0.466 5.466 20 Si 0.807 3.193 21 H -0.188 1.188 22 H -0.193 1.193 23 H -0.181 1.181 24 C -0.248 4.248 25 C -0.114 4.114 26 C -0.046 4.046 27 C -0.174 4.174 28 H 0.130 0.870 29 H 0.122 0.878 30 H 0.126 0.874 31 H 0.208 0.792 32 H 0.184 0.816 33 H 0.263 0.737 34 H 0.157 0.843 35 H 0.145 0.855 36 H 0.130 0.870 37 H 0.096 0.904 38 H 0.107 0.893 39 H 0.138 0.862 40 H 0.095 0.905 41 H 0.083 0.917 42 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges -17.965 15.407 0.506 23.672 hybrid contribution 1.208 -0.388 -0.339 1.314 sum -16.756 15.019 0.167 22.503 Atomic orbital electron populations 1.22297 0.89759 1.07071 1.06023 1.23101 0.93538 0.86322 0.69657 1.90505 1.72602 1.35484 1.37771 1.20905 0.93333 0.96863 1.05228 1.21879 1.02328 0.89116 0.94027 1.21633 0.91099 1.00958 0.98016 1.20039 0.95460 0.91361 1.03928 1.19055 0.87092 0.84849 0.76209 1.90824 1.16260 1.87659 1.49300 1.43116 1.10650 1.03849 1.71460 1.17508 0.93784 0.85988 0.97413 1.20579 1.04233 0.94890 1.05748 1.20924 0.94750 0.97175 0.98731 1.21564 0.96592 0.99719 1.02669 1.17906 0.92093 0.90296 0.92021 1.19746 1.00252 1.28034 1.05054 0.91896 1.26710 1.03555 0.92627 0.95506 1.69824 1.34980 1.25609 1.16225 0.85095 0.76278 0.79202 0.78675 1.18834 1.19301 1.18120 1.21162 0.99824 0.97237 1.06622 1.21134 1.00518 0.91043 0.98684 1.20297 0.93793 0.95233 0.95296 1.21054 0.99619 0.93491 1.03234 0.86985 0.87763 0.87407 0.79157 0.81642 0.73698 0.84317 0.85550 0.86983 0.90427 0.89336 0.86173 0.90539 0.91732 0.89319 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -0.97 10.19 71.24 0.73 -0.25 16 2 C 0.39 5.82 7.16 28.09 0.20 6.03 16 3 O -0.49 -10.60 14.08 -2.86 -0.04 -10.65 16 4 C -0.16 -2.75 5.87 -20.11 -0.12 -2.87 16 5 C -0.06 -0.64 9.43 22.54 0.21 -0.43 16 6 C -0.10 -1.58 9.52 22.48 0.21 -1.37 16 7 C -0.10 -2.79 5.88 -20.03 -0.12 -2.91 16 8 C 0.54 19.77 7.62 86.84 0.66 20.43 16 9 O -0.56 -27.16 13.79 -3.81 -0.05 -27.22 16 10 N -0.64 -21.56 5.27 -306.09 -1.61 -23.18 16 11 C 0.15 6.43 6.28 38.13 0.24 6.67 16 12 C -0.23 -9.39 9.97 22.59 0.23 -9.17 16 13 C -0.10 -4.33 10.02 22.20 0.22 -4.10 16 14 C -0.19 -9.97 8.66 22.75 0.20 -9.77 16 15 C 0.08 4.60 5.56 -21.31 -0.12 4.48 16 16 C -0.50 -29.43 9.06 23.46 0.21 -29.22 16 17 H 0.06 3.68 7.84 -2.91 -0.02 3.65 16 18 C 0.03 1.51 5.39 85.25 0.46 1.97 16 19 N -0.84 -46.21 10.60 21.82 0.23 -45.98 16 20 Si 0.99 41.55 29.56 68.60 2.03 43.58 16 21 H -0.26 -11.09 7.11 99.48 0.71 -10.38 16 22 H -0.27 -10.92 7.11 99.48 0.71 -10.22 16 23 H -0.26 -10.02 7.11 99.48 0.71 -9.32 16 24 C -0.23 -12.29 8.43 22.85 0.19 -12.09 16 25 C -0.09 -2.62 9.20 22.48 0.21 -2.41 16 26 C -0.05 -1.05 5.91 -19.60 -0.12 -1.17 16 27 C -0.12 -2.57 8.70 71.24 0.62 -1.95 16 28 H 0.11 -0.08 5.62 -2.39 -0.01 -0.09 16 29 H 0.10 0.40 8.14 -2.39 -0.02 0.38 16 30 H 0.11 0.38 8.14 -2.39 -0.02 0.36 16 31 H 0.19 0.24 5.94 -2.91 -0.02 0.23 16 32 H 0.17 1.54 6.40 -2.91 -0.02 1.52 16 33 H 0.42 9.42 6.86 -92.71 -0.64 8.79 16 34 H 0.14 4.25 8.06 -2.91 -0.02 4.22 16 35 H 0.13 4.73 8.06 -2.91 -0.02 4.70 16 36 H 0.11 6.30 6.10 -2.91 -0.02 6.29 16 37 H 0.29 14.16 8.30 -92.71 -0.77 13.39 16 38 H 0.09 5.12 6.25 -2.91 -0.02 5.10 16 39 H 0.12 3.77 7.63 -2.91 -0.02 3.75 16 40 H 0.08 1.64 8.14 -2.38 -0.02 1.62 16 41 H 0.06 1.35 8.03 -2.39 -0.02 1.33 16 42 H 0.09 1.96 5.88 -2.39 -0.01 1.95 16 Total: -1.00 -79.40 352.87 5.12 -74.28 By element: Atomic # 1 Polarization: 26.83 SS G_CDS: 0.45 Total: 27.27 kcal Atomic # 6 Polarization: -42.23 SS G_CDS: 4.12 Total: -38.11 kcal Atomic # 7 Polarization: -67.77 SS G_CDS: -1.38 Total: -69.16 kcal Atomic # 8 Polarization: -37.77 SS G_CDS: -0.09 Total: -37.86 kcal Atomic # 14 Polarization: 41.55 SS G_CDS: 2.03 Total: 43.58 kcal Total: -79.40 5.12 -74.28 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001436285095.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.076 kcal (2) G-P(sol) polarization free energy of solvation -79.397 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.321 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.120 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.278 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.202 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds