Wall clock time and date at job start Tue Mar 31 2020 13:51:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 C 1.37972 * 119.88090 * 2 1 4 4 C 1.38243 * 120.35656 * 180.02562 * 3 2 1 5 5 C 1.38394 * 119.76130 * 0.21212 * 4 3 2 6 6 C 1.37693 * 119.97825 * 359.97438 * 5 4 3 7 7 C 1.38923 * 120.79131 * 359.62032 * 6 5 4 8 8 O 1.36132 * 111.22577 * 180.64250 * 7 6 5 9 9 C 1.43772 * 109.24065 * 340.96087 * 8 7 6 10 10 H 1.08996 * 110.74803 * 269.24492 * 9 8 7 11 11 C 1.50697 * 110.74608 * 146.08126 * 9 8 7 12 12 O 1.21279 * 120.00356 * 356.45704 * 11 9 8 13 13 N 1.34775 * 120.00090 * 176.45386 * 11 9 8 14 14 C 1.39243 * 120.00128 * 175.70745 * 13 11 9 15 15 C 1.39483 * 119.83216 * 215.53397 * 14 13 11 16 16 C 1.36371 * 120.16534 * 180.20998 * 15 14 13 17 17 C 1.40868 * 119.83219 * 359.52200 * 16 15 14 18 18 C 1.41148 * 120.16748 * 180.27297 * 17 16 15 19 19 H 1.07995 * 120.00214 * 145.21885 * 18 17 16 20 20 C 1.39909 * 119.99954 * 325.22097 * 18 17 16 21 21 N 1.30871 * 120.00057 * 4.43552 * 20 18 17 22 22 Si 1.86795 * 119.99846 * 184.43669 * 20 18 17 23 23 H 1.48492 * 109.47377 * 359.97438 * 22 20 18 24 24 H 1.48500 * 109.47335 * 120.00416 * 22 20 18 25 25 H 1.48506 * 109.47151 * 239.99673 * 22 20 18 26 26 C 1.40877 * 119.66841 * 0.25650 * 17 16 15 27 27 C 1.36367 * 119.82869 * 359.97438 * 26 17 16 28 28 C 1.51642 * 132.17115 * 179.03875 * 6 5 4 29 29 H 1.09001 * 109.46929 * 269.97670 * 1 2 3 30 30 H 1.09002 * 109.47433 * 29.97693 * 1 2 3 31 31 H 1.09005 * 109.47203 * 149.97589 * 1 2 3 32 32 H 1.08004 * 119.82396 * 0.02562 * 3 2 1 33 33 H 1.07995 * 120.12106 * 180.22222 * 4 3 2 34 34 H 1.07998 * 120.00850 * 179.97438 * 5 4 3 35 35 H 0.97000 * 119.99851 * 355.71071 * 13 11 9 36 36 H 1.08002 * 119.91806 * 0.02562 * 15 14 13 37 37 H 1.08003 * 120.08491 * 179.79924 * 16 15 14 38 38 H 0.96999 * 120.00117 * 180.02562 * 21 20 18 39 39 H 1.07998 * 120.08299 * 180.02562 * 26 17 16 40 40 H 1.07999 * 119.91631 * 180.02562 * 27 26 17 41 41 H 1.08995 * 110.94069 * 77.73378 * 28 6 5 42 42 H 1.09002 * 110.93831 * 314.04977 * 28 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1943 1.1963 0.0000 4 6 3.5767 1.2078 -0.0005 5 6 4.2736 0.0121 -0.0055 6 6 3.5897 -1.1829 -0.0094 7 6 2.2007 -1.2073 -0.0005 8 8 1.7303 -2.4848 0.0079 9 6 2.7678 -3.3747 -0.4377 10 1 2.7201 -3.5133 -1.5178 11 6 2.6759 -4.7003 0.2731 12 8 1.8450 -4.8669 1.1407 13 7 3.5171 -5.7007 -0.0552 14 6 3.4925 -6.8945 0.6613 15 6 4.6797 -7.5887 0.8940 16 6 4.6629 -8.7606 1.5911 17 6 3.4439 -9.2645 2.0854 18 6 3.4191 -10.4738 2.8128 19 1 2.7203 -10.6004 3.6265 20 6 4.2999 -11.5086 2.4799 21 7 5.2047 -11.3248 1.5524 22 14 4.1844 -13.1526 3.3593 23 1 3.0865 -13.1038 4.3579 24 1 3.9070 -14.2248 2.3700 25 1 5.4684 -13.4362 4.0494 26 6 2.2496 -8.5552 1.8503 27 6 2.2816 -7.3871 1.1474 28 6 4.0592 -2.6246 -0.0340 29 1 -0.3633 -0.0004 1.0277 30 1 -0.3634 0.8902 -0.5135 31 1 -0.3634 -0.8898 -0.5142 32 1 1.6495 2.1289 0.0004 33 1 4.1109 2.1464 0.0031 34 1 5.3536 0.0164 -0.0064 35 1 4.1398 -5.5892 -0.7906 36 1 5.6143 -7.1986 0.5185 37 1 5.5826 -9.2987 1.7677 38 1 5.8151 -12.0424 1.3213 39 1 1.3113 -8.9352 2.2265 40 1 1.3669 -6.8420 0.9667 41 1 4.4007 -2.9399 0.9519 42 1 4.8415 -2.7668 -0.7795 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001524861680.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:51:14 Heat of formation + Delta-G solvation = -17.994279 kcal Electronic energy + Delta-G solvation = -25575.606617 eV Core-core repulsion = 21871.614902 eV Total energy + Delta-G solvation = -3703.991715 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 323.131 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -41.53838 -39.55826 -37.81069 -37.02319 -34.53643 -33.80222 -32.98259 -31.29837 -30.16060 -29.59229 -28.65306 -26.97499 -25.44346 -24.02992 -22.34604 -21.63519 -21.07372 -20.81116 -19.80105 -17.74211 -17.51756 -17.25580 -16.93303 -16.13616 -15.83848 -15.17800 -15.01435 -14.64804 -14.09664 -13.96561 -13.86868 -13.66381 -13.31754 -13.18926 -12.93598 -12.78290 -12.58511 -12.46061 -12.19588 -12.03560 -11.73822 -11.68300 -11.46665 -11.31017 -11.18173 -10.98411 -10.94553 -10.56430 -10.11443 -9.86603 -9.35207 -9.20763 -8.91320 -8.82677 -8.26248 -7.59508 -6.94619 -6.66393 -4.37976 1.05294 1.15928 2.38288 2.77301 2.90835 3.05191 3.08159 3.13501 3.22453 3.43907 3.73324 3.95426 4.19050 4.35781 4.59274 4.64476 4.72501 4.78153 4.91811 5.00356 5.07350 5.24457 5.37243 5.49778 5.50985 5.51467 5.61589 5.69435 6.01644 6.13338 6.14373 6.18598 6.28883 6.37911 6.40146 6.66656 6.84949 7.00036 7.02580 7.14717 7.25054 7.59859 7.66818 7.80458 8.02500 8.16621 8.26959 8.54960 8.64015 8.89044 8.94936 10.24896 Molecular weight = 323.13amu Principal moments of inertia in cm(-1) A = 0.035514 B = 0.002257 C = 0.002171 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 788.232118 B =12405.190131 C =12895.510114 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.110 4.110 2 C -0.103 4.103 3 C -0.088 4.088 4 C -0.147 4.147 5 C -0.074 4.074 6 C -0.170 4.170 7 C 0.108 3.892 8 O -0.270 6.270 9 C 0.066 3.934 10 H 0.109 0.891 11 C 0.502 3.498 12 O -0.507 6.507 13 N -0.643 5.643 14 C 0.000 4.000 15 C -0.117 4.117 16 C -0.142 4.142 17 C 0.102 3.898 18 C -0.459 4.459 19 H 0.077 0.923 20 C 0.069 3.931 21 N -0.812 5.812 22 Si 0.916 3.084 23 H -0.262 1.262 24 H -0.274 1.274 25 H -0.274 1.274 26 C -0.206 4.206 27 C -0.084 4.084 28 C -0.097 4.097 29 H 0.070 0.930 30 H 0.066 0.934 31 H 0.069 0.931 32 H 0.130 0.870 33 H 0.127 0.873 34 H 0.125 0.875 35 H 0.397 0.603 36 H 0.092 0.908 37 H 0.133 0.867 38 H 0.277 0.723 39 H 0.097 0.903 40 H 0.108 0.892 41 H 0.098 0.902 42 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.290 19.915 -7.109 21.147 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C -0.104 4.104 3 C -0.106 4.106 4 C -0.165 4.165 5 C -0.092 4.092 6 C -0.170 4.170 7 C 0.063 3.937 8 O -0.183 6.183 9 C 0.006 3.994 10 H 0.127 0.873 11 C 0.287 3.713 12 O -0.381 6.381 13 N -0.287 5.287 14 C -0.092 4.092 15 C -0.137 4.137 16 C -0.162 4.162 17 C 0.099 3.901 18 C -0.490 4.490 19 H 0.095 0.905 20 C -0.146 4.146 21 N -0.439 5.439 22 Si 0.741 3.259 23 H -0.186 1.186 24 H -0.200 1.200 25 H -0.200 1.200 26 C -0.226 4.226 27 C -0.104 4.104 28 C -0.135 4.135 29 H 0.089 0.911 30 H 0.085 0.915 31 H 0.088 0.912 32 H 0.148 0.852 33 H 0.145 0.855 34 H 0.143 0.857 35 H 0.231 0.769 36 H 0.110 0.890 37 H 0.151 0.849 38 H 0.088 0.912 39 H 0.115 0.885 40 H 0.125 0.875 41 H 0.117 0.883 42 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges -0.361 19.582 -6.522 20.643 hybrid contribution 0.561 -0.773 -0.170 0.970 sum 0.200 18.809 -6.692 19.965 Atomic orbital electron populations 1.20697 0.90549 1.02811 1.02624 1.19138 0.96489 0.89403 1.05322 1.20775 0.94225 0.96463 0.99176 1.20995 0.94093 0.97696 1.03757 1.20279 0.99825 0.90437 0.98679 1.20728 0.93676 0.95250 1.07382 1.19454 0.91862 0.85521 0.96898 1.86951 1.36723 1.12870 1.81739 1.23197 0.86759 0.89939 0.99521 0.87320 1.19900 0.83068 0.84277 0.84082 1.90739 1.34776 1.81416 1.31170 1.42801 1.38400 1.13333 1.34199 1.17221 0.94646 0.88808 1.08501 1.20315 0.94127 0.97392 1.01875 1.21203 0.99423 0.94236 1.01344 1.17752 0.90476 0.91580 0.90292 1.19556 1.16453 0.97781 1.15195 0.90486 1.25891 0.93461 1.01023 0.94197 1.69766 1.14811 1.33604 1.25720 0.86135 0.79055 0.80918 0.79818 1.18553 1.19964 1.19974 1.20833 0.97433 0.98024 1.06271 1.20414 0.95576 0.95415 0.98958 1.21730 0.96966 0.90302 1.04473 0.91139 0.91534 0.91215 0.85214 0.85468 0.85699 0.76922 0.88990 0.84949 0.91173 0.88488 0.87455 0.88345 0.88078 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.07 9.98 36.00 0.36 -0.71 16 2 C -0.10 -1.17 5.90 -104.35 -0.62 -1.79 16 3 C -0.09 -0.81 9.66 -39.68 -0.38 -1.19 16 4 C -0.15 -1.27 10.07 -39.52 -0.40 -1.67 16 5 C -0.07 -0.71 10.03 -39.72 -0.40 -1.11 16 6 C -0.17 -1.99 6.27 -104.10 -0.65 -2.64 16 7 C 0.11 1.45 6.73 -38.95 -0.26 1.19 16 8 O -0.27 -4.23 10.27 -39.20 -0.40 -4.63 16 9 C 0.07 0.87 4.05 -26.99 -0.11 0.76 16 10 H 0.11 1.11 8.14 -51.93 -0.42 0.69 16 11 C 0.50 8.76 6.96 -10.99 -0.08 8.68 16 12 O -0.51 -11.29 13.99 -13.48 -0.19 -11.48 16 13 N -0.64 -10.81 5.30 -9.74 -0.05 -10.87 16 14 C 0.00 0.00 6.31 -83.57 -0.53 -0.53 16 15 C -0.12 -2.59 9.90 -39.79 -0.39 -2.99 16 16 C -0.14 -3.60 8.61 -39.26 -0.34 -3.93 16 17 C 0.10 2.70 5.55 -106.80 -0.59 2.11 16 18 C -0.46 -12.18 9.02 -37.85 -0.34 -12.52 16 19 H 0.08 1.98 7.85 -52.49 -0.41 1.57 16 20 C 0.07 1.73 5.42 -17.34 -0.09 1.64 16 21 N -0.81 -20.68 10.59 55.55 0.59 -20.09 16 22 Si 0.92 18.83 29.56 -169.99 -5.03 13.80 16 23 H -0.26 -5.35 7.11 56.52 0.40 -4.95 16 24 H -0.27 -5.57 7.11 56.52 0.40 -5.17 16 25 H -0.27 -5.52 7.11 56.52 0.40 -5.12 16 26 C -0.21 -5.21 9.74 -39.26 -0.38 -5.59 16 27 C -0.08 -2.01 8.61 -39.79 -0.34 -2.35 16 28 C -0.10 -1.07 6.64 -26.52 -0.18 -1.25 16 29 H 0.07 0.68 8.14 -51.93 -0.42 0.25 16 30 H 0.07 0.49 8.08 -51.93 -0.42 0.07 16 31 H 0.07 0.74 8.01 -51.93 -0.42 0.33 16 32 H 0.13 0.84 8.06 -52.48 -0.42 0.42 16 33 H 0.13 0.76 8.06 -52.49 -0.42 0.34 16 34 H 0.13 0.92 8.06 -52.49 -0.42 0.49 16 35 H 0.40 5.01 8.82 -40.82 -0.36 4.65 16 36 H 0.09 1.75 8.06 -52.49 -0.42 1.32 16 37 H 0.13 3.46 6.13 -52.48 -0.32 3.13 16 38 H 0.28 6.44 8.30 -40.82 -0.34 6.10 16 39 H 0.10 2.34 8.06 -52.49 -0.42 1.92 16 40 H 0.11 2.57 6.22 -52.49 -0.33 2.24 16 41 H 0.10 1.20 7.92 -51.93 -0.41 0.79 16 42 H 0.10 0.79 8.14 -51.93 -0.42 0.36 16 LS Contribution 356.53 15.07 5.37 5.37 Total: -1.00 -31.72 356.53 -10.62 -42.33 By element: Atomic # 1 Polarization: 14.62 SS G_CDS: -5.18 Total: 9.44 kcal Atomic # 6 Polarization: -18.16 SS G_CDS: -5.73 Total: -23.89 kcal Atomic # 7 Polarization: -31.49 SS G_CDS: 0.54 Total: -30.95 kcal Atomic # 8 Polarization: -15.52 SS G_CDS: -0.59 Total: -16.11 kcal Atomic # 14 Polarization: 18.83 SS G_CDS: -5.03 Total: 13.80 kcal Total LS contribution 5.37 Total: 5.37 kcal Total: -31.72 -10.62 -42.33 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001524861680.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.338 kcal (2) G-P(sol) polarization free energy of solvation -31.716 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.378 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.616 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.332 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.994 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds